2X3WA

Structure of mouse syndapin i (crystal form 2)
Total Genus 126
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
126
sequence length
291
structure length
291
Chain Sequence
DSFWEVGNYKRTVKRIDDGHRLCNDLMSCVQERAKIEKAYAQQLTDWAKRWRQLIEKGPQYGSLERAWGAMMTEADKVSELHQEVKNSLLNEDLEKVKNWQKDAYHKQIMGGFKETKEAEDGFRKAQKPWAKKMKELEAAKKAYHLACKEERLAMTREMNSKTEQSVTPEQQKKLVDKVDKCRQDVQKTQEKYEKVLEDVGKTTPQYMEGMEQVFEQCQQFEEKRLVFLKEVLLDIKRHLNLAENSSYMHVYRELEQAIRGADAQEDLRWFRSTSGPGMPMNWPQFEEWNP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Endocytosis
source organism Mus musculus
publication title Molecular Basis for SH3 Domain Regulation of F-Bar-Mediated Membrane Deformation.
pubmed doi rcsb
molecule keywords PROTEIN KINASE C AND CASEIN KINASE SUBSTRATE IN NEURONS PROT
total genus 126
structure length 291
sequence length 291
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2010-01-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00611 FCH Fes/CIP4, and EFC/F-BAR homology domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1270.60 Mainly Alpha Up-down Bundle Substrate Binding Domain Of Dnak; Chain:A; Domain 2 Arfaptin homology (AH) domain/BAR domain 2x3wA01
2FICA 4WPEA 3HAIA 4H8SA 2X3VA 3I2WA 4WPCA 4DYLA 3SYVA 4DCNC 4ATMA 2X3WA 1X03A 1URUA 2RAIA 1I4DA 2YKTA 2Z0OA 3ABHA 3CAZA 4FZSA 3QWEA 1I49A 2Z0NA 3HAHA 3Q0KA 2V0OA 2RAKA 1WDZA 3SOGA 5C5BA 3PLTA 1ZWWA 2C08A 4AKVA 1X04A 3G9GA 3M3WA 2RAJA 2X3XA 3DYTA 2Q12A 1I4LA 2ELBA 4BNEA 2D4CA 4I1QA 2EFKA 3QNIA 4NSWA 5C5BB 4AVMA 3Q84A 3QE6A 1I4TA 2Q13A 3LLLA 4NQIA 1Y2OA 2D1LA 2EFLA 3HAJA 3ACOA 2Z0VA 3OK8A
chains in the Genus database with same CATH superfamily
3HAIA 4H8SA 2YLLA 2F18A 2JNSA 4EZQA 3LMFA 2KHOA 5FIGA 1DKYA 2V0OA 3B53X 1ZWWA 2RAJA 4IWPA 4R5GA 3D2EA 3GI7A 1SUFA 4F00A 4EZTA 2F7QA 2OW6A 1MJGA 3ABHA 2RAIA 1I4DA 2GA9D 4FZOA 3B52X 3L3OM 4AZGA 2OO2A 3QNIA 5C5BB 2YL6A 5E84A 3OWGA 3RPMA 3A98A 3RV0A 4JN4A 4IM2A 2ALWA 4UDXX 3SYVA 3VEAA 4IM3A 3QWEA 2YIVX 3M3WA 3T49A 3VKHA 1QX1A 2X5CA 4E81A 1SU6A 1Y2OA 1O7DC 3HAJA 1U00A 4WPEA 4EZRA 4ATMA 3CAZA 3D50A 3G9GA 3BVWA 1E9VA 3DDGA 4EZVA 2EFLA 4H6IA 2MI7A 2FICA 3B51X 1UPXA 3EJUA 1X03A 3Q0KA 4JLCA 4HR1A 1QWNA 1TQSA 3DPPA 4H6HA 4JL9A 2NCZA 4AZ5A 3FD9A 4JNEA 3D2FA 1R34A 2O0I1 1PS3A 3EJPA 2F7PA 2OW7A 3DPOA 4AKVA 1JQKA 4G6QA 2D4CA 2EX3B 3EJTA 3QE6A 3EJSA 2LXYA 3C7NA 3D52A 3BUIA 2F1AA 4UDYX 2Z8YA 4DCNC 2X3WA 1URUA 4R5IA 4EZSA 3F7WA 2YL8A 3ERCC 4JNFA 4AZIA 2ND1A 4NSWA 4IM0A 3OHXM 4NQIA 3KDRA 4PO2A 4R5LA 4WPCA 3BUQA 2LM0A 4IW0A 1X04A 2X3XA 3DDFA 4EZOA 4I1QA 2WINM 2ND0A 4IWOA 2YI9A 4EZYA 3KAVA 1W9MA 1TQTA 2C08A 4FZPA 2Q12A 3DX0A 3ZEDA 2EFKA 3BVUA 2RT6A 4HR1B 1QWUA 3I01A 3QA8A 3DX1A 1O7DB 4HY9A 4AZCA 3CV5A 1ZYLA 4B9QA 2QXLA 3T46A 3T47A 2YI8A 3CKDA 3EJQA 4JWDA 2QFFA 2ZXQA 2YIAA 1GNLA 3ER8C 3BUPA 5TKYA 3O3NB 2YIBA 2WYHA 1OA1A 4EZXA 2Z0NA 4M0MA 3T48A 2RAKA 1WDZA 3SOGA 1DKXA 3BUBA 2FYVA 1OAOA 3LLLA 2JNKA 1TQWA 3I39X 3QNJA 4NPHA 1TQUA 3UITA 3D4ZA 3CVRA 3ER9B 2EWFA 1LQ7A 4R5JA 2YL5A 1I4LA 4KIKA 4EZWA 3DPQA 3BLBA 4AVMA 2GAFD 2F7OA 1E2UA 1YWMA 1HWWA 3O3OB 4FZSA 1R5EA 2OZNB 2PMRA 4JWCA 1GNTA 4AZ7A 2ELBA 3DX2A 4EZZA 2OBMA 4JWIA 1GN9A 3Q84A 4JWEA 3CZNA 3I2WA 3L3PA 1DKZA 2X3VA 2YL9A 2WYIA 4E3CA 3D51A 2YKTA 3D4YA 4FM3A 4AZCB 3DX3A 5C5BA 4EZNA 1TQVA 3KAWA 4AZ6A 1HXKA 4HYBA 2Q13A 2D1LA 4F01A 3BVVA 3ACOA 2Z0VA 2QKWA 4DYLA 3CZSA 1SU8A 4R5KA 2GF4A 1HTYA 1SU7A 1I49A 1R33A 3PLTA 3RV1A 3VEBA 3BVTA 5FLEX 4IWQA 3LVTA 3T4AG 4EZPA 3DX4A 2N3KA 3OK8A 2F1BA 2OBLA 1OA0A 3I04A 4EZUA 1E1DA 2Z0OA 3HAHA 5KBPA 3O3MB 2PY6A 4AZBA 3DYTA 4BNEA 3EJRA 4AZHA 3BUDA 4D8JA 2F7RA 1I4TA 3BVXA 2YLAA 4KIKB
chains in the Genus database with same CATH topology
2FICA 4WPEA 3HAIA 4H8SA 2X3VA 3I2WA 4WPCA 4DYLA 3SYVA 4DCNC 4ATMA 2X3WA 1X03A 1URUA 2RAIA 1I4DA 2YKTA 2Z0OA 3ABHA 3CAZA 4FZSA 3QWEA 1I49A 2Z0NA 3HAHA 3Q0KA 2V0OA 2RAKA 1WDZA 3SOGA 5C5BA 3PLTA 1ZWWA 2C08A 4AKVA 1X04A 3G9GA 3M3WA 2RAJA 2X3XA 3DYTA 2Q12A 1I4LA 2ELBA 4BNEA 2D4CA 4I1QA 2EFKA 3QNIA 4NSWA 5C5BB 4AVMA 3Q84A 3QE6A 1I4TA 2Q13A 3LLLA 4NQIA 1Y2OA 2D1LA 2EFLA 3HAJA 3ACOA 2Z0VA 3OK8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2FIC A;  4WPE A;  3HAI A;  4H8S A;  2X3V A;  3I2W A;  4WPC A;  4DYL A;  3SYV A;  4DCN C;  4ATM A;  2X3W A;  1X03 A;  1URU A;  2RAI A;  1I4D A;  2YKT A;  2Z0O A;  3ABH A;  3CAZ A;  4FZS A;  3QWE A;  1I49 A;  2Z0N A;  3HAH A;  3Q0K A;  2V0O A;  2RAK A;  1WDZ A;  3SOG A;  5C5B A;  3PLT A;  1ZWW A;  2C08 A;  4AKV A;  1X04 A;  3G9G A;  3M3W A;  2RAJ A;  2X3X A;  3DYT A;  2Q12 A;  1I4L A;  2ELB A;  4BNE A;  2D4C A;  4I1Q A;  2EFK A;  3QNI A;  4NSW A;  5C5B B;  4AVM A;  3Q84 A;  3QE6 A;  1I4T A;  2Q13 A;  3LLL A;  4NQI A;  1Y2O A;  2D1L A;  2EFL A;  3HAJ A;  3ACO A;  2Z0V A;  3OK8 A; 
#chains in the Genus database with same CATH topology
 3HAI A;  4H8S A;  2YLL A;  2F18 A;  2JNS A;  4EZQ A;  3LMF A;  2KHO A;  5FIG A;  1DKY A;  2V0O A;  3B53 X;  1ZWW A;  2RAJ A;  4IWP A;  4R5G A;  3D2E A;  3GI7 A;  1SUF A;  4F00 A;  4EZT A;  2F7Q A;  2OW6 A;  1MJG A;  3ABH A;  2RAI A;  1I4D A;  2GA9 D;  4FZO A;  3B52 X;  3L3O M;  4AZG A;  2OO2 A;  3QNI A;  5C5B B;  2YL6 A;  5E84 A;  3OWG A;  3RPM A;  3A98 A;  3RV0 A;  4JN4 A;  4IM2 A;  2ALW A;  4UDX X;  3SYV A;  3VEA A;  4IM3 A;  3QWE A;  2YIV X;  3M3W A;  3T49 A;  3VKH A;  1QX1 A;  2X5C A;  4E81 A;  1SU6 A;  1Y2O A;  1O7D C;  3HAJ A;  1U00 A;  4WPE A;  4EZR A;  4ATM A;  3CAZ A;  3D50 A;  3G9G A;  3BVW A;  1E9V A;  3DDG A;  4EZV A;  2EFL A;  4H6I A;  2MI7 A;  2FIC A;  3B51 X;  1UPX A;  3EJU A;  1X03 A;  3Q0K A;  4JLC A;  4HR1 A;  1QWN A;  1TQS A;  3DPP A;  4H6H A;  4JL9 A;  2NCZ A;  4AZ5 A;  3FD9 A;  4JNE A;  3D2F A;  1R34 A;  2O0I 1;  1PS3 A;  3EJP A;  2F7P A;  2OW7 A;  3DPO A;  4AKV A;  1JQK A;  4G6Q A;  2D4C A;  2EX3 B;  3EJT A;  3QE6 A;  3EJS A;  2LXY A;  3C7N A;  3D52 A;  3BUI A;  2F1A A;  4UDY X;  2Z8Y A;  4DCN C;  2X3W A;  1URU A;  4R5I A;  4EZS A;  3F7W A;  2YL8 A;  3ERC C;  4JNF A;  4AZI A;  2ND1 A;  4NSW A;  4IM0 A;  3OHX M;  4NQI A;  3KDR A;  4PO2 A;  4R5L A;  4WPC A;  3BUQ A;  2LM0 A;  4IW0 A;  1X04 A;  2X3X A;  3DDF A;  4EZO A;  4I1Q A;  2WIN M;  2ND0 A;  4IWO A;  2YI9 A;  4EZY A;  3KAV A;  1W9M A;  1TQT A;  2C08 A;  4FZP A;  2Q12 A;  3DX0 A;  3ZED A;  2EFK A;  3BVU A;  2RT6 A;  4HR1 B;  1QWU A;  3I01 A;  3QA8 A;  3DX1 A;  1O7D B;  4HY9 A;  4AZC A;  3CV5 A;  1ZYL A;  4B9Q A;  2QXL A;  3T46 A;  3T47 A;  2YI8 A;  3CKD A;  3EJQ A;  4JWD A;  2QFF A;  2ZXQ A;  2YIA A;  1GNL A;  3ER8 C;  3BUP A;  5TKY A;  3O3N B;  2YIB A;  2WYH A;  1OA1 A;  4EZX A;  2Z0N A;  4M0M A;  3T48 A;  2RAK A;  1WDZ A;  3SOG A;  1DKX A;  3BUB A;  2FYV A;  1OAO A;  3LLL A;  2JNK A;  1TQW A;  3I39 X;  3QNJ A;  4NPH A;  1TQU A;  3UIT A;  3D4Z A;  3CVR A;  3ER9 B;  2EWF A;  1LQ7 A;  4R5J A;  2YL5 A;  1I4L A;  4KIK A;  4EZW A;  3DPQ A;  3BLB A;  4AVM A;  2GAF D;  2F7O A;  1E2U A;  1YWM A;  1HWW A;  3O3O B;  4FZS A;  1R5E A;  2OZN B;  2PMR A;  4JWC A;  1GNT A;  4AZ7 A;  2ELB A;  3DX2 A;  4EZZ A;  2OBM A;  4JWI A;  1GN9 A;  3Q84 A;  4JWE A;  3CZN A;  3I2W A;  3L3P A;  1DKZ A;  2X3V A;  2YL9 A;  2WYI A;  4E3C A;  3D51 A;  2YKT A;  3D4Y A;  4FM3 A;  4AZC B;  3DX3 A;  5C5B A;  4EZN A;  1TQV A;  3KAW A;  4AZ6 A;  1HXK A;  4HYB A;  2Q13 A;  2D1L A;  4F01 A;  3BVV A;  3ACO A;  2Z0V A;  2QKW A;  4DYL A;  3CZS A;  1SU8 A;  4R5K A;  2GF4 A;  1HTY A;  1SU7 A;  1I49 A;  1R33 A;  3PLT A;  3RV1 A;  3VEB A;  3BVT A;  5FLE X;  4IWQ A;  3LVT A;  3T4A G;  4EZP A;  3DX4 A;  2N3K A;  3OK8 A;  2F1B A;  2OBL A;  1OA0 A;  3I04 A;  4EZU A;  1E1D A;  2Z0O A;  3HAH A;  5KBP A;  3O3M B;  2PY6 A;  4AZB A;  3DYT A;  4BNE A;  3EJR A;  4AZH A;  3BUD A;  4D8J A;  2F7R A;  1I4T A;  3BVX A;  2YLA A;  4KIK B; 
#chains in the Genus database with same CATH homology
 2FIC A;  4WPE A;  3HAI A;  4H8S A;  2X3V A;  3I2W A;  4WPC A;  4DYL A;  3SYV A;  4DCN C;  4ATM A;  2X3W A;  1X03 A;  1URU A;  2RAI A;  1I4D A;  2YKT A;  2Z0O A;  3ABH A;  3CAZ A;  4FZS A;  3QWE A;  1I49 A;  2Z0N A;  3HAH A;  3Q0K A;  2V0O A;  2RAK A;  1WDZ A;  3SOG A;  5C5B A;  3PLT A;  1ZWW A;  2C08 A;  4AKV A;  1X04 A;  3G9G A;  3M3W A;  2RAJ A;  2X3X A;  3DYT A;  2Q12 A;  1I4L A;  2ELB A;  4BNE A;  2D4C A;  4I1Q A;  2EFK A;  3QNI A;  4NSW A;  5C5B B;  4AVM A;  3Q84 A;  3QE6 A;  1I4T A;  2Q13 A;  3LLL A;  4NQI A;  1Y2O A;  2D1L A;  2EFL A;  3HAJ A;  3ACO A;  2Z0V A;  3OK8 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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