1TD6 | Genus

Total Genus 89

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	89
sequence length	286
structure length	286
Chain Sequence	PNQFVNHLSALKKHFASYKELREAFNDYHKHNGDELTTFFLHQFDKVMELVKQKDFKTAQSRCEEELAAPYLPKPLVSFFQSLLQLVNHDLLEQQNAALASLPAAKIIELVLQDYPNKLNMIHYLLPKTKAFVKPHLLQRLQFVLTDSELLELKRFSFFQALNQIPGFQGEQVEYFNSKLKQKFTLTLGEFEIAQQPDAKAYFEQLITQIQQLFLKEPVNAEFANEIIDAFLVSYFPLHPPVPLAQLAAKIYEYVSQIVLNEAVNLKDELIKLIVHTLYEQLDRPV

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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reading 286 atoms

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286 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Structural genomics, unknown function
source organism	Mycoplasma pneumoniae
publication title	Crystal structure of the conserved hypothetical protein MPN330 (GI: 1674200) from Mycoplasma pneumoniae. pubmed doi rcsb
molecule keywords	Hypothetical protein MG237 homolog
total genus	89
structure length	286
sequence length	286
ec nomenclature
pdb deposition date	2004-05-21

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF11428	DUF3196	Protein of unknown function (DUF3196)

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.472.40	Mainly Alpha	Orthogonal Bundle	Cyclin A; domain 1	Hypothetical protein mg237 homolog; domain 3	1td6A03
1.20.1480.10	Mainly Alpha	Up-down Bundle	hypothetical protein mp506/mpn330, domain 1	hypothetical protein mp506/mpn330, domain 1	1td6A01
3.30.1790.10	Alpha Beta	2-Layer Sandwich	hypothetical protein mp506/mpn330, domain 2	hypothetical protein mp506/mpn330, domain 2	1td6A02

1TD6A
chains in the Genus database with same CATH superfamily

2PK2A 4UN0A 2WHBB 4CFVB 4OB1B 2UZDB 1GUXB 2W96A 3VKGA 4FX3B 5CEIB 1V9VA 2CZ7B 4ROEA 4RODA 2ZPEB 4EC9B 1OIYB 2C5NB 4CFUB 3X28B 4EOSB 3H4CA 1UNHD 4IMYB 4ZGJB 1C9BA 2ZPBB 4BBSM 5LMKB 4BCQB 3B57A 4CFWB 4Y72B 2BKZB 4BXXX 4KRDB 4YC3B 2G77A 3QHRB 4BCOB 1QMZB 4HNVA 2UZBB 2C6TB 4QSHA 3EJ1B 4EOOB 4ZGDB 2DD5B 5I5ZB 5DQVA 4L3UA 1GY3B 1H26B 1UGPB 4F6SB 2DXBB 2CCHB 1XO2A 5DQWA 4CXAB 4EOQB 5HBHB 2QF7A 1G3NC 2WPAB 4OB2B 4HLQA 3BLHB 4EC8B 4ELJA 2C5OB 4YOZA 4EOKB 4G6LB 4MFDA 3DTOA 2ZPHB 2EUFA 4EOPB 1PKDB 1E9HB 4Z6YA 2G9XB 2W99A 4OB3B 4F7LB 2DMEA 2CZ6B 4CFXB 4F70B 4ELLA 2CJMB 5FGKB 2D0QB 4M6VA 3VKHA 4BCND 1D3UB 4BY7X 1H1SB 2R7GA 1JKWA 1IREB 3HHTB 4CRLB 2CZ0B 3MI9B 4EOIB 1FKMA 3A8LB 3QYEA 4EONB 3EOCB 2ZPIB 2ZPGB 1JSUB 3MY1B 3QXEB 3DOGB 3BHTB 5IDPB 3VYGB 2PMIB 4HL4A 5LQFB 3QYHB 3X20B 3TW7A 3BLQB 1ZP2A 2UZLB 3DL1A 2B9RA 4GN0A 2I40B 2WEVB 4OB0B 3BHUB 2WIHB 2AHJB 3X26B 3TNHB 3PO3S 3TNIB 3BLRB 2PJQA 3QWLA 4F7SB 1H1PB 3VJFA 1JSTB 1OI9B 3DDPB 4II5B 2C5XB 2CYZB 1TFBA 1OL1B 1FVVB 5HVYB 3QZ9B 3A8HB 4YOOA 3HBLA 2ZZDB 5IF1B 4LOCA 1AISB 1TD6A 4CFUD 2WFYB 2DD4B 2W9ZA 2IW8B 1AD6A 3K7AM 1VINA 2M9XA 2WMBB 4BCMB 3BG9A 4EORB 2PK9B 4NC6A 2W9FA 5IHYA 1V29B 1OL2B 1ENWA 2V22B 1O9KA 2KMGA 4AKHA 2DXCB 2C4GB 3X25B 2BPMB 3QYGB 3WVDB 3F5XB 4MFEA 3TW6A 1H28B 2WMAB 1JOWA 5L2WB 2JGZB 1F5QB 2DPPB 4BCGB 4BCPB 2PHGA 4F6WB 3EIDB 2QGSA 1N4MA 2IW9B 3BG3A 2QDJA 1H24B 3A8OB 4EOMB 4EOJB 2ZCFB 1H1RB 1AHJB 4F7NB 5CYIB 1H1QB 4HNUA 4BCFB 4JX5A 1OIUB 5HBEB 3QHWB 4BCJB 1QLBA 2IW6B 5ICPB 3G33B 2LW4A 2JUAA 1UGQB 5HQ0B 4OR5B 2QDYB 1OGUB 1KXUA 1FINB 3GTMS 3BG5A 1UGSB 4CFMB 1UNLD 2CZ1B 4BCIB 1BU2A 1W98B 4BY1X 4F6UB 4ZGEB 2UZEB 3KHIA 3POMA 2W2HA 4EOLB 1H27B 1OKVB 1OKWB 2WIPB 3WVEB 2CCIB 2BS3A 4HNTA 3DDQB 4FM4B 4CQ4A 5EJCA 1VYWB 1UNGD 1P5EB 2C5VB 1P68A 4AKIA 4MIMA 3TNWB 4BCNB 3BHVB 1H25B 3MIAB 2I53A 4BCQD 3X24B 2WJ9A 5HBJB 4NSTB 2QQ8A 4BCKB 1H4LD 3LQ5B 2ZPFB 3QZ5B 4AI6A 2IVXA 3HZJA 2X1NB 4ROCA 1VOLA 4YOSA 3TN8B 4JX4A 1E7PA 2WXVB 4KRCB 3HO8A 4AKGA 3A8GB 4OGRB 1UGRB 2F2CA 4JX6A 1GUXA 3RGFB 4BCHB 3O0GD 3HB9A 3DJBA 4BCMD 5IDNB 3QYBA 2QFZA 2UUEB 4F7JB 4I3ZB 3VYHB 4BBRM 1O9KB 3M03A 3MY5B 2BS2A 2IN3A 2KR6A 5EFQB 1URCB 5HNBB 3NDQA 3A8MB 2BS4A 1GH6B 4CFNB 5ACBA 4TTHA 5BNJB
chains in the Genus database with same CATH topology

1TD6A 4L3UA 4GN0A 4CQ4A
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 1TD6 A; 
#chains in the Genus database with same CATH topology
 2PK2 A;  4UN0 A;  2WHB B;  4CFV B;  4OB1 B;  2UZD B;  1GUX B;  2W96 A;  3VKG A;  4FX3 B;  5CEI B;  1V9V A;  2CZ7 B;  4ROE A;  4ROD A;  2ZPE B;  4EC9 B;  1OIY B;  2C5N B;  4CFU B;  3X28 B;  4EOS B;  3H4C A;  1UNH D;  4IMY B;  4ZGJ B;  1C9B A;  2ZPB B;  4BBS M;  5LMK B;  4BCQ B;  3B57 A;  4CFW B;  4Y72 B;  2BKZ B;  4BXX X;  4KRD B;  4YC3 B;  2G77 A;  3QHR B;  4BCO B;  1QMZ B;  4HNV A;  2UZB B;  2C6T B;  4QSH A;  3EJ1 B;  4EOO B;  4ZGD B;  2DD5 B;  5I5Z B;  5DQV A;  4L3U A;  1GY3 B;  1H26 B;  1UGP B;  4F6S B;  2DXB B;  2CCH B;  1XO2 A;  5DQW A;  4CXA B;  4EOQ B;  5HBH B;  2QF7 A;  1G3N C;  2WPA B;  4OB2 B;  4HLQ A;  3BLH B;  4EC8 B;  4ELJ A;  2C5O B;  4YOZ A;  4EOK B;  4G6L B;  4MFD A;  3DTO A;  2ZPH B;  2EUF A;  4EOP B;  1PKD B;  1E9H B;  4Z6Y A;  2G9X B;  2W99 A;  4OB3 B;  4F7L B;  2DME A;  2CZ6 B;  4CFX B;  4F70 B;  4ELL A;  2CJM B;  5FGK B;  2D0Q B;  4M6V A;  3VKH A;  4BCN D;  1D3U B;  4BY7 X;  1H1S B;  2R7G A;  1JKW A;  1IRE B;  3HHT B;  4CRL B;  2CZ0 B;  3MI9 B;  4EOI B;  1FKM A;  3A8L B;  3QYE A;  4EON B;  3EOC B;  2ZPI B;  2ZPG B;  1JSU B;  3MY1 B;  3QXE B;  3DOG B;  3BHT B;  5IDP B;  3VYG B;  2PMI B;  4HL4 A;  5LQF B;  3QYH B;  3X20 B;  3TW7 A;  3BLQ B;  1ZP2 A;  2UZL B;  3DL1 A;  2B9R A;  4GN0 A;  2I40 B;  2WEV B;  4OB0 B;  3BHU B;  2WIH B;  2AHJ B;  3X26 B;  3TNH B;  3PO3 S;  3TNI B;  3BLR B;  2PJQ A;  3QWL A;  4F7S B;  1H1P B;  3VJF A;  1JST B;  1OI9 B;  3DDP B;  4II5 B;  2C5X B;  2CYZ B;  1TFB A;  1OL1 B;  1FVV B;  5HVY B;  3QZ9 B;  3A8H B;  4YOO A;  3HBL A;  2ZZD B;  5IF1 B;  4LOC A;  1AIS B;  1TD6 A;  4CFU D;  2WFY B;  2DD4 B;  2W9Z A;  2IW8 B;  1AD6 A;  3K7A M;  1VIN A;  2M9X A;  2WMB B;  4BCM B;  3BG9 A;  4EOR B;  2PK9 B;  4NC6 A;  2W9F A;  5IHY A;  1V29 B;  1OL2 B;  1ENW A;  2V22 B;  1O9K A;  2KMG A;  4AKH A;  2DXC B;  2C4G B;  3X25 B;  2BPM B;  3QYG B;  3WVD B;  3F5X B;  4MFE A;  3TW6 A;  1H28 B;  2WMA B;  1JOW A;  5L2W B;  2JGZ B;  1F5Q B;  2DPP B;  4BCG B;  4BCP B;  2PHG A;  4F6W B;  3EID B;  2QGS A;  1N4M A;  2IW9 B;  3BG3 A;  2QDJ A;  1H24 B;  3A8O B;  4EOM B;  4EOJ B;  2ZCF B;  1H1R B;  1AHJ B;  4F7N B;  5CYI B;  1H1Q B;  4HNU A;  4BCF B;  4JX5 A;  1OIU B;  5HBE B;  3QHW B;  4BCJ B;  1QLB A;  2IW6 B;  5ICP B;  3G33 B;  2LW4 A;  2JUA A;  1UGQ B;  5HQ0 B;  4OR5 B;  2QDY B;  1OGU B;  1KXU A;  1FIN B;  3GTM S;  3BG5 A;  1UGS B;  4CFM B;  1UNL D;  2CZ1 B;  4BCI B;  1BU2 A;  1W98 B;  4BY1 X;  4F6U B;  4ZGE B;  2UZE B;  3KHI A;  3POM A;  2W2H A;  4EOL B;  1H27 B;  1OKV B;  1OKW B;  2WIP B;  3WVE B;  2CCI B;  2BS3 A;  4HNT A;  3DDQ B;  4FM4 B;  4CQ4 A;  5EJC A;  1VYW B;  1UNG D;  1P5E B;  2C5V B;  1P68 A;  4AKI A;  4MIM A;  3TNW B;  4BCN B;  3BHV B;  1H25 B;  3MIA B;  2I53 A;  4BCQ D;  3X24 B;  2WJ9 A;  5HBJ B;  4NST B;  2QQ8 A;  4BCK B;  1H4L D;  3LQ5 B;  2ZPF B;  3QZ5 B;  4AI6 A;  2IVX A;  3HZJ A;  2X1N B;  4ROC A;  1VOL A;  4YOS A;  3TN8 B;  4JX4 A;  1E7P A;  2WXV B;  4KRC B;  3HO8 A;  4AKG A;  3A8G B;  4OGR B;  1UGR B;  2F2C A;  4JX6 A;  1GUX A;  3RGF B;  4BCH B;  3O0G D;  3HB9 A;  3DJB A;  4BCM D;  5IDN B;  3QYB A;  2QFZ A;  2UUE B;  4F7J B;  4I3Z B;  3VYH B;  4BBR M;  1O9K B;  3M03 A;  3MY5 B;  2BS2 A;  2IN3 A;  2KR6 A;  5EFQ B;  1URC B;  5HNB B;  3NDQ A;  3A8M B;  2BS4 A;  1GH6 B;  4CFN B;  5ACB A;  4TTH A;  5BNJ B; 
#chains in the Genus database with same CATH homology
 1TD6 A;  4L3U A;  4GN0 A;  4CQ4 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1TD6A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations