1R5E | Genus

Total Genus 35

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	35
sequence length	105
structure length	105
Chain Sequence	DNVTSSQLLSVRHQLAESAGLPRDQHEFVSSQAPQSLRNRYNNLYSHTQRTLDMADMQHRYMTGASGINPGMLPHENVDDMRSAITDWSDMREALQHAMGIHADI

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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reading 105 atoms

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105 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Protein binding
source organism	Pseudomonas syringae
publication title	The solution structure of type III effector protein AvrPto reveals conformational and dynamic features important for plant pathogenesis. pubmed doi rcsb
molecule keywords	avirulence protein
total genus	35
structure length	105
sequence length	105
ec nomenclature
pdb deposition date	2003-10-10

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF11592	AvrPto	Central core of the bacterial effector protein AvrPto

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.20.1270.140	Mainly Alpha	Up-down Bundle	Substrate Binding Domain Of Dnak; Chain:A; Domain 2	AvrPto	1r5eA01

2QKWA 1R5EA
chains in the Genus database with same CATH superfamily

4R5IA 1TQTA 4JWDA 4EZOA 3DX2A 2OZNB 3Q84A 1SU8A 1ZYLA 4FZOA 4DYLA 4FZSA 3DYTA 4HYBA 2Z8YA 3D2EA 2Z0NA 4JL9A 3CKDA 3M3WA 3BUPA 2F7QA 3BVXA 2D1LA 3DDGA 1X04A 3G9GA 1JQKA 4JN4A 2N3KA 2X3WA 4EZRA 3EJQA 3GI7A 4EZWA 3EJUA 4NSWA 3CZNA 3CV5A 2F7PA 2WINM 3SOGA 4F00A 4JNFA 2EX3B 2JNSA 3D51A 2LM0A 1HWWA 4HR1B 1SU6A 2ALWA 3CVRA 4EZUA 3RPMA 1TQWA 1R5EA 2F18A 2EFLA 2QFFA 1R33A 2V0OA 1E2UA 4AZGA 3O3NB 1YWMA 3ZEDA 3T48A 4EZYA 3SYVA 2ZXQA 3ERCC 2OW7A 4H6HA 5FIGA 1X03A 4UDYX 2NCZA 3Q0KA 1W9MA 3QE6A 4IM2A 2EWFA 2KHOA 4IM3A 3BVUA 1QWNA 4HY9A 2RAKA 4AVMA 3RV1A 1UPXA 3EJRA 2F1BA 2GAFD 3I2WA 3BUIA 3DPQA 3BVWA 4R5LA 2GA9D 1OA0A 1URUA 2OO2A 2O0I1 1HXKA 1OAOA 2RAJA 3DPPA 3PLTA 2YI8A 3T46A 2GF4A 2YL9A 3L3OM 4EZXA 3ER8C 2F7OA 3QWEA 4AZ5A 4B9QA 1GNLA 3BUQA 3LVTA 1I49A 4FM3A 3OHXM 1O7DC 3B52X 2RAIA 4JWEA 4EZTA 4IWQA 2WYHA 2OW6A 4F01A 1HTYA 4PO2A 3I39X 2ND1A 2Q12A 3BVVA 1ZWWA 3D50A 2OBMA 3FD9A 3LMFA 2ND0A 4BNEA 2Q13A 5KBPA 1QX1A 4WPCA 3UITA 2LXYA 2C08A 1I4TA 4AZCA 2OBLA 1O7DB 2YKTA 2YI9A 2EFKA 1I4LA 1DKZA 1I4DA 4AKVA 4JNEA 4D8JA 3LLLA 3VEBA 2QXLA 3OWGA 4EZNA 1E1DA 2YL6A 3DX1A 3HAHA 1LQ7A 4E3CA 2X3VA 1SU7A 2FYVA 4R5GA 3HAIA 1TQUA 2YL5A 3T4AG 1U00A 2YLAA 2RT6A 4H6IA 3RV0A 4UDXX 3D2FA 2FICA 3DX0A 2YIVX 3QNIA 2ELBA 2YIAA 3VEAA 2PMRA 4G6QA 3BUBA 2PY6A 4NPHA 3OK8A 4IW0A 4IWOA 4AZ7A 1QWUA 3BUDA 2F7RA 4E81A 3HAJA 2X5CA 4KIKA 3DDFA 3D4ZA 4H8SA 4I1QA 3DPOA 4AZCB 5C5BA 3KAWA 3KDRA 3BVTA 4EZQA 1GNTA 4IM0A 2WYIA 3KAVA 4EZVA 3DX4A 4IWPA 3VKHA 3ACOA 4DCNC 4M0MA 1TQSA 4NQIA 3T49A 4R5KA 4AZIA 3O3OB 3C7NA 1E9VA 2YL8A 3BLBA 3I01A 3EJTA 2F1AA 1PS3A 3CAZA 2MI7A 3ER9B 3EJPA 3QA8A 2D4CA 3EJSA 2YLLA 3CZSA 4R5JA 2X3XA 5FLEX 1DKXA 5E84A 3T47A 4JWCA 1R34A 1GN9A 1SUFA 3I04A 4HR1A 1TQVA 4ATMA 4EZSA 2YIBA 2JNKA 3O3MB 1OA1A 1Y2OA 2QKWA 4AZBA 4FZPA 2Z0OA 4AZ6A 3DX3A 3D52A 4AZHA 3F7WA 4WPEA 1DKYA 4KIKB 5TKYA 3L3PA 3B51X 3A98A 3ABHA 3QNJA 4JLCA 1WDZA 5C5BB 2Z0VA 3D4YA 3B53X 1MJGA 4EZZA 4EZPA 4JWIA
chains in the Genus database with same CATH topology

2QKWA 1R5EA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 2QKW A;  1R5E A; 
#chains in the Genus database with same CATH topology
 4R5I A;  1TQT A;  4JWD A;  4EZO A;  3DX2 A;  2OZN B;  3Q84 A;  1SU8 A;  1ZYL A;  4FZO A;  4DYL A;  4FZS A;  3DYT A;  4HYB A;  2Z8Y A;  3D2E A;  2Z0N A;  4JL9 A;  3CKD A;  3M3W A;  3BUP A;  2F7Q A;  3BVX A;  2D1L A;  3DDG A;  1X04 A;  3G9G A;  1JQK A;  4JN4 A;  2N3K A;  2X3W A;  4EZR A;  3EJQ A;  3GI7 A;  4EZW A;  3EJU A;  4NSW A;  3CZN A;  3CV5 A;  2F7P A;  2WIN M;  3SOG A;  4F00 A;  4JNF A;  2EX3 B;  2JNS A;  3D51 A;  2LM0 A;  1HWW A;  4HR1 B;  1SU6 A;  2ALW A;  3CVR A;  4EZU A;  3RPM A;  1TQW A;  1R5E A;  2F18 A;  2EFL A;  2QFF A;  1R33 A;  2V0O A;  1E2U A;  4AZG A;  3O3N B;  1YWM A;  3ZED A;  3T48 A;  4EZY A;  3SYV A;  2ZXQ A;  3ERC C;  2OW7 A;  4H6H A;  5FIG A;  1X03 A;  4UDY X;  2NCZ A;  3Q0K A;  1W9M A;  3QE6 A;  4IM2 A;  2EWF A;  2KHO A;  4IM3 A;  3BVU A;  1QWN A;  4HY9 A;  2RAK A;  4AVM A;  3RV1 A;  1UPX A;  3EJR A;  2F1B A;  2GAF D;  3I2W A;  3BUI A;  3DPQ A;  3BVW A;  4R5L A;  2GA9 D;  1OA0 A;  1URU A;  2OO2 A;  2O0I 1;  1HXK A;  1OAO A;  2RAJ A;  3DPP A;  3PLT A;  2YI8 A;  3T46 A;  2GF4 A;  2YL9 A;  3L3O M;  4EZX A;  3ER8 C;  2F7O A;  3QWE A;  4AZ5 A;  4B9Q A;  1GNL A;  3BUQ A;  3LVT A;  1I49 A;  4FM3 A;  3OHX M;  1O7D C;  3B52 X;  2RAI A;  4JWE A;  4EZT A;  4IWQ A;  2WYH A;  2OW6 A;  4F01 A;  1HTY A;  4PO2 A;  3I39 X;  2ND1 A;  2Q12 A;  3BVV A;  1ZWW A;  3D50 A;  2OBM A;  3FD9 A;  3LMF A;  2ND0 A;  4BNE A;  2Q13 A;  5KBP A;  1QX1 A;  4WPC A;  3UIT A;  2LXY A;  2C08 A;  1I4T A;  4AZC A;  2OBL A;  1O7D B;  2YKT A;  2YI9 A;  2EFK A;  1I4L A;  1DKZ A;  1I4D A;  4AKV A;  4JNE A;  4D8J A;  3LLL A;  3VEB A;  2QXL A;  3OWG A;  4EZN A;  1E1D A;  2YL6 A;  3DX1 A;  3HAH A;  1LQ7 A;  4E3C A;  2X3V A;  1SU7 A;  2FYV A;  4R5G A;  3HAI A;  1TQU A;  2YL5 A;  3T4A G;  1U00 A;  2YLA A;  2RT6 A;  4H6I A;  3RV0 A;  4UDX X;  3D2F A;  2FIC A;  3DX0 A;  2YIV X;  3QNI A;  2ELB A;  2YIA A;  3VEA A;  2PMR A;  4G6Q A;  3BUB A;  2PY6 A;  4NPH A;  3OK8 A;  4IW0 A;  4IWO A;  4AZ7 A;  1QWU A;  3BUD A;  2F7R A;  4E81 A;  3HAJ A;  2X5C A;  4KIK A;  3DDF A;  3D4Z A;  4H8S A;  4I1Q A;  3DPO A;  4AZC B;  5C5B A;  3KAW A;  3KDR A;  3BVT A;  4EZQ A;  1GNT A;  4IM0 A;  2WYI A;  3KAV A;  4EZV A;  3DX4 A;  4IWP A;  3VKH A;  3ACO A;  4DCN C;  4M0M A;  1TQS A;  4NQI A;  3T49 A;  4R5K A;  4AZI A;  3O3O B;  3C7N A;  1E9V A;  2YL8 A;  3BLB A;  3I01 A;  3EJT A;  2F1A A;  1PS3 A;  3CAZ A;  2MI7 A;  3ER9 B;  3EJP A;  3QA8 A;  2D4C A;  3EJS A;  2YLL A;  3CZS A;  4R5J A;  2X3X A;  5FLE X;  1DKX A;  5E84 A;  3T47 A;  4JWC A;  1R34 A;  1GN9 A;  1SUF A;  3I04 A;  4HR1 A;  1TQV A;  4ATM A;  4EZS A;  2YIB A;  2JNK A;  3O3M B;  1OA1 A;  1Y2O A;  2QKW A;  4AZB A;  4FZP A;  2Z0O A;  4AZ6 A;  3DX3 A;  3D52 A;  4AZH A;  3F7W A;  4WPE A;  1DKY A;  4KIK B;  5TKY A;  3L3P A;  3B51 X;  3A98 A;  3ABH A;  3QNJ A;  4JLC A;  1WDZ A;  5C5B B;  2Z0V A;  3D4Y A;  3B53 X;  1MJG A;  4EZZ A;  4EZP A;  4JWI A; 
#chains in the Genus database with same CATH homology
 2QKW A;  1R5E A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1R5EA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations