2EX3B

Bacteriophage phi29 dna polymerase bound to terminal protein
Total Genus 55
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
55
sequence length
223
structure length
196
Chain Sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXANMRYQFEKNAYGVVASKAKIAEIERNTKEVQRLVDEKIKAMKDKEYYATGINRPHDFDFSKVRSYSRLRTLEESMEMRTDPQYYEKKMIQLQLNFIKSVEGSFNSFDAADELIEELKKIPPDDFYELFLRISEISGNTVENVEGNVYKILSYLEQYRRGDF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase/replication
molecule keywords DNA polymerase
publication title The phi29 DNA polymerase:protein-primer structure suggests a model for the initiation to elongation transition
pubmed doi rcsb
source organism Bacillus phage phi29
total genus 55
structure length 196
sequence length 223
chains with identical sequence D, F, H, J, L
ec nomenclature
pdb deposition date 2005-11-07
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1270.230 Mainly Alpha Up-down Bundle Substrate Binding Domain Of Dnak; Chain:A; Domain 2 Substrate Binding Domain Of Dnak; Chain:A; Domain 2 2ex3B02
2EX3B
chains in the Genus database with same CATH superfamily
1Y2OA 1OA1A 4AZHA 3EJTA 3KAVA 4AZCB 1DKYA 2C08A 3G9GA 2YLLA 3EJRA 2YI8A 4BNEA 3PLTA 4NQIA 2OW7A 1E2UA 2YL9A 1R33A 4IW0A 3BLBA 2ELBA 1I4DA 5FLEX 2F7PA 3CZSA 4H8SA 3DYTA 4AVMA 3HAJA 5E84A 2JNKA 2LXYA 4WPCA 4PO2A 4AZ6A 5TKYA 3ZEDA 3OK8A 3DDFA 4AZBA 2F7RA 4FZSA 2ND0A 4FZOA 2YI9A 3VEAA 3D52A 4AZGA 2WYIA 2QFFA 3BVUA 3LMFA 3DX3A 4EZZA 2YKTA 2F1BA 4KIKB 3D50A 3KAWA 3BUBA 2PY6A 3C7NA 5FIGA 3BVVA 4FZPA 1OA0A 3CV5A 2MI7A 3D2FA 1URUA 2WYHA 1DKXA 4JNEA 1HXKA 2EFLA 1GNLA 4DCNC 2X3VA 1TQVA 1TQTA 3ERCC 4IM2A 3BVWA 3QNJA 3QA8A 3OWGA 4HY9A 3ER8C 1GNTA 1R34A 4EZRA 1QWNA 4EZWA 2Z0NA 2OBMA 3QE6A 3ER9B 3FD9A 4EZXA 3QNIA 4NSWA 4EZOA 3I01A 4D8JA 1GN9A 2F18A 4JWDA 3DX4A 2ND1A 4AZCA 4NPHA 1OAOA 4JL9A 1W9MA 4AZ7A 1JQKA 3GI7A 1YWMA 4WPEA 3LVTA 1SUFA 4JN4A 3RV1A 3BVTA 4ATMA 3B53X 4EZTA 2OW6A 3CAZA 3EJSA 2YLAA 3DX2A 4EZUA 1UPXA 1O7DB 3I04A 2Z8YA 3DX0A 3BUIA 3D51A 2PMRA 4FM3A 4JWIA 1PS3A 2GAFD 3DPQA 4R5KA 4R5IA 2GA9D 4KIKA 4EZVA 2EX3B 4EZQA 2KHOA 3M3WA 3HAIA 1O7DC 1HWWA 3CKDA 2N3KA 4AZ5A 1TQSA 2OO2A 4R5GA 4R5JA 2RAKA 3EJUA 3CVRA 2YIBA 2QKWA 3Q84A 4JLCA 4HR1B 4IWPA 4HR1A 3CZNA 3T48A 1U00A 3I2WA 4EZSA 3D4ZA 2OZNB 2D1LA 3T46A 4G6QA 3DPPA 3D2EA 1I4TA 5C5BB 4UDXX 2D4CA 1I49A 3L3PA 1TQWA 2NCZA 3ABHA 3RPMA 4IWOA 1ZWWA 4F00A 3DDGA 2EWFA 1HTYA 4HYBA 4EZPA 1WDZA 2EFKA 3L3OM 2X3XA 1LQ7A 3B51X 3HAHA 4IM3A 3DX1A 3QWEA 1SU6A 4AZIA 4EZNA 4H6IA 2YL8A 3O3NB 4JWEA 2YIVX 2RAJA 3O3OB 3ACOA 1DKZA 3BUQA 2ALWA 3O3MB 3B52X 4E81A 2ZXQA 2WINM 3EJPA 3KDRA 3OHXM 2Q13A 2YL5A 2QXLA 1SU8A 1X03A 4JNFA 2FYVA 4H6HA 5KBPA 3VEBA 2OBLA 3UITA 3F7WA 2GF4A 2YL6A 3T4AG 3I39X 1QWUA 3D4YA 2Z0VA 4JWCA 3DPOA 2RAIA 1MJGA 3SYVA 3BUDA 4E3CA 1QX1A 4IM0A 2JNSA 1ZYLA 3BUPA 1SU7A 3VKHA 2O0I1 3T49A 1R5EA 1TQUA 2X5CA 3EJQA 2LM0A 5C5BA 4R5LA 4M0MA 1X04A 3Q0KA 2Q12A 2X3WA 4AKVA 2RT6A 3RV0A 2F7OA 2Z0OA 3T47A 2V0OA 1I4LA 3A98A 4B9QA 3LLLA 3BVXA 4I1QA 1E9VA 2F7QA 4F01A 4IWQA 4UDYX 2F1AA 4EZYA 2FICA 2YIAA 4DYLA 1E1DA 3SOGA
chains in the Genus database with same CATH topology
3O3MB 1OA1A 3KAVA 3B52X 4E81A 2N3KA 1DKYA 3ERCC 4IM2A 2WINM 4R5GA 3QNJA 3KDRA 3QA8A 3OWGA 4HY9A 2YI8A 4R5JA 3ER8C 3OHXM 1GNTA 4EZRA 2YIBA 4EZWA 2QXLA 1SU8A 1E2UA 4JNFA 4JLCA 4HR1B 2OBMA 3ER9B 4IWPA 4HR1A 3FD9A 4H6HA 4EZXA 4IW0A 4EZOA 5FLEX 3I01A 4D8JA 1GN9A 3VEBA 3T48A 4JWDA 1U00A 2OBLA 4EZSA 2ND1A 5E84A 4NPHA 1OAOA 3T46A 4PO2A 5TKYA 3ZEDA 4JL9A 3UITA 1W9MA 4G6QA 3DPPA 1JQKA 3D2EA 3F7WA 3GI7A 4EZQA 3T4AG 3I39X 4UDXX 1SUFA 4JWCA 4JN4A 2ND0A 3DPOA 3RV1A 2NCZA 2YI9A 3VEAA 1MJGA 4E3CA 4IM0A 2JNSA 4IWOA 1ZYLA 3B53X 4EZTA 4F00A 2QFFA 2EWFA 3LMFA 1SU7A 3VKHA 4HYBA 4EZZA 3T49A 4EZPA 2X5CA 1DKZA 2LM0A 4KIKB 4R5LA 4M0MA 3L3OM 3B51X 3KAWA 2PY6A 3C7NA 2RT6A 3RV0A 5FIGA 1UPXA 4IM3A 3I04A 4EZUA 2Z8YA 1OA0A 3T47A 3D2FA 1SU6A 3A98A 4B9QA 4EZNA 1DKXA 4H6IA 4JNEA 3O3NB 4JWEA 2YIVX 4FM3A 4JWIA 1E9VA 4F01A 2GAFD 4IWQA 3DPQA 4UDYX 4R5KA 4R5IA 2GA9D 3O3OB 1GNLA 4KIKA 4EZVA 4EZYA 2YIAA 2EX3B 2KHOA 1E1DA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2EX3 B; 
#chains in the Genus database with same CATH topology
 1Y2O A;  1OA1 A;  4AZH A;  3EJT A;  3KAV A;  4AZC B;  1DKY A;  2C08 A;  3G9G A;  2YLL A;  3EJR A;  2YI8 A;  4BNE A;  3PLT A;  4NQI A;  2OW7 A;  1E2U A;  2YL9 A;  1R33 A;  4IW0 A;  3BLB A;  2ELB A;  1I4D A;  5FLE X;  2F7P A;  3CZS A;  4H8S A;  3DYT A;  4AVM A;  3HAJ A;  5E84 A;  2JNK A;  2LXY A;  4WPC A;  4PO2 A;  4AZ6 A;  5TKY A;  3ZED A;  3OK8 A;  3DDF A;  4AZB A;  2F7R A;  4FZS A;  2ND0 A;  4FZO A;  2YI9 A;  3VEA A;  3D52 A;  4AZG A;  2WYI A;  2QFF A;  3BVU A;  3LMF A;  3DX3 A;  4EZZ A;  2YKT A;  2F1B A;  4KIK B;  3D50 A;  3KAW A;  3BUB A;  2PY6 A;  3C7N A;  5FIG A;  3BVV A;  4FZP A;  1OA0 A;  3CV5 A;  2MI7 A;  3D2F A;  1URU A;  2WYH A;  1DKX A;  4JNE A;  1HXK A;  2EFL A;  1GNL A;  4DCN C;  2X3V A;  1TQV A;  1TQT A;  3ERC C;  4IM2 A;  3BVW A;  3QNJ A;  3QA8 A;  3OWG A;  4HY9 A;  3ER8 C;  1GNT A;  1R34 A;  4EZR A;  1QWN A;  4EZW A;  2Z0N A;  2OBM A;  3QE6 A;  3ER9 B;  3FD9 A;  4EZX A;  3QNI A;  4NSW A;  4EZO A;  3I01 A;  4D8J A;  1GN9 A;  2F18 A;  4JWD A;  3DX4 A;  2ND1 A;  4AZC A;  4NPH A;  1OAO A;  4JL9 A;  1W9M A;  4AZ7 A;  1JQK A;  3GI7 A;  1YWM A;  4WPE A;  3LVT A;  1SUF A;  4JN4 A;  3RV1 A;  3BVT A;  4ATM A;  3B53 X;  4EZT A;  2OW6 A;  3CAZ A;  3EJS A;  2YLA A;  3DX2 A;  4EZU A;  1UPX A;  1O7D B;  3I04 A;  2Z8Y A;  3DX0 A;  3BUI A;  3D51 A;  2PMR A;  4FM3 A;  4JWI A;  1PS3 A;  2GAF D;  3DPQ A;  4R5K A;  4R5I A;  2GA9 D;  4KIK A;  4EZV A;  2EX3 B;  4EZQ A;  2KHO A;  3M3W A;  3HAI A;  1O7D C;  1HWW A;  3CKD A;  2N3K A;  4AZ5 A;  1TQS A;  2OO2 A;  4R5G A;  4R5J A;  2RAK A;  3EJU A;  3CVR A;  2YIB A;  2QKW A;  3Q84 A;  4JLC A;  4HR1 B;  4IWP A;  4HR1 A;  3CZN A;  3T48 A;  1U00 A;  3I2W A;  4EZS A;  3D4Z A;  2OZN B;  2D1L A;  3T46 A;  4G6Q A;  3DPP A;  3D2E A;  1I4T A;  5C5B B;  4UDX X;  2D4C A;  1I49 A;  3L3P A;  1TQW A;  2NCZ A;  3ABH A;  3RPM A;  4IWO A;  1ZWW A;  4F00 A;  3DDG A;  2EWF A;  1HTY A;  4HYB A;  4EZP A;  1WDZ A;  2EFK A;  3L3O M;  2X3X A;  1LQ7 A;  3B51 X;  3HAH A;  4IM3 A;  3DX1 A;  3QWE A;  1SU6 A;  4AZI A;  4EZN A;  4H6I A;  2YL8 A;  3O3N B;  4JWE A;  2YIV X;  2RAJ A;  3O3O B;  3ACO A;  1DKZ A;  3BUQ A;  2ALW A;  3O3M B;  3B52 X;  4E81 A;  2ZXQ A;  2WIN M;  3EJP A;  3KDR A;  3OHX M;  2Q13 A;  2YL5 A;  2QXL A;  1SU8 A;  1X03 A;  4JNF A;  2FYV A;  4H6H A;  5KBP A;  3VEB A;  2OBL A;  3UIT A;  3F7W A;  2GF4 A;  2YL6 A;  3T4A G;  3I39 X;  1QWU A;  3D4Y A;  2Z0V A;  4JWC A;  3DPO A;  2RAI A;  1MJG A;  3SYV A;  3BUD A;  4E3C A;  1QX1 A;  4IM0 A;  2JNS A;  1ZYL A;  3BUP A;  1SU7 A;  3VKH A;  2O0I 1;  3T49 A;  1R5E A;  1TQU A;  2X5C A;  3EJQ A;  2LM0 A;  5C5B A;  4R5L A;  4M0M A;  1X04 A;  3Q0K A;  2Q12 A;  2X3W A;  4AKV A;  2RT6 A;  3RV0 A;  2F7O A;  2Z0O A;  3T47 A;  2V0O A;  1I4L A;  3A98 A;  4B9Q A;  3LLL A;  3BVX A;  4I1Q A;  1E9V A;  2F7Q A;  4F01 A;  4IWQ A;  4UDY X;  2F1A A;  4EZY A;  2FIC A;  2YIA A;  4DYL A;  1E1D A;  3SOG A; 
#chains in the Genus database with same CATH homology
 3O3M B;  1OA1 A;  3KAV A;  3B52 X;  4E81 A;  2N3K A;  1DKY A;  3ERC C;  4IM2 A;  2WIN M;  4R5G A;  3QNJ A;  3KDR A;  3QA8 A;  3OWG A;  4HY9 A;  2YI8 A;  4R5J A;  3ER8 C;  3OHX M;  1GNT A;  4EZR A;  2YIB A;  4EZW A;  2QXL A;  1SU8 A;  1E2U A;  4JNF A;  4JLC A;  4HR1 B;  2OBM A;  3ER9 B;  4IWP A;  4HR1 A;  3FD9 A;  4H6H A;  4EZX A;  4IW0 A;  4EZO A;  5FLE X;  3I01 A;  4D8J A;  1GN9 A;  3VEB A;  3T48 A;  4JWD A;  1U00 A;  2OBL A;  4EZS A;  2ND1 A;  5E84 A;  4NPH A;  1OAO A;  3T46 A;  4PO2 A;  5TKY A;  3ZED A;  4JL9 A;  3UIT A;  1W9M A;  4G6Q A;  3DPP A;  1JQK A;  3D2E A;  3F7W A;  3GI7 A;  4EZQ A;  3T4A G;  3I39 X;  4UDX X;  1SUF A;  4JWC A;  4JN4 A;  2ND0 A;  3DPO A;  3RV1 A;  2NCZ A;  2YI9 A;  3VEA A;  1MJG A;  4E3C A;  4IM0 A;  2JNS A;  4IWO A;  1ZYL A;  3B53 X;  4EZT A;  4F00 A;  2QFF A;  2EWF A;  3LMF A;  1SU7 A;  3VKH A;  4HYB A;  4EZZ A;  3T49 A;  4EZP A;  2X5C A;  1DKZ A;  2LM0 A;  4KIK B;  4R5L A;  4M0M A;  3L3O M;  3B51 X;  3KAW A;  2PY6 A;  3C7N A;  2RT6 A;  3RV0 A;  5FIG A;  1UPX A;  4IM3 A;  3I04 A;  4EZU A;  2Z8Y A;  1OA0 A;  3T47 A;  3D2F A;  1SU6 A;  3A98 A;  4B9Q A;  4EZN A;  1DKX A;  4H6I A;  4JNE A;  3O3N B;  4JWE A;  2YIV X;  4FM3 A;  4JWI A;  1E9V A;  4F01 A;  2GAF D;  4IWQ A;  3DPQ A;  4UDY X;  4R5K A;  4R5I A;  2GA9 D;  3O3O B;  1GNL A;  4KIK A;  4EZV A;  4EZY A;  2YIA A;  2EX3 B;  2KHO A;  1E1D A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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