1LQ7A

De novo designed protein model of radical enzymes
Total Genus 18

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
18
sequence length
67
structure length
67
Chain Sequence
GSRVKALEEKVKALEEKVKALGGGGRIEELKKKWEELKKKIEELGGGGEVKKVEEEVKKLEEEIKKL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (4-20)O1 (2-4)EMPTYAH2 (27-43)AH3 (50-66)TIV2 (44-47)Updating...
connected with : NaN
molecule tags De novo protein
publication title Structure of a De Novo Designed Protein Model of Radical Enzymes
pubmed doi rcsb
molecule keywords Alpha3W
total genus 18
structure length 67
sequence length 67
ec nomenclature
pdb deposition date 2002-05-09
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1270.70 Mainly Alpha Up-down Bundle Substrate Binding Domain Of Dnak; Chain:A; Domain 2 Designed single chain three-helix bundle 1lq7A00
2LXYA 1LQ7A 2MI7A 2ZXQA
chains in the Genus database with same CATH superfamily
2YI9A 4AZHA 1URUA 4F00A 2F1AA 2YIBA 2PMRA 3DDFA 3ER8C 3DX0A 5FIGA 4R5KA 2ND1A 3BLBA 4AZGA 3BVXA 1OAOA 4E3CA 3D2EA 3QNIA 4NSWA 4EZXA 2WYIA 2RAIA 1DKYA 3DPQA 3EJRA 1PS3A 1ZWWA 2X3VA 4IW0A 1QWNA 2Q12A 3CAZA 3D4ZA 4UDXX 2F18A 3EJUA 3HAJA 4JNEA 3FD9A 4NPHA 2Z8YA 3SOGA 2OBMA 3OWGA 2QKWA 1DKZA 2V0OA 2EFLA 4JWDA 5E84A 4WPEA 2YL8A 2YIAA 4AKVA 3I39X 3QE6A 3DDGA 5C5BA 4HR1A 4EZOA 3KDRA 3I01A 3HAHA 4HYBA 4KIKB 3BUBA 1TQWA 3BUDA 4ATMA 1DKXA 1TQUA 4DCNC 4R5LA 2YL5A 4AZ7A 2OW6A 2YIVX 2OW7A 2WINM 4EZWA 2KHOA 3VKHA 4EZYA 2Z0VA 2WYHA 3T47A 1TQSA 4KIKA 3O3MB 3BVTA 1SUFA 2GAFD 5FLEX 1HXKA 1X03A 2PY6A 3EJSA 3KAWA 1LQ7A 1I4TA 3L3OM 3CZSA 3C7NA 4M0MA 2Z0NA 4AZCB 2GA9D 1QWUA 4I1QA 2RAJA 3EJPA 4JWCA 3CZNA 4G6QA 3LLLA 4FM3A 2FICA 1R33A 1UPXA 3DX4A 4EZVA 3LMFA 4IM0A 4IM3A 4AZIA 3EJQA 3ERCC 4H8SA 1OA0A 1TQTA 2EX3B 4NQIA 4AZ6A 1R5EA 1Y2OA 2JNSA 4R5JA 4R5IA 3BUIA 1X04A 4AZCA 4AVMA 3QA8A 3I2WA 4JL9A 1I4DA 3I04A 4JWEA 4WPCA 3O3NB 4EZSA 1SU8A 4DYLA 4IWQA 4EZNA 3T49A 4FZPA 3OK8A 2QXLA 4AZBA 2RT6A 4IWPA 2F7PA 3EJTA 2QFFA 2FYVA 2LXYA 2OZNB 2Z0OA 2MI7A 4FZSA 5KBPA 4F01A 3Q84A 3ACOA 3SYVA 3B51X 3LVTA 1W9MA 3D4YA 4D8JA 4EZUA 2EWFA 1MJGA 4B9QA 1WDZA 1HTYA 2D1LA 4E81A 3Q0KA 1JQKA 2ALWA 1SU7A 2F7OA 3A98A 3F7WA 2GF4A 3RPMA 4EZZA 1QX1A 1O7DB 3DX2A 1SU6A 3QNJA 2LM0A 3ZEDA 3BUPA 3M3WA 2NCZA 3D50A 4JN4A 2RAKA 4EZPA 2F7RA 4EZTA 3DPPA 4R5GA 3ABHA 4EZQA 3B53X 3G9GA 1E9VA 3B52X 5C5BB 4HR1B 2X3WA 2ND0A 4IM2A 4H6IA 3PLTA 4JLCA 3GI7A 2YLAA 1ZYLA 3BUQA 1GN9A 4H6HA 3D52A 2ELBA 3BVWA 1E1DA 3OHXM 3BVVA 1TQVA 1GNLA 2YLLA 1YWMA 4UDYX 4JNFA 4JWIA 3T4AG 3T48A 1R34A 2X3XA 2Q13A 3KAVA 3DX3A 4FZOA 3QWEA 1I49A 2O0I1 2YL9A 4PO2A 4HY9A 3DYTA 3HAIA 1O7DC 2OBLA 3CVRA 3VEBA 3VEAA 2F1BA 1I4LA 3UITA 3D51A 2JNKA 1GNTA 2F7QA 2D4CA 4AZ5A 2YKTA 2YL6A 4IWOA 1U00A 3RV1A 2C08A 2EFKA 2ZXQA 5TKYA 1OA1A 3L3PA 1HWWA 2OO2A 3O3OB 3BVUA 3CV5A 2N3KA 3D2FA 4EZRA 3RV0A 3DX1A 3CKDA 3ER9B 1E2UA 4BNEA 3T46A 2YI8A 3DPOA 2X5CA
chains in the Genus database with same CATH topology
2LXYA 1LQ7A 2MI7A 2ZXQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2LXY A;  1LQ7 A;  2MI7 A;  2ZXQ A; 
#chains in the Genus database with same CATH topology
 2YI9 A;  4AZH A;  1URU A;  4F00 A;  2F1A A;  2YIB A;  2PMR A;  3DDF A;  3ER8 C;  3DX0 A;  5FIG A;  4R5K A;  2ND1 A;  3BLB A;  4AZG A;  3BVX A;  1OAO A;  4E3C A;  3D2E A;  3QNI A;  4NSW A;  4EZX A;  2WYI A;  2RAI A;  1DKY A;  3DPQ A;  3EJR A;  1PS3 A;  1ZWW A;  2X3V A;  4IW0 A;  1QWN A;  2Q12 A;  3CAZ A;  3D4Z A;  4UDX X;  2F18 A;  3EJU A;  3HAJ A;  4JNE A;  3FD9 A;  4NPH A;  2Z8Y A;  3SOG A;  2OBM A;  3OWG A;  2QKW A;  1DKZ A;  2V0O A;  2EFL A;  4JWD A;  5E84 A;  4WPE A;  2YL8 A;  2YIA A;  4AKV A;  3I39 X;  3QE6 A;  3DDG A;  5C5B A;  4HR1 A;  4EZO A;  3KDR A;  3I01 A;  3HAH A;  4HYB A;  4KIK B;  3BUB A;  1TQW A;  3BUD A;  4ATM A;  1DKX A;  1TQU A;  4DCN C;  4R5L A;  2YL5 A;  4AZ7 A;  2OW6 A;  2YIV X;  2OW7 A;  2WIN M;  4EZW A;  2KHO A;  3VKH A;  4EZY A;  2Z0V A;  2WYH A;  3T47 A;  1TQS A;  4KIK A;  3O3M B;  3BVT A;  1SUF A;  2GAF D;  5FLE X;  1HXK A;  1X03 A;  2PY6 A;  3EJS A;  3KAW A;  1LQ7 A;  1I4T A;  3L3O M;  3CZS A;  3C7N A;  4M0M A;  2Z0N A;  4AZC B;  2GA9 D;  1QWU A;  4I1Q A;  2RAJ A;  3EJP A;  4JWC A;  3CZN A;  4G6Q A;  3LLL A;  4FM3 A;  2FIC A;  1R33 A;  1UPX A;  3DX4 A;  4EZV A;  3LMF A;  4IM0 A;  4IM3 A;  4AZI A;  3EJQ A;  3ERC C;  4H8S A;  1OA0 A;  1TQT A;  2EX3 B;  4NQI A;  4AZ6 A;  1R5E A;  1Y2O A;  2JNS A;  4R5J A;  4R5I A;  3BUI A;  1X04 A;  4AZC A;  4AVM A;  3QA8 A;  3I2W A;  4JL9 A;  1I4D A;  3I04 A;  4JWE A;  4WPC A;  3O3N B;  4EZS A;  1SU8 A;  4DYL A;  4IWQ A;  4EZN A;  3T49 A;  4FZP A;  3OK8 A;  2QXL A;  4AZB A;  2RT6 A;  4IWP A;  2F7P A;  3EJT A;  2QFF A;  2FYV A;  2LXY A;  2OZN B;  2Z0O A;  2MI7 A;  4FZS A;  5KBP A;  4F01 A;  3Q84 A;  3ACO A;  3SYV A;  3B51 X;  3LVT A;  1W9M A;  3D4Y A;  4D8J A;  4EZU A;  2EWF A;  1MJG A;  4B9Q A;  1WDZ A;  1HTY A;  2D1L A;  4E81 A;  3Q0K A;  1JQK A;  2ALW A;  1SU7 A;  2F7O A;  3A98 A;  3F7W A;  2GF4 A;  3RPM A;  4EZZ A;  1QX1 A;  1O7D B;  3DX2 A;  1SU6 A;  3QNJ A;  2LM0 A;  3ZED A;  3BUP A;  3M3W A;  2NCZ A;  3D50 A;  4JN4 A;  2RAK A;  4EZP A;  2F7R A;  4EZT A;  3DPP A;  4R5G A;  3ABH A;  4EZQ A;  3B53 X;  3G9G A;  1E9V A;  3B52 X;  5C5B B;  4HR1 B;  2X3W A;  2ND0 A;  4IM2 A;  4H6I A;  3PLT A;  4JLC A;  3GI7 A;  2YLA A;  1ZYL A;  3BUQ A;  1GN9 A;  4H6H A;  3D52 A;  2ELB A;  3BVW A;  1E1D A;  3OHX M;  3BVV A;  1TQV A;  1GNL A;  2YLL A;  1YWM A;  4UDY X;  4JNF A;  4JWI A;  3T4A G;  3T48 A;  1R34 A;  2X3X A;  2Q13 A;  3KAV A;  3DX3 A;  4FZO A;  3QWE A;  1I49 A;  2O0I 1;  2YL9 A;  4PO2 A;  4HY9 A;  3DYT A;  3HAI A;  1O7D C;  2OBL A;  3CVR A;  3VEB A;  3VEA A;  2F1B A;  1I4L A;  3UIT A;  3D51 A;  2JNK A;  1GNT A;  2F7Q A;  2D4C A;  4AZ5 A;  2YKT A;  2YL6 A;  4IWO A;  1U00 A;  3RV1 A;  2C08 A;  2EFK A;  2ZXQ A;  5TKY A;  1OA1 A;  3L3P A;  1HWW A;  2OO2 A;  3O3O B;  3BVU A;  3CV5 A;  2N3K A;  3D2F A;  4EZR A;  3RV0 A;  3DX1 A;  3CKD A;  3ER9 B;  1E2U A;  4BNE A;  3T46 A;  2YI8 A;  3DPO A;  2X5C A; 
#chains in the Genus database with same CATH homology
 2LXY A;  1LQ7 A;  2MI7 A;  2ZXQ A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

Application loaded.