2C08A

Rat endophilin a1 bar domain
Total Genus 73
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
73
sequence length
204
structure length
204
Chain Sequence
EGTKLDDDFKEMERKVDVTSRAVMEIMTKTIEYLQPNPASRAKPQAEALLAEAMLKFGRELGDDCNFGPALGEVGEAMRELSEVKDSLDMEVKQNFIDPLQNLHDKDLREIQHHLKKLEGRRLDFDYKKKRQGKIPDEELRQALEKFDESKEIAESSMFNLLEMDIEQVSQLSALVQAQLEYHKQAVQILQQVTVRLEERIRQA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords SH3-CONTAINING GRB2-LIKE PROTEIN 2
publication title Mechanism of Endophilin N-Bar Domain-Mediated Membrane Curvature.
pubmed doi rcsb
source organism Rattus norvegicus
total genus 73
structure length 204
sequence length 204
ec nomenclature ec 2.3.1.-:
pdb deposition date 2005-08-26
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1270.60 Mainly Alpha Up-down Bundle Substrate Binding Domain Of Dnak; Chain:A; Domain 2 Arfaptin homology (AH) domain/BAR domain 2c08A00
3PLTA 3SYVA 3G9GA 3M3WA 2X3VA 4ATMA 5C5BB 5C5BA 1X04A 2Z0NA 2EFKA 4WPCA 1Y2OA 4NSWA 3ACOA 1X03A 1ZWWA 2V0OA 2Z0VA 2RAJA 4FZSA 4I1QA 3SOGA 4AVMA 4WPEA 2X3WA 2RAIA 4DCNC 3QE6A 3Q0KA 3QNIA 4DYLA 1URUA 4BNEA 1I4TA 2RAKA 3HAIA 3HAHA 2D1LA 3Q84A 3QWEA 2EFLA 1WDZA 2Q13A 4H8SA 3CAZA 2ELBA 2D4CA 4NQIA 2Z0OA 1I49A 3ABHA 2X3XA 3OK8A 1I4LA 4AKVA 2YKTA 2FICA 2C08A 3DYTA 2Q12A 3I2WA 3LLLA 1I4DA 3HAJA
chains in the Genus database with same CATH superfamily
1O7DB 3D52A 4ATMA 2F7PA 3CVRA 2V0OA 1R33A 3D4ZA 3BVVA 3D4YA 3DDGA 4FM3A 4M0MA 4D8JA 2YIBA 2YI9A 2Z0VA 4AZ5A 3DPQA 1SUFA 1SU6A 4R5GA 4AZ7A 3D50A 1OA0A 2EX3B 4AZHA 3FD9A 3F7WA 2ALWA 4FZOA 2OBLA 1GN9A 2EFKA 3I04A 2JNSA 2RAJA 3CZNA 2ND0A 4DYLA 3OHXM 2Z8YA 2RAKA 1DKXA 1E2UA 2GAFD 3GI7A 4H6HA 2EWFA 2C08A 3HAJA 3T48A 3BVUA 3C7NA 3T47A 1ZWWA 2OZNB 3OWGA 4JWCA 3L3PA 5KBPA 3EJRA 1URUA 3DX0A 1E9VA 1WDZA 4H8SA 5TKYA 2QKWA 4AZIA 3I01A 2F7QA 2FYVA 4EZRA 2YL9A 2FICA 4IWPA 1I4DA 3DPOA 3EJPA 2F1BA 4HR1A 4B9QA 5C5BA 3LVTA 2GF4A 4AVMA 3DPPA 2YL8A 2WYIA 1TQVA 4AZGA 3QNJA 1TQWA 1UPXA 3EJTA 1HWWA 4KIKB 2LM0A 1DKZA 2YIVX 1MJGA 2QXLA 1X04A 2YLLA 4AZCB 3ACOA 3BLBA 3DDFA 1OA1A 2PMRA 2D1LA 2QFFA 2NCZA 3BUBA 1TQSA 3A98A 2LXYA 2YL6A 3VEAA 4JLCA 2WINM 2OBMA 3B52X 1PS3A 4EZQA 1LQ7A 2YL5A 3QWEA 2Q13A 3CZSA 4PO2A 1TQUA 3CAZA 3KDRA 3KAVA 3DX3A 4IWOA 3PLTA 4EZSA 3I39X 4EZOA 4AZ6A 4WPCA 1Y2OA 1HXKA 1QWNA 2X3WA 3BVXA 1DKYA 2F7OA 3RPMA 3B51X 2EFLA 2O0I1 4NQIA 2X5CA 2RT6A 3BUPA 4JNFA 3ERCC 4JWDA 2MI7A 1QX1A 2OW7A 4R5LA 3Q84A 3T4AG 3CKDA 3EJUA 2YKTA 4UDXX 2JNKA 3RV1A 4JNEA 4EZXA 3BUQA 2YI8A 4DCNC 3QE6A 2YIAA 1YWMA 4G6QA 1R34A 4KIKA 3OK8A 1I4LA 1E1DA 2N3KA 3SYVA 2Z0NA 5FIGA 3EJQA 4AZCA 4NSWA 3D51A 3RV0A 2F1AA 4EZPA 3T46A 4FZSA 3BVWA 1SU8A 4JWEA 5FLEX 3D2FA 4EZTA 1I49A 4JL9A 4IWQA 4EZZA 1JQKA 4JN4A 3G9GA 3VKHA 4E81A 2ZXQA 3LMFA 4F00A 1TQTA 1O7DC 3EJSA 4EZUA 3L3OM 2ELBA 4NPHA 1W9MA 3O3OB 2ND1A 4UDYX 4IM2A 1X03A 3B53X 5E84A 4IW0A 4H6IA 2OW6A 1R5EA 4E3CA 4EZNA 4F01A 4EZWA 4IM3A 2OO2A 3I2WA 3M3WA 3DX1A 1SU7A 3SOGA 2YLAA 3O3NB 4WPEA 4JWIA 4BNEA 3DX4A 3ER8C 3HAIA 4HY9A 4AZBA 3BUIA 4FZPA 3ABHA 2X3XA 3VEBA 1GNLA 4EZYA 2Q12A 4IM0A 1GNTA 1QWUA 4R5IA 4R5JA 2X3VA 2PY6A 1HTYA 3BUDA 1OAOA 1ZYLA 2F7RA 3UITA 2KHOA 2RAIA 3Q0KA 3QNIA 1I4TA 2GA9D 2Z0OA 3BVTA 4EZVA 3ZEDA 3LLLA 1U00A 3O3MB 4HR1B 5C5BB 4R5KA 3DX2A 4HYBA 3QA8A 4I1QA 3CV5A 3KAWA 3ER9B 3HAHA 3D2EA 2D4CA 2WYHA 3T49A 4AKVA 3DYTA 2F18A
chains in the Genus database with same CATH topology
3PLTA 3SYVA 3G9GA 3M3WA 2X3VA 4ATMA 5C5BB 5C5BA 1X04A 2Z0NA 2EFKA 4WPCA 1Y2OA 4NSWA 3ACOA 1X03A 1ZWWA 2V0OA 2Z0VA 2RAJA 4FZSA 4I1QA 3SOGA 4AVMA 4WPEA 2X3WA 2RAIA 4DCNC 3QE6A 3Q0KA 3QNIA 4DYLA 1URUA 4BNEA 1I4TA 2RAKA 3HAIA 3HAHA 2D1LA 3Q84A 3QWEA 2EFLA 1WDZA 2Q13A 4H8SA 3CAZA 2ELBA 2D4CA 4NQIA 2Z0OA 1I49A 3ABHA 2X3XA 3OK8A 1I4LA 4AKVA 2YKTA 2FICA 2C08A 3DYTA 2Q12A 3I2WA 3LLLA 1I4DA 3HAJA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3PLT A;  3SYV A;  3G9G A;  3M3W A;  2X3V A;  4ATM A;  5C5B B;  5C5B A;  1X04 A;  2Z0N A;  2EFK A;  4WPC A;  1Y2O A;  4NSW A;  3ACO A;  1X03 A;  1ZWW A;  2V0O A;  2Z0V A;  2RAJ A;  4FZS A;  4I1Q A;  3SOG A;  4AVM A;  4WPE A;  2X3W A;  2RAI A;  4DCN C;  3QE6 A;  3Q0K A;  3QNI A;  4DYL A;  1URU A;  4BNE A;  1I4T A;  2RAK A;  3HAI A;  3HAH A;  2D1L A;  3Q84 A;  3QWE A;  2EFL A;  1WDZ A;  2Q13 A;  4H8S A;  3CAZ A;  2ELB A;  2D4C A;  4NQI A;  2Z0O A;  1I49 A;  3ABH A;  2X3X A;  3OK8 A;  1I4L A;  4AKV A;  2YKT A;  2FIC A;  2C08 A;  3DYT A;  2Q12 A;  3I2W A;  3LLL A;  1I4D A;  3HAJ A; 
#chains in the Genus database with same CATH topology
 1O7D B;  3D52 A;  4ATM A;  2F7P A;  3CVR A;  2V0O A;  1R33 A;  3D4Z A;  3BVV A;  3D4Y A;  3DDG A;  4FM3 A;  4M0M A;  4D8J A;  2YIB A;  2YI9 A;  2Z0V A;  4AZ5 A;  3DPQ A;  1SUF A;  1SU6 A;  4R5G A;  4AZ7 A;  3D50 A;  1OA0 A;  2EX3 B;  4AZH A;  3FD9 A;  3F7W A;  2ALW A;  4FZO A;  2OBL A;  1GN9 A;  2EFK A;  3I04 A;  2JNS A;  2RAJ A;  3CZN A;  2ND0 A;  4DYL A;  3OHX M;  2Z8Y A;  2RAK A;  1DKX A;  1E2U A;  2GAF D;  3GI7 A;  4H6H A;  2EWF A;  2C08 A;  3HAJ A;  3T48 A;  3BVU A;  3C7N A;  3T47 A;  1ZWW A;  2OZN B;  3OWG A;  4JWC A;  3L3P A;  5KBP A;  3EJR A;  1URU A;  3DX0 A;  1E9V A;  1WDZ A;  4H8S A;  5TKY A;  2QKW A;  4AZI A;  3I01 A;  2F7Q A;  2FYV A;  4EZR A;  2YL9 A;  2FIC A;  4IWP A;  1I4D A;  3DPO A;  3EJP A;  2F1B A;  4HR1 A;  4B9Q A;  5C5B A;  3LVT A;  2GF4 A;  4AVM A;  3DPP A;  2YL8 A;  2WYI A;  1TQV A;  4AZG A;  3QNJ A;  1TQW A;  1UPX A;  3EJT A;  1HWW A;  4KIK B;  2LM0 A;  1DKZ A;  2YIV X;  1MJG A;  2QXL A;  1X04 A;  2YLL A;  4AZC B;  3ACO A;  3BLB A;  3DDF A;  1OA1 A;  2PMR A;  2D1L A;  2QFF A;  2NCZ A;  3BUB A;  1TQS A;  3A98 A;  2LXY A;  2YL6 A;  3VEA A;  4JLC A;  2WIN M;  2OBM A;  3B52 X;  1PS3 A;  4EZQ A;  1LQ7 A;  2YL5 A;  3QWE A;  2Q13 A;  3CZS A;  4PO2 A;  1TQU A;  3CAZ A;  3KDR A;  3KAV A;  3DX3 A;  4IWO A;  3PLT A;  4EZS A;  3I39 X;  4EZO A;  4AZ6 A;  4WPC A;  1Y2O A;  1HXK A;  1QWN A;  2X3W A;  3BVX A;  1DKY A;  2F7O A;  3RPM A;  3B51 X;  2EFL A;  2O0I 1;  4NQI A;  2X5C A;  2RT6 A;  3BUP A;  4JNF A;  3ERC C;  4JWD A;  2MI7 A;  1QX1 A;  2OW7 A;  4R5L A;  3Q84 A;  3T4A G;  3CKD A;  3EJU A;  2YKT A;  4UDX X;  2JNK A;  3RV1 A;  4JNE A;  4EZX A;  3BUQ A;  2YI8 A;  4DCN C;  3QE6 A;  2YIA A;  1YWM A;  4G6Q A;  1R34 A;  4KIK A;  3OK8 A;  1I4L A;  1E1D A;  2N3K A;  3SYV A;  2Z0N A;  5FIG A;  3EJQ A;  4AZC A;  4NSW A;  3D51 A;  3RV0 A;  2F1A A;  4EZP A;  3T46 A;  4FZS A;  3BVW A;  1SU8 A;  4JWE A;  5FLE X;  3D2F A;  4EZT A;  1I49 A;  4JL9 A;  4IWQ A;  4EZZ A;  1JQK A;  4JN4 A;  3G9G A;  3VKH A;  4E81 A;  2ZXQ A;  3LMF A;  4F00 A;  1TQT A;  1O7D C;  3EJS A;  4EZU A;  3L3O M;  2ELB A;  4NPH A;  1W9M A;  3O3O B;  2ND1 A;  4UDY X;  4IM2 A;  1X03 A;  3B53 X;  5E84 A;  4IW0 A;  4H6I A;  2OW6 A;  1R5E A;  4E3C A;  4EZN A;  4F01 A;  4EZW A;  4IM3 A;  2OO2 A;  3I2W A;  3M3W A;  3DX1 A;  1SU7 A;  3SOG A;  2YLA A;  3O3N B;  4WPE A;  4JWI A;  4BNE A;  3DX4 A;  3ER8 C;  3HAI A;  4HY9 A;  4AZB A;  3BUI A;  4FZP A;  3ABH A;  2X3X A;  3VEB A;  1GNL A;  4EZY A;  2Q12 A;  4IM0 A;  1GNT A;  1QWU A;  4R5I A;  4R5J A;  2X3V A;  2PY6 A;  1HTY A;  3BUD A;  1OAO A;  1ZYL A;  2F7R A;  3UIT A;  2KHO A;  2RAI A;  3Q0K A;  3QNI A;  1I4T A;  2GA9 D;  2Z0O A;  3BVT A;  4EZV A;  3ZED A;  3LLL A;  1U00 A;  3O3M B;  4HR1 B;  5C5B B;  4R5K A;  3DX2 A;  4HYB A;  3QA8 A;  4I1Q A;  3CV5 A;  3KAW A;  3ER9 B;  3HAH A;  3D2E A;  2D4C A;  2WYH A;  3T49 A;  4AKV A;  3DYT A;  2F18 A; 
#chains in the Genus database with same CATH homology
 3PLT A;  3SYV A;  3G9G A;  3M3W A;  2X3V A;  4ATM A;  5C5B B;  5C5B A;  1X04 A;  2Z0N A;  2EFK A;  4WPC A;  1Y2O A;  4NSW A;  3ACO A;  1X03 A;  1ZWW A;  2V0O A;  2Z0V A;  2RAJ A;  4FZS A;  4I1Q A;  3SOG A;  4AVM A;  4WPE A;  2X3W A;  2RAI A;  4DCN C;  3QE6 A;  3Q0K A;  3QNI A;  4DYL A;  1URU A;  4BNE A;  1I4T A;  2RAK A;  3HAI A;  3HAH A;  2D1L A;  3Q84 A;  3QWE A;  2EFL A;  1WDZ A;  2Q13 A;  4H8S A;  3CAZ A;  2ELB A;  2D4C A;  4NQI A;  2Z0O A;  1I49 A;  3ABH A;  2X3X A;  3OK8 A;  1I4L A;  4AKV A;  2YKT A;  2FIC A;  2C08 A;  3DYT A;  2Q12 A;  3I2W A;  3LLL A;  1I4D A;  3HAJ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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