2Q12A

Crystal structure of bar domain of appl1
Total Genus 99
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
99
sequence length
247
structure length
242
Chain Sequence
LEDSPQTRSLLGVFEEDATAISNYMNQLYQAMHRIYDAQNELSAATHLTSKLLKEYEKQRFPEVMSSTLQQFSKVIDELSSCHAVLSTQLADAMMFPITQFKERDLKEILTLKEVFQIASNDHDAAINRYSRLSKKRENDKVKYEVTEDVYTSRKKQHQTMMHYFCALNTLQYKKKIALLEPLLGYMQAQISFFKMGSENLNEQLEEFLANIGTSVQNVRREMDSDIETMQQTIEDLEVASD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Protein transport
molecule keywords DCC-interacting protein 13 alpha
publication title Structure of the APPL1 BAR-PH domain and characterization of its interaction with Rab5.
pubmed doi rcsb
source organism Homo sapiens
total genus 99
structure length 242
sequence length 247
ec nomenclature
pdb deposition date 2007-05-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF16746 BAR_3 BAR domain of APPL family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1270.60 Mainly Alpha Up-down Bundle Substrate Binding Domain Of Dnak; Chain:A; Domain 2 Arfaptin homology (AH) domain/BAR domain 2q12A00
2RAKA 3QNIA 1X04A 4BNEA 4DCNC 3I2WA 2Z0VA 3CAZA 3HAJA 3PLTA 5C5BB 2Q12A 2X3XA 1X03A 4NQIA 1I4TA 1ZWWA 3QWEA 1Y2OA 2YKTA 2D4CA 2Z0OA 1I4DA 2D1LA 2RAJA 3M3WA 1I49A 4FZSA 4NSWA 4ATMA 4AVMA 3ABHA 3HAHA 3DYTA 3ACOA 3HAIA 3Q0KA 2RAIA 4I1QA 2ELBA 2Q13A 2Z0NA 2EFKA 2FICA 2X3WA 3G9GA 3QE6A 3LLLA 2EFLA 4AKVA 5C5BA 4DYLA 2V0OA 4WPCA 1WDZA 1URUA 3Q84A 3SYVA 2X3VA 4H8SA 3SOGA 4WPEA 2C08A 3OK8A 1I4LA
chains in the Genus database with same CATH superfamily
3L3OM 1TQUA 2X5CA 3CAZA 2Q12A 1ZWWA 3OWGA 2YKTA 2D1LA 4EZTA 1SU8A 4JWEA 4AZIA 2EFLA 2RT6A 2WYIA 3CV5A 1QWNA 1TQTA 4B9QA 3SYVA 4EZWA 2YLAA 4EZZA 2F7OA 2YI9A 3PLTA 2LXYA 4E81A 3FD9A 2JNKA 3D51A 2EWFA 5E84A 3T48A 1HWWA 3QNJA 1GNLA 2Q13A 2EFKA 4R5GA 3KDRA 4AZHA 4JWCA 3ZEDA 3BUQA 4HY9A 3DPQA 3RV1A 2YIBA 4DCNC 3EJQA 1SU6A 4FM3A 2PMRA 3DPOA 3F7WA 2LM0A 4NQIA 2YL8A 5FLEX 2OO2A 1R34A 3DPPA 2RAJA 4EZQA 4IWQA 2ELBA 3BUPA 4WPCA 4KIKA 2O0I1 2F1BA 4JWDA 4PO2A 3B51X 3RV0A 3QWEA 1Y2OA 3KAWA 2EX3B 3T4AG 4R5KA 3I39X 1SUFA 3LLLA 2OBMA 5KBPA 4R5LA 3T46A 3DDFA 3UITA 4UDYX 3DX3A 2YL6A 4HR1A 4H6IA 3ERCC 3L3PA 3DX0A 4NSWA 4EZXA 3DYTA 3Q0KA 2F7RA 2X3VA 4M0MA 1OA0A 1HXKA 3B52X 3D52A 3O3MB 1E9VA 3O3NB 4R5JA 2D4CA 3QA8A 4JLCA 3ABHA 3HAHA 4EZYA 3EJSA 2V0OA 3BUDA 3G9GA 2RAKA 3QNIA 3LMFA 2Z0OA 4EZNA 3DX2A 3M3WA 2FYVA 2RAIA 4I1QA 2X3WA 1E2UA 3D50A 3RPMA 3Q84A 3OHXM 3OK8A 3SOGA 4IWOA 5C5BB 1DKYA 4IW0A 1MJGA 1OA1A 2X3XA 3BVVA 4AZBA 4FZSA 2KHOA 3CZSA 3I01A 2YI8A 3D2FA 1R33A 4EZVA 3T47A 3ER8C 1E1DA 4ATMA 2GF4A 3ACOA 4IM3A 2FICA 3BUBA 4EZSA 2YIVX 3EJUA 3B53X 2F7QA 4BNEA 4EZRA 3HAJA 2F1AA 4JN4A 3LVTA 3QE6A 2ZXQA 4HYBA 3D4ZA 4DYLA 3D2EA 1URUA 4H8SA 4F01A 1TQVA 3VKHA 1ZYLA 3DX1A 1X04A 2QFFA 2F7PA 1I4TA 4D8JA 3EJRA 4EZPA 3HAIA 4FZOA 2GA9D 4JNEA 3EJPA 2N3KA 4AZCB 3D4YA 1I4LA 4JWIA 4AZ6A 2OW7A 4AZGA 5TKYA 4F00A 1O7DB 1R5EA 2QXLA 3ER9B 1I49A 4IWPA 1SU7A 4AZCA 2YL9A 3KAVA 2PY6A 4WPEA 4FZPA 3BUIA 3I2WA 1JQKA 3O3OB 4G6QA 1OAOA 1UPXA 1X03A 2OBLA 3T49A 1W9MA 1QX1A 3BVWA 5FIGA 2ALWA 1O7DC 2ND0A 3EJTA 5C5BA 3DX4A 1PS3A 2YLLA 2Z8YA 4AZ7A 3I04A 2Z0VA 3A98A 3BVTA 4KIKB 1HTYA 4R5IA 1LQ7A 1U00A 3VEBA 4EZUA 4AKVA 2QKWA 4UDXX 3C7NA 2GAFD 1TQSA 2C08A 1GNTA 2WINM 2NCZA 4IM2A 2F18A 4E3CA 2WYHA 2OZNB 4HR1B 1GN9A 2Z0NA 3BVUA 3DDGA 4IM0A 2MI7A 3CVRA 4H6HA 3BLBA 4NPHA 2JNSA 1TQWA 4JNFA 1YWMA 4EZOA 1I4DA 1DKXA 3BVXA 3CZNA 4AVMA 3VEAA 3GI7A 2YIAA 4JL9A 1DKZA 2OW6A 2ND1A 1WDZA 1QWUA 4AZ5A 2YL5A 3CKDA
chains in the Genus database with same CATH topology
2RAKA 3QNIA 1X04A 4BNEA 4DCNC 3I2WA 2Z0VA 3CAZA 3HAJA 3PLTA 5C5BB 2Q12A 2X3XA 1X03A 4NQIA 1I4TA 1ZWWA 3QWEA 1Y2OA 2YKTA 2D4CA 2Z0OA 1I4DA 2D1LA 2RAJA 3M3WA 1I49A 4FZSA 4NSWA 4ATMA 4AVMA 3ABHA 3HAHA 3DYTA 3ACOA 3HAIA 3Q0KA 2RAIA 4I1QA 2ELBA 2Q13A 2Z0NA 2EFKA 2FICA 2X3WA 3G9GA 3QE6A 3LLLA 2EFLA 4AKVA 5C5BA 4DYLA 2V0OA 4WPCA 1WDZA 1URUA 3Q84A 3SYVA 2X3VA 4H8SA 3SOGA 4WPEA 2C08A 3OK8A 1I4LA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2RAK A;  3QNI A;  1X04 A;  4BNE A;  4DCN C;  3I2W A;  2Z0V A;  3CAZ A;  3HAJ A;  3PLT A;  5C5B B;  2Q12 A;  2X3X A;  1X03 A;  4NQI A;  1I4T A;  1ZWW A;  3QWE A;  1Y2O A;  2YKT A;  2D4C A;  2Z0O A;  1I4D A;  2D1L A;  2RAJ A;  3M3W A;  1I49 A;  4FZS A;  4NSW A;  4ATM A;  4AVM A;  3ABH A;  3HAH A;  3DYT A;  3ACO A;  3HAI A;  3Q0K A;  2RAI A;  4I1Q A;  2ELB A;  2Q13 A;  2Z0N A;  2EFK A;  2FIC A;  2X3W A;  3G9G A;  3QE6 A;  3LLL A;  2EFL A;  4AKV A;  5C5B A;  4DYL A;  2V0O A;  4WPC A;  1WDZ A;  1URU A;  3Q84 A;  3SYV A;  2X3V A;  4H8S A;  3SOG A;  4WPE A;  2C08 A;  3OK8 A;  1I4L A; 
#chains in the Genus database with same CATH topology
 3L3O M;  1TQU A;  2X5C A;  3CAZ A;  2Q12 A;  1ZWW A;  3OWG A;  2YKT A;  2D1L A;  4EZT A;  1SU8 A;  4JWE A;  4AZI A;  2EFL A;  2RT6 A;  2WYI A;  3CV5 A;  1QWN A;  1TQT A;  4B9Q A;  3SYV A;  4EZW A;  2YLA A;  4EZZ A;  2F7O A;  2YI9 A;  3PLT A;  2LXY A;  4E81 A;  3FD9 A;  2JNK A;  3D51 A;  2EWF A;  5E84 A;  3T48 A;  1HWW A;  3QNJ A;  1GNL A;  2Q13 A;  2EFK A;  4R5G A;  3KDR A;  4AZH A;  4JWC A;  3ZED A;  3BUQ A;  4HY9 A;  3DPQ A;  3RV1 A;  2YIB A;  4DCN C;  3EJQ A;  1SU6 A;  4FM3 A;  2PMR A;  3DPO A;  3F7W A;  2LM0 A;  4NQI A;  2YL8 A;  5FLE X;  2OO2 A;  1R34 A;  3DPP A;  2RAJ A;  4EZQ A;  4IWQ A;  2ELB A;  3BUP A;  4WPC A;  4KIK A;  2O0I 1;  2F1B A;  4JWD A;  4PO2 A;  3B51 X;  3RV0 A;  3QWE A;  1Y2O A;  3KAW A;  2EX3 B;  3T4A G;  4R5K A;  3I39 X;  1SUF A;  3LLL A;  2OBM A;  5KBP A;  4R5L A;  3T46 A;  3DDF A;  3UIT A;  4UDY X;  3DX3 A;  2YL6 A;  4HR1 A;  4H6I A;  3ERC C;  3L3P A;  3DX0 A;  4NSW A;  4EZX A;  3DYT A;  3Q0K A;  2F7R A;  2X3V A;  4M0M A;  1OA0 A;  1HXK A;  3B52 X;  3D52 A;  3O3M B;  1E9V A;  3O3N B;  4R5J A;  2D4C A;  3QA8 A;  4JLC A;  3ABH A;  3HAH A;  4EZY A;  3EJS A;  2V0O A;  3BUD A;  3G9G A;  2RAK A;  3QNI A;  3LMF A;  2Z0O A;  4EZN A;  3DX2 A;  3M3W A;  2FYV A;  2RAI A;  4I1Q A;  2X3W A;  1E2U A;  3D50 A;  3RPM A;  3Q84 A;  3OHX M;  3OK8 A;  3SOG A;  4IWO A;  5C5B B;  1DKY A;  4IW0 A;  1MJG A;  1OA1 A;  2X3X A;  3BVV A;  4AZB A;  4FZS A;  2KHO A;  3CZS A;  3I01 A;  2YI8 A;  3D2F A;  1R33 A;  4EZV A;  3T47 A;  3ER8 C;  1E1D A;  4ATM A;  2GF4 A;  3ACO A;  4IM3 A;  2FIC A;  3BUB A;  4EZS A;  2YIV X;  3EJU A;  3B53 X;  2F7Q A;  4BNE A;  4EZR A;  3HAJ A;  2F1A A;  4JN4 A;  3LVT A;  3QE6 A;  2ZXQ A;  4HYB A;  3D4Z A;  4DYL A;  3D2E A;  1URU A;  4H8S A;  4F01 A;  1TQV A;  3VKH A;  1ZYL A;  3DX1 A;  1X04 A;  2QFF A;  2F7P A;  1I4T A;  4D8J A;  3EJR A;  4EZP A;  3HAI A;  4FZO A;  2GA9 D;  4JNE A;  3EJP A;  2N3K A;  4AZC B;  3D4Y A;  1I4L A;  4JWI A;  4AZ6 A;  2OW7 A;  4AZG A;  5TKY A;  4F00 A;  1O7D B;  1R5E A;  2QXL A;  3ER9 B;  1I49 A;  4IWP A;  1SU7 A;  4AZC A;  2YL9 A;  3KAV A;  2PY6 A;  4WPE A;  4FZP A;  3BUI A;  3I2W A;  1JQK A;  3O3O B;  4G6Q A;  1OAO A;  1UPX A;  1X03 A;  2OBL A;  3T49 A;  1W9M A;  1QX1 A;  3BVW A;  5FIG A;  2ALW A;  1O7D C;  2ND0 A;  3EJT A;  5C5B A;  3DX4 A;  1PS3 A;  2YLL A;  2Z8Y A;  4AZ7 A;  3I04 A;  2Z0V A;  3A98 A;  3BVT A;  4KIK B;  1HTY A;  4R5I A;  1LQ7 A;  1U00 A;  3VEB A;  4EZU A;  4AKV A;  2QKW A;  4UDX X;  3C7N A;  2GAF D;  1TQS A;  2C08 A;  1GNT A;  2WIN M;  2NCZ A;  4IM2 A;  2F18 A;  4E3C A;  2WYH A;  2OZN B;  4HR1 B;  1GN9 A;  2Z0N A;  3BVU A;  3DDG A;  4IM0 A;  2MI7 A;  3CVR A;  4H6H A;  3BLB A;  4NPH A;  2JNS A;  1TQW A;  4JNF A;  1YWM A;  4EZO A;  1I4D A;  1DKX A;  3BVX A;  3CZN A;  4AVM A;  3VEA A;  3GI7 A;  2YIA A;  4JL9 A;  1DKZ A;  2OW6 A;  2ND1 A;  1WDZ A;  1QWU A;  4AZ5 A;  2YL5 A;  3CKD A; 
#chains in the Genus database with same CATH homology
 2RAK A;  3QNI A;  1X04 A;  4BNE A;  4DCN C;  3I2W A;  2Z0V A;  3CAZ A;  3HAJ A;  3PLT A;  5C5B B;  2Q12 A;  2X3X A;  1X03 A;  4NQI A;  1I4T A;  1ZWW A;  3QWE A;  1Y2O A;  2YKT A;  2D4C A;  2Z0O A;  1I4D A;  2D1L A;  2RAJ A;  3M3W A;  1I49 A;  4FZS A;  4NSW A;  4ATM A;  4AVM A;  3ABH A;  3HAH A;  3DYT A;  3ACO A;  3HAI A;  3Q0K A;  2RAI A;  4I1Q A;  2ELB A;  2Q13 A;  2Z0N A;  2EFK A;  2FIC A;  2X3W A;  3G9G A;  3QE6 A;  3LLL A;  2EFL A;  4AKV A;  5C5B A;  4DYL A;  2V0O A;  4WPC A;  1WDZ A;  1URU A;  3Q84 A;  3SYV A;  2X3V A;  4H8S A;  3SOG A;  4WPE A;  2C08 A;  3OK8 A;  1I4L A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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