The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
35
|
sequence length |
105
|
structure length |
105
|
Chain Sequence |
DNVTSSQLLSVRHQLAESAGLPRDQHEFVSSQAPQSLRNRYNNLYSHTQRTLDMADMQHRYMTGASGINPGMLPHENVDDMRSAITDWSDMREALQHAMGIHADI
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
The solution structure of type III effector protein AvrPto reveals conformational and dynamic features important for plant pathogenesis.
pubmed doi rcsb |
| molecule tags |
Protein binding
|
| source organism |
Pseudomonas syringae
|
| molecule keywords |
avirulence protein
|
| total genus |
35
|
| structure length |
105
|
| sequence length |
105
|
| ec nomenclature | |
| pdb deposition date | 2003-10-10 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF11592 | AvrPto | Central core of the bacterial effector protein AvrPto |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Up-down Bundle | Substrate Binding Domain Of Dnak; Chain:A; Domain 2 | AvrPto |
#chains in the Genus database with same CATH superfamily 1R5E A; 2QKW A; #chains in the Genus database with same CATH topology 2EFK A; 3D2F A; 1TQW A; 2JNS A; 2Q13 A; 4E3C A; 2WYI A; 4KIK A; 1TQT A; 2WIN M; 1W9M A; 1YWM A; 4UDY X; 4EZN A; 2O0I 1; 3B52 X; 3BUP A; 1OA1 A; 3BVU A; 2N3K A; 1GNT A; 1SUF A; 2YIA A; 4IM3 A; 4EZU A; 2RT6 A; 3CKD A; 1GN9 A; 4AZI A; 3BVT A; 3ER9 B; 1SU8 A; 3CZS A; 1DKZ A; 1WDZ A; 2PY6 A; 4H6I A; 2F7P A; 2F1A A; 4DCN C; 4EZQ A; 3DX3 A; 4IWQ A; 3DDG A; 2EWF A; 2X3X A; 4R5L A; 3DX4 A; 2Z0N A; 4BNE A; 1R34 A; 2ND0 A; 4AZG A; 1O7D B; 2ZXQ A; 2QFF A; 4IW0 A; 1QWN A; 4NPH A; 3LMF A; 2D1L A; 4R5G A; 3BUQ A; 1E2U A; 3HAJ A; 2YI9 A; 3HAI A; 2F7Q A; 1UPX A; 1ZWW A; 5FIG A; 5FLE X; 3F7W A; 3VEB A; 4AZC B; 3GI7 A; 3QA8 A; 2F1B A; 2C08 A; 3ZED A; 4H6H A; 5C5B A; 3T48 A; 3A98 A; 4FZP A; 3BUD A; 4G6Q A; 1HXK A; 2V0O A; 2Z0V A; 4HYB A; 3DX1 A; 3BVW A; 1MJG A; 1HWW A; 4JNE A; 3QNI A; 1OA0 A; 4WPC A; 1JQK A; 2RAJ A; 4AZH A; 3QWE A; 3C7N A; 2ND1 A; 1E1D A; 2X5C A; 4EZT A; 1DKX A; 3HAH A; 1O7D C; 3EJS A; 3ERC C; 3RV0 A; 2F7R A; 4HY9 A; 4JN4 A; 2GF4 A; 3ABH A; 3T47 A; 4AKV A; 1TQS A; 4R5I A; 3SOG A; 3T49 A; 1E9V A; 1R5E A; 1SU7 A; 3B53 X; 3LLL A; 4ATM A; 3M3W A; 3DX2 A; 3CAZ A; 3LVT A; 3DPQ A; 2RAI A; 1LQ7 A; 2KHO A; 2ALW A; 4WPE A; 2OW6 A; 4KIK B; 4HR1 A; 4EZS A; 1HTY A; 3D4Z A; 2YLL A; 4JLC A; 3UIT A; 3EJR A; 4I1Q A; 4JWI A; 3T4A G; 4R5J A; 2YI8 A; 2F18 A; 5E84 A; 4JWC A; 3DPO A; 4D8J A; 2RAK A; 2X3W A; 4AVM A; 3T46 A; 4M0M A; 2EFL A; 1R33 A; 4JNF A; 4EZW A; 1SU6 A; 4JWE A; 3RPM A; 3D2E A; 3VEA A; 3BUI A; 3KDR A; 2OBM A; 3KAW A; 4IM0 A; 2JNK A; 2FIC A; 3O3O B; 3QE6 A; 3PLT A; 4NQI A; 2Z0O A; 3VKH A; 1ZYL A; 4EZX A; 3D4Y A; 2WYH A; 1OAO A; 3ER8 C; 2GA9 D; 1GNL A; 4PO2 A; 3O3M B; 2Z8Y A; 3BVV A; 4UDX X; 2YL6 A; 3DPP A; 3I01 A; 5C5B B; 2OZN B; 3QNJ A; 3I39 X; 1TQV A; 3BLB A; 1X04 A; 3OK8 A; 3BVX A; 3KAV A; 4E81 A; 2YIB A; 1QX1 A; 2LXY A; 3D50 A; 3Q84 A; 3DDF A; 4EZZ A; 2OW7 A; 3D52 A; 3BUB A; 3FD9 A; 2YKT A; 2YLA A; 1I49 A; 4AZ5 A; 3D51 A; 4B9Q A; 3EJP A; 2OBL A; 3L3O M; 3ACO A; 4EZP A; 1TQU A; 3I04 A; 4JWD A; 4IWO A; 4FZO A; 4AZC A; 1PS3 A; 3CV5 A; 4FZS A; 2Q12 A; 4AZ7 A; 3EJU A; 4F01 A; 4IWP A; 4R5K A; 1I4L A; 1URU A; 4DYL A; 2FYV A; 4JL9 A; 3OHX M; 2LM0 A; 2F7O A; 2D4C A; 1I4D A; 3CVR A; 5TKY A; 3EJQ A; 2YIV X; 1I4T A; 3SYV A; 4EZR A; 1X03 A; 2GAF D; 3G9G A; 3DX0 A; 2NCZ A; 4EZO A; 3EJT A; 4EZV A; 2ELB A; 3CZN A; 2OO2 A; 1DKY A; 2YL5 A; 4AZ6 A; 3RV1 A; 4HR1 B; 3O3N B; 3I2W A; 1Y2O A; 2YL8 A; 2X3V A; 3B51 X; 4IM2 A; 4F00 A; 1QWU A; 2MI7 A; 2EX3 B; 3OWG A; 2PMR A; 1U00 A; 4AZB A; 4H8S A; 4NSW A; 4EZY A; 3L3P A; 3DYT A; 2YL9 A; 2QXL A; 4FM3 A; 5KBP A; 3Q0K A; 2QKW A; #chains in the Genus database with same CATH homology 1R5E A; 2QKW A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
