3SOGA

Crystal structure of the bar domain of human amphiphysin, isoform 1
Total Genus 87
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
87
sequence length
200
structure length
197
Chain Sequence
DEQFEEYVQNFKRQEAEGTRLQRELRGYLAAIKGMQEASMKLTESLHEVYEPDWYGREDVKMVGEKCDVLWEDFHQKLVDGSLLTLDTYLGQFPDIKNRIAKRSRKLVDYDSARHHLEALQSKDESRISKAEEEFQKAQKVFEEFNVDLQEELPSLWSRRVGFYVNTFKNVSSLEAKFHKEIAVLCHKLYEVMTKLG
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Structural protein
molecule keywords Amphiphysin
source organism Homo sapiens
total genus 87
structure length 197
sequence length 200
ec nomenclature
pdb deposition date 2011-06-30
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1270.60 Mainly Alpha Up-down Bundle Substrate Binding Domain Of Dnak; Chain:A; Domain 2 Arfaptin homology (AH) domain/BAR domain 3sogA00
1URUA 4DCNC 3LLLA 4ATMA 4WPEA 2RAIA 3OK8A 4FZSA 3HAIA 2X3WA 3HAHA 2Q12A 2D1LA 5C5BA 4BNEA 1X03A 2Z0NA 2X3VA 3HAJA 4I1QA 4WPCA 4AKVA 2V0OA 2YKTA 1I4DA 3G9GA 3PLTA 3Q84A 3QE6A 2EFKA 2C08A 2EFLA 2RAJA 2FICA 3CAZA 5C5BB 1Y2OA 3M3WA 3SYVA 4AVMA 1I49A 1WDZA 1X04A 1I4LA 3I2WA 2Z0VA 3Q0KA 3QWEA 4NSWA 3ABHA 2X3XA 1ZWWA 3DYTA 2D4CA 4H8SA 2ELBA 4DYLA 3ACOA 1I4TA 2Q13A 3SOGA 2Z0OA 3QNIA 2RAKA 4NQIA
chains in the Genus database with same CATH superfamily
5KBPA 2OZNB 5C5BA 1YWMA 3OWGA 2NCZA 1OA0A 4IM0A 2OBMA 4KIKB 2EWFA 2WYIA 3T49A 3QA8A 3OHXM 4EZYA 4R5LA 5FLEX 1HXKA 3CZSA 4JWDA 1OAOA 3HAJA 1QWNA 4WPCA 2YI8A 3CKDA 2Z8YA 2YKTA 1SUFA 3D52A 3EJQA 4PO2A 3D51A 3CVRA 4F00A 4NPHA 2X3XA 2YLLA 1UPXA 2WINM 2RAKA 2GA9D 3DX4A 4DCNC 4AZCA 3O3MB 2YIBA 3FD9A 4UDYX 1O7DC 2O0I1 3BUBA 2C08A 2F18A 1TQUA 1GN9A 1TQVA 4R5KA 2Q13A 3D2FA 3QNIA 4NQIA 3T46A 4FZOA 4R5IA 4IW0A 3BUIA 3DX2A 3UITA 4ATMA 4EZXA 2YL9A 3O3OB 4JWCA 2D1LA 2X3VA 3VKHA 2OBLA 4AZCB 2RAJA 1R34A 2YL6A 3RV1A 4AVMA 3I2WA 3BUPA 4NSWA 1ZWWA 2MI7A 1QWUA 2LM0A 2JNKA 3QNJA 4H6HA 3Q84A 2EFLA 4HY9A 1X04A 1PS3A 3O3NB 3DPPA 2F7OA 4B9QA 4M0MA 4JL9A 1LQ7A 2GF4A 1R5EA 4JWEA 3D50A 3CAZA 3BUDA 1R33A 4R5GA 1E9VA 2F7QA 3KAWA 3I04A 1DKXA 1HWWA 3T47A 2KHOA 3RV0A 4EZTA 4EZNA 3B51X 4AKVA 4AZIA 4E81A 2YI9A 3CZNA 3BVXA 3D2EA 2JNSA 2F7RA 4AZBA 1E1DA 2WYHA 5TKYA 2Q12A 2FYVA 3L3OM 3D4YA 4UDXX 1I4DA 1SU7A 3DX3A 1TQTA 1Y2OA 3M3WA 3SYVA 1I4LA 1I4TA 3DDGA 4EZZA 3B52X 3DX1A 4WPEA 4AZ7A 4EZPA 3ZEDA 2PY6A 4JLCA 4AZGA 2FICA 2PMRA 2YLAA 2ELBA 3BUQA 4IM3A 1W9MA 1URUA 3I39X 2ND1A 3LMFA 3DX0A 3KAVA 1MJGA 2LXYA 3ERCC 4F01A 3DPQA 3EJSA 3PLTA 4R5JA 3QE6A 2EFKA 4EZQA 3VEAA 1ZYLA 2OW7A 3ACOA 3ER9B 2YL5A 3SOGA 3EJUA 3LLLA 2OO2A 3ER8C 4HR1A 4E3CA 2X3WA 2RT6A 3CV5A 3LVTA 4IWPA 4D8JA 2V0OA 3RPMA 1WDZA 3BVUA 4EZRA 3ABHA 2N3KA 2OW6A 3T4AG 3DDFA 4AZ5A 4JNEA 3DPOA 4G6QA 3F7WA 1HTYA 2ALWA 3BVVA 2ZXQA 1GNTA 4FZPA 1X03A 3EJRA 1DKZA 4HR1B 1SU6A 3GI7A 2F1BA 4H6IA 3QWEA 4FM3A 3L3PA 2QFFA 4JN4A 1E2UA 3KDRA 4JWIA 2YL8A 1TQSA 2QKWA 2F7PA 4FZSA 3HAHA 5E84A 5C5BB 2QXLA 1JQKA 3BVWA 2F1AA 4HYBA 3EJPA 3HAIA 4I1QA 4AZHA 3G9GA 1QX1A 2ND0A 1TQWA 3A98A 3B53X 4IWQA 4IM2A 3VEBA 4EZUA 1GNLA 5FIGA 4BNEA 4EZOA 3T48A 2EX3B 3BVTA 4AZ6A 2X5CA 1I49A 2Z0VA 2GAFD 2D4CA 4DYLA 4EZVA 1OA1A 2YIVX 3I01A 2RAIA 3OK8A 3BLBA 2Z0NA 3D4ZA 1SU8A 4EZSA 1DKYA 4KIKA 4EZWA 4IWOA 3Q0KA 3EJTA 3DYTA 4H8SA 4JNFA 1O7DB 3C7NA 2Z0OA 2YIAA 1U00A
chains in the Genus database with same CATH topology
1URUA 4DCNC 3LLLA 4ATMA 4WPEA 2RAIA 3OK8A 4FZSA 3HAIA 2X3WA 3HAHA 2Q12A 2D1LA 5C5BA 4BNEA 1X03A 2Z0NA 2X3VA 3HAJA 4I1QA 4WPCA 4AKVA 2V0OA 2YKTA 1I4DA 3G9GA 3PLTA 3Q84A 3QE6A 2EFKA 2C08A 2EFLA 2RAJA 2FICA 3CAZA 5C5BB 1Y2OA 3M3WA 3SYVA 4AVMA 1I49A 1WDZA 1X04A 1I4LA 3I2WA 2Z0VA 3Q0KA 3QWEA 4NSWA 3ABHA 2X3XA 1ZWWA 3DYTA 2D4CA 4H8SA 2ELBA 4DYLA 3ACOA 1I4TA 2Q13A 3SOGA 2Z0OA 3QNIA 2RAKA 4NQIA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1URU A;  4DCN C;  3LLL A;  4ATM A;  4WPE A;  2RAI A;  3OK8 A;  4FZS A;  3HAI A;  2X3W A;  3HAH A;  2Q12 A;  2D1L A;  5C5B A;  4BNE A;  1X03 A;  2Z0N A;  2X3V A;  3HAJ A;  4I1Q A;  4WPC A;  4AKV A;  2V0O A;  2YKT A;  1I4D A;  3G9G A;  3PLT A;  3Q84 A;  3QE6 A;  2EFK A;  2C08 A;  2EFL A;  2RAJ A;  2FIC A;  3CAZ A;  5C5B B;  1Y2O A;  3M3W A;  3SYV A;  4AVM A;  1I49 A;  1WDZ A;  1X04 A;  1I4L A;  3I2W A;  2Z0V A;  3Q0K A;  3QWE A;  4NSW A;  3ABH A;  2X3X A;  1ZWW A;  3DYT A;  2D4C A;  4H8S A;  2ELB A;  4DYL A;  3ACO A;  1I4T A;  2Q13 A;  3SOG A;  2Z0O A;  3QNI A;  2RAK A;  4NQI A; 
#chains in the Genus database with same CATH topology
 5KBP A;  2OZN B;  5C5B A;  1YWM A;  3OWG A;  2NCZ A;  1OA0 A;  4IM0 A;  2OBM A;  4KIK B;  2EWF A;  2WYI A;  3T49 A;  3QA8 A;  3OHX M;  4EZY A;  4R5L A;  5FLE X;  1HXK A;  3CZS A;  4JWD A;  1OAO A;  3HAJ A;  1QWN A;  4WPC A;  2YI8 A;  3CKD A;  2Z8Y A;  2YKT A;  1SUF A;  3D52 A;  3EJQ A;  4PO2 A;  3D51 A;  3CVR A;  4F00 A;  4NPH A;  2X3X A;  2YLL A;  1UPX A;  2WIN M;  2RAK A;  2GA9 D;  3DX4 A;  4DCN C;  4AZC A;  3O3M B;  2YIB A;  3FD9 A;  4UDY X;  1O7D C;  2O0I 1;  3BUB A;  2C08 A;  2F18 A;  1TQU A;  1GN9 A;  1TQV A;  4R5K A;  2Q13 A;  3D2F A;  3QNI A;  4NQI A;  3T46 A;  4FZO A;  4R5I A;  4IW0 A;  3BUI A;  3DX2 A;  3UIT A;  4ATM A;  4EZX A;  2YL9 A;  3O3O B;  4JWC A;  2D1L A;  2X3V A;  3VKH A;  2OBL A;  4AZC B;  2RAJ A;  1R34 A;  2YL6 A;  3RV1 A;  4AVM A;  3I2W A;  3BUP A;  4NSW A;  1ZWW A;  2MI7 A;  1QWU A;  2LM0 A;  2JNK A;  3QNJ A;  4H6H A;  3Q84 A;  2EFL A;  4HY9 A;  1X04 A;  1PS3 A;  3O3N B;  3DPP A;  2F7O A;  4B9Q A;  4M0M A;  4JL9 A;  1LQ7 A;  2GF4 A;  1R5E A;  4JWE A;  3D50 A;  3CAZ A;  3BUD A;  1R33 A;  4R5G A;  1E9V A;  2F7Q A;  3KAW A;  3I04 A;  1DKX A;  1HWW A;  3T47 A;  2KHO A;  3RV0 A;  4EZT A;  4EZN A;  3B51 X;  4AKV A;  4AZI A;  4E81 A;  2YI9 A;  3CZN A;  3BVX A;  3D2E A;  2JNS A;  2F7R A;  4AZB A;  1E1D A;  2WYH A;  5TKY A;  2Q12 A;  2FYV A;  3L3O M;  3D4Y A;  4UDX X;  1I4D A;  1SU7 A;  3DX3 A;  1TQT A;  1Y2O A;  3M3W A;  3SYV A;  1I4L A;  1I4T A;  3DDG A;  4EZZ A;  3B52 X;  3DX1 A;  4WPE A;  4AZ7 A;  4EZP A;  3ZED A;  2PY6 A;  4JLC A;  4AZG A;  2FIC A;  2PMR A;  2YLA A;  2ELB A;  3BUQ A;  4IM3 A;  1W9M A;  1URU A;  3I39 X;  2ND1 A;  3LMF A;  3DX0 A;  3KAV A;  1MJG A;  2LXY A;  3ERC C;  4F01 A;  3DPQ A;  3EJS A;  3PLT A;  4R5J A;  3QE6 A;  2EFK A;  4EZQ A;  3VEA A;  1ZYL A;  2OW7 A;  3ACO A;  3ER9 B;  2YL5 A;  3SOG A;  3EJU A;  3LLL A;  2OO2 A;  3ER8 C;  4HR1 A;  4E3C A;  2X3W A;  2RT6 A;  3CV5 A;  3LVT A;  4IWP A;  4D8J A;  2V0O A;  3RPM A;  1WDZ A;  3BVU A;  4EZR A;  3ABH A;  2N3K A;  2OW6 A;  3T4A G;  3DDF A;  4AZ5 A;  4JNE A;  3DPO A;  4G6Q A;  3F7W A;  1HTY A;  2ALW A;  3BVV A;  2ZXQ A;  1GNT A;  4FZP A;  1X03 A;  3EJR A;  1DKZ A;  4HR1 B;  1SU6 A;  3GI7 A;  2F1B A;  4H6I A;  3QWE A;  4FM3 A;  3L3P A;  2QFF A;  4JN4 A;  1E2U A;  3KDR A;  4JWI A;  2YL8 A;  1TQS A;  2QKW A;  2F7P A;  4FZS A;  3HAH A;  5E84 A;  5C5B B;  2QXL A;  1JQK A;  3BVW A;  2F1A A;  4HYB A;  3EJP A;  3HAI A;  4I1Q A;  4AZH A;  3G9G A;  1QX1 A;  2ND0 A;  1TQW A;  3A98 A;  3B53 X;  4IWQ A;  4IM2 A;  3VEB A;  4EZU A;  1GNL A;  5FIG A;  4BNE A;  4EZO A;  3T48 A;  2EX3 B;  3BVT A;  4AZ6 A;  2X5C A;  1I49 A;  2Z0V A;  2GAF D;  2D4C A;  4DYL A;  4EZV A;  1OA1 A;  2YIV X;  3I01 A;  2RAI A;  3OK8 A;  3BLB A;  2Z0N A;  3D4Z A;  1SU8 A;  4EZS A;  1DKY A;  4KIK A;  4EZW A;  4IWO A;  3Q0K A;  3EJT A;  3DYT A;  4H8S A;  4JNF A;  1O7D B;  3C7N A;  2Z0O A;  2YIA A;  1U00 A; 
#chains in the Genus database with same CATH homology
 1URU A;  4DCN C;  3LLL A;  4ATM A;  4WPE A;  2RAI A;  3OK8 A;  4FZS A;  3HAI A;  2X3W A;  3HAH A;  2Q12 A;  2D1L A;  5C5B A;  4BNE A;  1X03 A;  2Z0N A;  2X3V A;  3HAJ A;  4I1Q A;  4WPC A;  4AKV A;  2V0O A;  2YKT A;  1I4D A;  3G9G A;  3PLT A;  3Q84 A;  3QE6 A;  2EFK A;  2C08 A;  2EFL A;  2RAJ A;  2FIC A;  3CAZ A;  5C5B B;  1Y2O A;  3M3W A;  3SYV A;  4AVM A;  1I49 A;  1WDZ A;  1X04 A;  1I4L A;  3I2W A;  2Z0V A;  3Q0K A;  3QWE A;  4NSW A;  3ABH A;  2X3X A;  1ZWW A;  3DYT A;  2D4C A;  4H8S A;  2ELB A;  4DYL A;  3ACO A;  1I4T A;  2Q13 A;  3SOG A;  2Z0O A;  3QNI A;  2RAK A;  4NQI A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...