3SOGA

Crystal structure of the bar domain of human amphiphysin, isoform 1
Total Genus 87
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
87
sequence length
200
structure length
197
Chain Sequence
DEQFEEYVQNFKRQEAEGTRLQRELRGYLAAIKGMQEASMKLTESLHEVYEPDWYGREDVKMVGEKCDVLWEDFHQKLVDGSLLTLDTYLGQFPDIKNRIAKRSRKLVDYDSARHHLEALQSKDESRISKAEEEFQKAQKVFEEFNVDLQEELPSLWSRRVGFYVNTFKNVSSLEAKFHKEIAVLCHKLYEVMTKLG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural protein
source organism Homo sapiens
molecule keywords Amphiphysin
total genus 87
structure length 197
sequence length 200
ec nomenclature
pdb deposition date 2011-06-30
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1270.60 Mainly Alpha Up-down Bundle Substrate Binding Domain Of Dnak; Chain:A; Domain 2 Arfaptin homology (AH) domain/BAR domain 3sogA00
2FICA 3I2WA 3PLTA 3SYVA 2ELBA 1I4TA 4WPCA 1X03A 2X3VA 3HAHA 3DYTA 2X3WA 2EFKA 4AVMA 3Q84A 2Z0OA 1I49A 1I4DA 3LLLA 4DCNC 3QE6A 3ABHA 2EFLA 5C5BB 5C5BA 3ACOA 2Q12A 1Y2OA 1ZWWA 3QWEA 2D1LA 2RAIA 2Q13A 2Z0VA 2YKTA 3Q0KA 1I4LA 2RAKA 1X04A 3OK8A 2D4CA 2RAJA 2V0OA 2C08A 1URUA 2Z0NA 3M3WA 3QNIA 4NSWA 4I1QA 4DYLA 3G9GA 4WPEA 3HAJA 3HAIA 4FZSA 3CAZA 3SOGA 4AKVA 4NQIA 2X3XA 1WDZA 4ATMA 4BNEA 4H8SA
chains in the Genus database with same CATH superfamily
1DKYA 3DYTA 2WYIA 2YL8A 2Q13A 1E2UA 1DKXA 3OHXM 4UDYX 2YIVX 3G9GA 4EZXA 2GA9D 4JNFA 4BNEA 4HR1B 4AZIA 1TQSA 2X3WA 1SUFA 1O7DB 4AZ6A 4EZZA 3VEAA 2Z0VA 1U00A 3LMFA 1OA1A 4KIKB 4DYLA 3BVTA 1MJGA 3D52A 2YIAA 4JWIA 1OAOA 2F7QA 4R5LA 3BVVA 4JLCA 3DX0A 2Z0OA 3Q84A 1OA0A 3ERCC 4FZPA 2RT6A 1DKZA 3EJTA 2JNSA 3EJSA 3VKHA 3T49A 4R5JA 1R33A 4IWQA 4AKVA 4H6HA 3CZNA 2YI9A 2ALWA 4DCNC 4F00A 5C5BB 2EWFA 3BUDA 2RAKA 2RAJA 1URUA 3QA8A 1QX1A 3DX3A 3EJQA 4JL9A 1LQ7A 2PMRA 2WINM 4HR1A 3L3PA 4H6IA 3HAHA 1SU6A 3D2EA 2NCZA 3I04A 3CVRA 1W9MA 2OZNB 2KHOA 4G6QA 4KIKA 4EZUA 3SOGA 1GNTA 1R34A 4ATMA 4H8SA 2ELBA 2YLLA 1TQUA 1GN9A 1PS3A 5E84A 4B9QA 2GAFD 4IWPA 3BVXA 3I39X 3L3OM 1R5EA 3RV1A 2F1AA 5TKYA 4EZYA 3D51A 4EZRA 3DPQA 3D50A 3HAIA 1I4TA 1TQTA 1TQWA 3T4AG 2YL9A 4E3CA 2FYVA 4AZ7A 5C5BA 4EZQA 2QFFA 2OW7A 4FM3A 4AZBA 1JQKA 1ZYLA 2OBLA 2F7OA 2GF4A 4D8JA 3B52X 4HYBA 3T46A 1I4LA 2C08A 4NSWA 5FIGA 5FLEX 4PO2A 2YIBA 3D4ZA 3DX4A 2YI8A 2X3VA 3EJPA 2WYHA 1I4DA 1SU7A 3FD9A 2OBMA 4JWDA 4NPHA 3ACOA 3DX2A 4IM3A 2N3KA 1GNLA 1X04A 1E9VA 3ER8C 3UITA 1YWMA 3BUQA 3ER9B 1WDZA 4EZOA 4AZGA 2YL6A 1O7DC 3BVWA 2O0I1 4JNEA 1HTYA 3DDGA 1Y2OA 1ZWWA 2F7PA 4UDXX 2RAIA 1HWWA 3DPPA 2ZXQA 3B53X 4FZSA 3T47A 2F18A 4NQIA 4AZ5A 2X3XA 2YLAA 4IW0A 3C7NA 3F7WA 2OW6A 4IM0A 2F7RA 4EZTA 2V0OA 3KAWA 3ZEDA 2QKWA 4AZCB 3CZSA 3OWGA 4HY9A 1I49A 3LLLA 3RPMA 4JWCA 2Z8YA 3OK8A 3CV5A 2LM0A 3BLBA 1HXKA 3EJUA 4M0MA 2EX3B 1QWUA 3BUBA 3RV0A 4FZOA 2FICA 3I2WA 2LXYA 4EZWA 2EFKA 4AZHA 3KAVA 3ABHA 2YL5A 4R5KA 4F01A 2D4CA 4JN4A 2ND1A 3CAZA 3D2FA 3LVTA 4I1QA 4EZPA 3O3MB 3DDFA 4EZNA 3GI7A 3EJRA 3BUIA 2Q12A 4EZVA 3VEBA 2YKTA 2JNKA 4JWEA 2QXLA 2Z0NA 3QNJA 3DPOA 3KDRA 5KBPA 3HAJA 2MI7A 3BVUA 2PY6A 3SYVA 3PLTA 2F1BA 4WPCA 1X03A 4AZCA 4AVMA 4IM2A 3DX1A 2ND0A 1SU8A 3QE6A 3QWEA 3A98A 3Q0KA 3CKDA 3B51X 3O3OB 3QNIA 3I01A 4WPEA 3T48A 4R5IA 3BUPA 1TQVA 4EZSA 1UPXA 3O3NB 2EFLA 2OO2A 3D4YA 2D1LA 1E1DA 1QWNA 4E81A 3M3WA 2X5CA 4IWOA 4R5GA
chains in the Genus database with same CATH topology
2FICA 3I2WA 3PLTA 3SYVA 2ELBA 1I4TA 4WPCA 1X03A 2X3VA 3HAHA 3DYTA 2X3WA 2EFKA 4AVMA 3Q84A 2Z0OA 1I49A 1I4DA 3LLLA 4DCNC 3QE6A 3ABHA 2EFLA 5C5BB 5C5BA 3ACOA 2Q12A 1Y2OA 1ZWWA 3QWEA 2D1LA 2RAIA 2Q13A 2Z0VA 2YKTA 3Q0KA 1I4LA 2RAKA 1X04A 3OK8A 2D4CA 2RAJA 2V0OA 2C08A 1URUA 2Z0NA 3M3WA 3QNIA 4NSWA 4I1QA 4DYLA 3G9GA 4WPEA 3HAJA 3HAIA 4FZSA 3CAZA 3SOGA 4AKVA 4NQIA 2X3XA 1WDZA 4ATMA 4BNEA 4H8SA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2FIC A;  3I2W A;  3PLT A;  3SYV A;  2ELB A;  1I4T A;  4WPC A;  1X03 A;  2X3V A;  3HAH A;  3DYT A;  2X3W A;  2EFK A;  4AVM A;  3Q84 A;  2Z0O A;  1I49 A;  1I4D A;  3LLL A;  4DCN C;  3QE6 A;  3ABH A;  2EFL A;  5C5B B;  5C5B A;  3ACO A;  2Q12 A;  1Y2O A;  1ZWW A;  3QWE A;  2D1L A;  2RAI A;  2Q13 A;  2Z0V A;  2YKT A;  3Q0K A;  1I4L A;  2RAK A;  1X04 A;  3OK8 A;  2D4C A;  2RAJ A;  2V0O A;  2C08 A;  1URU A;  2Z0N A;  3M3W A;  3QNI A;  4NSW A;  4I1Q A;  4DYL A;  3G9G A;  4WPE A;  3HAJ A;  3HAI A;  4FZS A;  3CAZ A;  3SOG A;  4AKV A;  4NQI A;  2X3X A;  1WDZ A;  4ATM A;  4BNE A;  4H8S A; 
#chains in the Genus database with same CATH topology
 1DKY A;  3DYT A;  2WYI A;  2YL8 A;  2Q13 A;  1E2U A;  1DKX A;  3OHX M;  4UDY X;  2YIV X;  3G9G A;  4EZX A;  2GA9 D;  4JNF A;  4BNE A;  4HR1 B;  4AZI A;  1TQS A;  2X3W A;  1SUF A;  1O7D B;  4AZ6 A;  4EZZ A;  3VEA A;  2Z0V A;  1U00 A;  3LMF A;  1OA1 A;  4KIK B;  4DYL A;  3BVT A;  1MJG A;  3D52 A;  2YIA A;  4JWI A;  1OAO A;  2F7Q A;  4R5L A;  3BVV A;  4JLC A;  3DX0 A;  2Z0O A;  3Q84 A;  1OA0 A;  3ERC C;  4FZP A;  2RT6 A;  1DKZ A;  3EJT A;  2JNS A;  3EJS A;  3VKH A;  3T49 A;  4R5J A;  1R33 A;  4IWQ A;  4AKV A;  4H6H A;  3CZN A;  2YI9 A;  2ALW A;  4DCN C;  4F00 A;  5C5B B;  2EWF A;  3BUD A;  2RAK A;  2RAJ A;  1URU A;  3QA8 A;  1QX1 A;  3DX3 A;  3EJQ A;  4JL9 A;  1LQ7 A;  2PMR A;  2WIN M;  4HR1 A;  3L3P A;  4H6I A;  3HAH A;  1SU6 A;  3D2E A;  2NCZ A;  3I04 A;  3CVR A;  1W9M A;  2OZN B;  2KHO A;  4G6Q A;  4KIK A;  4EZU A;  3SOG A;  1GNT A;  1R34 A;  4ATM A;  4H8S A;  2ELB A;  2YLL A;  1TQU A;  1GN9 A;  1PS3 A;  5E84 A;  4B9Q A;  2GAF D;  4IWP A;  3BVX A;  3I39 X;  3L3O M;  1R5E A;  3RV1 A;  2F1A A;  5TKY A;  4EZY A;  3D51 A;  4EZR A;  3DPQ A;  3D50 A;  3HAI A;  1I4T A;  1TQT A;  1TQW A;  3T4A G;  2YL9 A;  4E3C A;  2FYV A;  4AZ7 A;  5C5B A;  4EZQ A;  2QFF A;  2OW7 A;  4FM3 A;  4AZB A;  1JQK A;  1ZYL A;  2OBL A;  2F7O A;  2GF4 A;  4D8J A;  3B52 X;  4HYB A;  3T46 A;  1I4L A;  2C08 A;  4NSW A;  5FIG A;  5FLE X;  4PO2 A;  2YIB A;  3D4Z A;  3DX4 A;  2YI8 A;  2X3V A;  3EJP A;  2WYH A;  1I4D A;  1SU7 A;  3FD9 A;  2OBM A;  4JWD A;  4NPH A;  3ACO A;  3DX2 A;  4IM3 A;  2N3K A;  1GNL A;  1X04 A;  1E9V A;  3ER8 C;  3UIT A;  1YWM A;  3BUQ A;  3ER9 B;  1WDZ A;  4EZO A;  4AZG A;  2YL6 A;  1O7D C;  3BVW A;  2O0I 1;  4JNE A;  1HTY A;  3DDG A;  1Y2O A;  1ZWW A;  2F7P A;  4UDX X;  2RAI A;  1HWW A;  3DPP A;  2ZXQ A;  3B53 X;  4FZS A;  3T47 A;  2F18 A;  4NQI A;  4AZ5 A;  2X3X A;  2YLA A;  4IW0 A;  3C7N A;  3F7W A;  2OW6 A;  4IM0 A;  2F7R A;  4EZT A;  2V0O A;  3KAW A;  3ZED A;  2QKW A;  4AZC B;  3CZS A;  3OWG A;  4HY9 A;  1I49 A;  3LLL A;  3RPM A;  4JWC A;  2Z8Y A;  3OK8 A;  3CV5 A;  2LM0 A;  3BLB A;  1HXK A;  3EJU A;  4M0M A;  2EX3 B;  1QWU A;  3BUB A;  3RV0 A;  4FZO A;  2FIC A;  3I2W A;  2LXY A;  4EZW A;  2EFK A;  4AZH A;  3KAV A;  3ABH A;  2YL5 A;  4R5K A;  4F01 A;  2D4C A;  4JN4 A;  2ND1 A;  3CAZ A;  3D2F A;  3LVT A;  4I1Q A;  4EZP A;  3O3M B;  3DDF A;  4EZN A;  3GI7 A;  3EJR A;  3BUI A;  2Q12 A;  4EZV A;  3VEB A;  2YKT A;  2JNK A;  4JWE A;  2QXL A;  2Z0N A;  3QNJ A;  3DPO A;  3KDR A;  5KBP A;  3HAJ A;  2MI7 A;  3BVU A;  2PY6 A;  3SYV A;  3PLT A;  2F1B A;  4WPC A;  1X03 A;  4AZC A;  4AVM A;  4IM2 A;  3DX1 A;  2ND0 A;  1SU8 A;  3QE6 A;  3QWE A;  3A98 A;  3Q0K A;  3CKD A;  3B51 X;  3O3O B;  3QNI A;  3I01 A;  4WPE A;  3T48 A;  4R5I A;  3BUP A;  1TQV A;  4EZS A;  1UPX A;  3O3N B;  2EFL A;  2OO2 A;  3D4Y A;  2D1L A;  1E1D A;  1QWN A;  4E81 A;  3M3W A;  2X5C A;  4IWO A;  4R5G A; 
#chains in the Genus database with same CATH homology
 2FIC A;  3I2W A;  3PLT A;  3SYV A;  2ELB A;  1I4T A;  4WPC A;  1X03 A;  2X3V A;  3HAH A;  3DYT A;  2X3W A;  2EFK A;  4AVM A;  3Q84 A;  2Z0O A;  1I49 A;  1I4D A;  3LLL A;  4DCN C;  3QE6 A;  3ABH A;  2EFL A;  5C5B B;  5C5B A;  3ACO A;  2Q12 A;  1Y2O A;  1ZWW A;  3QWE A;  2D1L A;  2RAI A;  2Q13 A;  2Z0V A;  2YKT A;  3Q0K A;  1I4L A;  2RAK A;  1X04 A;  3OK8 A;  2D4C A;  2RAJ A;  2V0O A;  2C08 A;  1URU A;  2Z0N A;  3M3W A;  3QNI A;  4NSW A;  4I1Q A;  4DYL A;  3G9G A;  4WPE A;  3HAJ A;  3HAI A;  4FZS A;  3CAZ A;  3SOG A;  4AKV A;  4NQI A;  2X3X A;  1WDZ A;  4ATM A;  4BNE A;  4H8S A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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