3T48A

Crystal structure of truncated form of staphylococcal complement inhibitor d (scin-d) at 1.5 angstrom
Total Genus 26
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
26
sequence length
71
structure length
71
Chain Sequence
QHQALVDQLHELIANTDLNKLSYLNLDAFQKRDILAAHYIAKSAIRTKNLDQMTKAKQRLESIYNSISNPL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Immune system
source organism Staphylococcus aureus
publication title Diversity in the C3b Convertase Contact Residues and Tertiary Structures of the Staphylococcal Complement Inhibitor (SCIN) Protein Family.
pubmed doi rcsb
molecule keywords SCIN-D
total genus 26
structure length 71
sequence length 71
chains with identical sequence B
ec nomenclature
pdb deposition date 2011-07-25
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1270.10 Mainly Alpha Up-down Bundle Substrate Binding Domain Of Dnak; Chain:A; Domain 2 Substrate Binding Domain Of Dnak; Chain:A; Domain 2 3t48A00
3L3OM 3T48A 4EZVA 4EZQA 4EZYA 4JN4A 4EZUA 4JWIA 1DKXA 3T46A 3QNJA 3C7NA 4HYBA 1DKYA 2QXLA 4R5JA 4B9QA 4JWEA 4JNEA 3DPPA 3D2FA 3T47A 4EZWA 4H6HA 4F00A 3DPQA 4R5KA 2KHOA 4EZXA 3D2EA 4JWCA 4JNFA 5E84A 4PO2A 4H6IA 4R5GA 4E81A 4EZNA 3DPOA 4HY9A 3T49A 4EZPA 4EZOA 4JWDA 3OHXM 1DKZA 4EZTA 4EZSA 4R5LA 5TKYA 4F01A 1U00A 4R5IA 4EZRA 4EZZA 3T4AG 2WINM 2QFFA
chains in the Genus database with same CATH superfamily
3CVRA 4JLCA 2Z0NA 4IM2A 3T47A 4EZXA 2F7PA 3T49A 2Z0OA 3O3MB 4R5LA 4EZRA 2ELBA 2WINM 3QA8A 2JNKA 4JN4A 4JWIA 1GN9A 2YIVX 1DKYA 1R33A 2FICA 2D1LA 4BNEA 2ALWA 1E9VA 2KHOA 2F1AA 5C5BA 4UDYX 4EZNA 1HXKA 3HAHA 3ACOA 2EWFA 2N3KA 1SUFA 2V0OA 4NSWA 3O3NB 1JQKA 3RPMA 1TQUA 1X03A 3RV0A 3VEAA 2Q12A 3BUQA 3F7WA 3D50A 4AZ6A 2F18A 1E1DA 4R5KA 3SYVA 1URUA 2MI7A 2X3XA 4H6IA 4AZ7A 3RV1A 1I49A 3EJQA 4AZCA 4HY9A 4KIKA 4EZTA 1OA0A 3BUDA 2RAKA 3BVTA 4IWPA 3Q84A 4JNEA 1Y2OA 4D8JA 3DDGA 2RAIA 3DX1A 3QNIA 4EZOA 1SU7A 4EZSA 4IW0A 2PY6A 3T4AG 1O7DC 2YL9A 2OW6A 3ABHA 3C7NA 4HYBA 4I1QA 1GNLA 1WDZA 1SU8A 4WPEA 3ER8C 2OZNB 3EJPA 2WYHA 4PO2A 3BVUA 2YKTA 3OWGA 2ND1A 3PLTA 3OK8A 4EZZA 2YL6A 1O7DB 3D52A 4EZVA 4EZQA 3ER9B 3QE6A 4ATMA 2EX3B 4NQIA 1QWUA 1HWWA 3B53X 5E84A 2GF4A 1QWNA 3BVVA 4JWDA 1TQSA 1U00A 4IM0A 3I39X 3BLBA 1DKXA 1UPXA 4R5JA 2PMRA 3LVTA 3LLLA 5C5BB 1I4TA 3BVXA 3M3WA 3G9GA 3DX4A 3DDFA 3QWEA 3Q0KA 2EFKA 4HR1A 2LXYA 4JWEA 3DPPA 4EZWA 3B51X 4FZOA 2EFLA 4M0MA 3EJSA 2F1BA 2X3VA 4F01A 2Q13A 2JNSA 2QFFA 3VKHA 4FM3A 3ZEDA 4HR1B 3SOGA 4AZHA 3CKDA 3D2FA 2GAFD 2ND0A 3ERCC 3KAWA 4AZCB 2F7QA 4KIKB 3EJRA 1GNTA 3DPOA 5TKYA 3DYTA 3I04A 4AZ5A 2RT6A 3T46A 3QNJA 3D51A 2RAJA 4H6HA 4F00A 3D4ZA 4JL9A 3DX0A 1ZWWA 1TQWA 3OHXM 1R5EA 1OA1A 3DX2A 2OO2A 2YIAA 1W9MA 3L3OM 2YL8A 3B52X 2YL5A 3BUBA 2GA9D 5FLEX 2OW7A 2D4CA 2YLLA 3BUPA 4FZPA 4NPHA 3D4YA 1ZYLA 4IWOA 3I2WA 5FIGA 4AKVA 1HTYA 2Z8YA 4WPCA 1TQTA 3UITA 3T48A 2QKWA 2O0I1 4FZSA 3HAJA 2F7RA 3CAZA 2X3WA 4E3CA 1R34A 1SU6A 3GI7A 3I01A 3HAIA 2F7OA 4AZIA 1QX1A 1LQ7A 4AVMA 4EZYA 1TQVA 2NCZA 3O3OB 4IM3A 2QXLA 3L3PA 1OAOA 3DPQA 2ZXQA 4JWCA 4JNFA 3BVWA 5KBPA 4IWQA 4UDXX 1E2UA 4EZPA 2OBLA 4DYLA 2WYIA 2OBMA 1MJGA 2LM0A 3VEBA 3LMFA 1I4LA 4H8SA 4AZBA 1I4DA 2Z0VA 3CZSA 3D2EA 3CV5A 4R5GA 2C08A 4E81A 3EJTA 4R5IA 2X5CA 4B9QA 2YI9A 3A98A 3KAVA 4EZUA 3KDRA 3BUIA 1YWMA 3CZNA 3FD9A 3DX3A 2YIBA 4AZGA 3EJUA 1PS3A 4DCNC 4G6QA 2FYVA 1X04A 2YI8A 2YLAA 1DKZA
chains in the Genus database with same CATH topology
3UITA 3T48A 4JLCA 4IWPA 4HR1A 4JWEA 4JNEA 3DPPA 4IM2A 3T47A 4EZWA 4E3CA 4EZXA 4D8JA 3B51X 1SU6A 3GI7A 4M0MA 3I01A 3T49A 4EZOA 1SU7A 4EZSA 3O3MB 4R5LA 4IW0A 4F01A 4EZRA 2PY6A 2JNSA 3T4AG 2WINM 2QFFA 3QA8A 3VKHA 4FM3A 3ZEDA 4HR1B 4EZYA 4JN4A 2NCZA 4JWIA 1GN9A 3O3OB 2YIVX 3C7NA 1DKYA 4HYBA 4IM3A 2QXLA 1GNLA 1OAOA 1SU8A 3D2FA 3ER8C 1E9VA 3DPQA 2GAFD 2KHOA 2ND0A 4JWCA 3ERCC 3KAWA 4JNFA 4PO2A 4KIKB 4IWQA 4UDXX 4UDYX 1E2UA 4EZNA 1GNTA 3DPOA 3OWGA 4EZPA 2ND1A 2OBLA 5TKYA 2EWFA 2N3KA 4EZZA 3I04A 2OBMA 1MJGA 1SUFA 2LM0A 4EZVA 4EZQA 2RT6A 3ER9B 3LMFA 3VEBA 3T46A 3QNJA 3O3NB 1JQKA 2EX3B 4H6HA 4F00A 3B53X 3D2EA 5E84A 4JL9A 4R5GA 4E81A 3RV0A 4JWDA 3OHXM 1U00A 1OA1A 4IM0A 2X5CA 4R5IA 2YIAA 1W9MA 4B9QA 2YI9A 3A98A 3VEAA 3F7WA 3KAVA 3I39X 3L3OM 4EZUA 3KDRA 3B52X 1DKXA 1UPXA 2GA9D 4R5JA 3FD9A 5FLEX 2YIBA 1E1DA 4NPHA 4R5KA 4G6QA 1ZYLA 4IWOA 2YI8A 5FIGA 4H6IA 3RV1A 4HY9A 4KIKA 1DKZA 4EZTA 1OA0A 2Z8YA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3L3O M;  3T48 A;  4EZV A;  4EZQ A;  4EZY A;  4JN4 A;  4EZU A;  4JWI A;  1DKX A;  3T46 A;  3QNJ A;  3C7N A;  4HYB A;  1DKY A;  2QXL A;  4R5J A;  4B9Q A;  4JWE A;  4JNE A;  3DPP A;  3D2F A;  3T47 A;  4EZW A;  4H6H A;  4F00 A;  3DPQ A;  4R5K A;  2KHO A;  4EZX A;  3D2E A;  4JWC A;  4JNF A;  5E84 A;  4PO2 A;  4H6I A;  4R5G A;  4E81 A;  4EZN A;  3DPO A;  4HY9 A;  3T49 A;  4EZP A;  4EZO A;  4JWD A;  3OHX M;  1DKZ A;  4EZT A;  4EZS A;  4R5L A;  5TKY A;  4F01 A;  1U00 A;  4R5I A;  4EZR A;  4EZZ A;  3T4A G;  2WIN M;  2QFF A; 
#chains in the Genus database with same CATH topology
 3CVR A;  4JLC A;  2Z0N A;  4IM2 A;  3T47 A;  4EZX A;  2F7P A;  3T49 A;  2Z0O A;  3O3M B;  4R5L A;  4EZR A;  2ELB A;  2WIN M;  3QA8 A;  2JNK A;  4JN4 A;  4JWI A;  1GN9 A;  2YIV X;  1DKY A;  1R33 A;  2FIC A;  2D1L A;  4BNE A;  2ALW A;  1E9V A;  2KHO A;  2F1A A;  5C5B A;  4UDY X;  4EZN A;  1HXK A;  3HAH A;  3ACO A;  2EWF A;  2N3K A;  1SUF A;  2V0O A;  4NSW A;  3O3N B;  1JQK A;  3RPM A;  1TQU A;  1X03 A;  3RV0 A;  3VEA A;  2Q12 A;  3BUQ A;  3F7W A;  3D50 A;  4AZ6 A;  2F18 A;  1E1D A;  4R5K A;  3SYV A;  1URU A;  2MI7 A;  2X3X A;  4H6I A;  4AZ7 A;  3RV1 A;  1I49 A;  3EJQ A;  4AZC A;  4HY9 A;  4KIK A;  4EZT A;  1OA0 A;  3BUD A;  2RAK A;  3BVT A;  4IWP A;  3Q84 A;  4JNE A;  1Y2O A;  4D8J A;  3DDG A;  2RAI A;  3DX1 A;  3QNI A;  4EZO A;  1SU7 A;  4EZS A;  4IW0 A;  2PY6 A;  3T4A G;  1O7D C;  2YL9 A;  2OW6 A;  3ABH A;  3C7N A;  4HYB A;  4I1Q A;  1GNL A;  1WDZ A;  1SU8 A;  4WPE A;  3ER8 C;  2OZN B;  3EJP A;  2WYH A;  4PO2 A;  3BVU A;  2YKT A;  3OWG A;  2ND1 A;  3PLT A;  3OK8 A;  4EZZ A;  2YL6 A;  1O7D B;  3D52 A;  4EZV A;  4EZQ A;  3ER9 B;  3QE6 A;  4ATM A;  2EX3 B;  4NQI A;  1QWU A;  1HWW A;  3B53 X;  5E84 A;  2GF4 A;  1QWN A;  3BVV A;  4JWD A;  1TQS A;  1U00 A;  4IM0 A;  3I39 X;  3BLB A;  1DKX A;  1UPX A;  4R5J A;  2PMR A;  3LVT A;  3LLL A;  5C5B B;  1I4T A;  3BVX A;  3M3W A;  3G9G A;  3DX4 A;  3DDF A;  3QWE A;  3Q0K A;  2EFK A;  4HR1 A;  2LXY A;  4JWE A;  3DPP A;  4EZW A;  3B51 X;  4FZO A;  2EFL A;  4M0M A;  3EJS A;  2F1B A;  2X3V A;  4F01 A;  2Q13 A;  2JNS A;  2QFF A;  3VKH A;  4FM3 A;  3ZED A;  4HR1 B;  3SOG A;  4AZH A;  3CKD A;  3D2F A;  2GAF D;  2ND0 A;  3ERC C;  3KAW A;  4AZC B;  2F7Q A;  4KIK B;  3EJR A;  1GNT A;  3DPO A;  5TKY A;  3DYT A;  3I04 A;  4AZ5 A;  2RT6 A;  3T46 A;  3QNJ A;  3D51 A;  2RAJ A;  4H6H A;  4F00 A;  3D4Z A;  4JL9 A;  3DX0 A;  1ZWW A;  1TQW A;  3OHX M;  1R5E A;  1OA1 A;  3DX2 A;  2OO2 A;  2YIA A;  1W9M A;  3L3O M;  2YL8 A;  3B52 X;  2YL5 A;  3BUB A;  2GA9 D;  5FLE X;  2OW7 A;  2D4C A;  2YLL A;  3BUP A;  4FZP A;  4NPH A;  3D4Y A;  1ZYL A;  4IWO A;  3I2W A;  5FIG A;  4AKV A;  1HTY A;  2Z8Y A;  4WPC A;  1TQT A;  3UIT A;  3T48 A;  2QKW A;  2O0I 1;  4FZS A;  3HAJ A;  2F7R A;  3CAZ A;  2X3W A;  4E3C A;  1R34 A;  1SU6 A;  3GI7 A;  3I01 A;  3HAI A;  2F7O A;  4AZI A;  1QX1 A;  1LQ7 A;  4AVM A;  4EZY A;  1TQV A;  2NCZ A;  3O3O B;  4IM3 A;  2QXL A;  3L3P A;  1OAO A;  3DPQ A;  2ZXQ A;  4JWC A;  4JNF A;  3BVW A;  5KBP A;  4IWQ A;  4UDX X;  1E2U A;  4EZP A;  2OBL A;  4DYL A;  2WYI A;  2OBM A;  1MJG A;  2LM0 A;  3VEB A;  3LMF A;  1I4L A;  4H8S A;  4AZB A;  1I4D A;  2Z0V A;  3CZS A;  3D2E A;  3CV5 A;  4R5G A;  2C08 A;  4E81 A;  3EJT A;  4R5I A;  2X5C A;  4B9Q A;  2YI9 A;  3A98 A;  3KAV A;  4EZU A;  3KDR A;  3BUI A;  1YWM A;  3CZN A;  3FD9 A;  3DX3 A;  2YIB A;  4AZG A;  3EJU A;  1PS3 A;  4DCN C;  4G6Q A;  2FYV A;  1X04 A;  2YI8 A;  2YLA A;  1DKZ A; 
#chains in the Genus database with same CATH homology
 3UIT A;  3T48 A;  4JLC A;  4IWP A;  4HR1 A;  4JWE A;  4JNE A;  3DPP A;  4IM2 A;  3T47 A;  4EZW A;  4E3C A;  4EZX A;  4D8J A;  3B51 X;  1SU6 A;  3GI7 A;  4M0M A;  3I01 A;  3T49 A;  4EZO A;  1SU7 A;  4EZS A;  3O3M B;  4R5L A;  4IW0 A;  4F01 A;  4EZR A;  2PY6 A;  2JNS A;  3T4A G;  2WIN M;  2QFF A;  3QA8 A;  3VKH A;  4FM3 A;  3ZED A;  4HR1 B;  4EZY A;  4JN4 A;  2NCZ A;  4JWI A;  1GN9 A;  3O3O B;  2YIV X;  3C7N A;  1DKY A;  4HYB A;  4IM3 A;  2QXL A;  1GNL A;  1OAO A;  1SU8 A;  3D2F A;  3ER8 C;  1E9V A;  3DPQ A;  2GAF D;  2KHO A;  2ND0 A;  4JWC A;  3ERC C;  3KAW A;  4JNF A;  4PO2 A;  4KIK B;  4IWQ A;  4UDX X;  4UDY X;  1E2U A;  4EZN A;  1GNT A;  3DPO A;  3OWG A;  4EZP A;  2ND1 A;  2OBL A;  5TKY A;  2EWF A;  2N3K A;  4EZZ A;  3I04 A;  2OBM A;  1MJG A;  1SUF A;  2LM0 A;  4EZV A;  4EZQ A;  2RT6 A;  3ER9 B;  3LMF A;  3VEB A;  3T46 A;  3QNJ A;  3O3N B;  1JQK A;  2EX3 B;  4H6H A;  4F00 A;  3B53 X;  3D2E A;  5E84 A;  4JL9 A;  4R5G A;  4E81 A;  3RV0 A;  4JWD A;  3OHX M;  1U00 A;  1OA1 A;  4IM0 A;  2X5C A;  4R5I A;  2YIA A;  1W9M A;  4B9Q A;  2YI9 A;  3A98 A;  3VEA A;  3F7W A;  3KAV A;  3I39 X;  3L3O M;  4EZU A;  3KDR A;  3B52 X;  1DKX A;  1UPX A;  2GA9 D;  4R5J A;  3FD9 A;  5FLE X;  2YIB A;  1E1D A;  4NPH A;  4R5K A;  4G6Q A;  1ZYL A;  4IWO A;  2YI8 A;  5FIG A;  4H6I A;  3RV1 A;  4HY9 A;  4KIK A;  1DKZ A;  4EZT A;  1OA0 A;  2Z8Y A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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