The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
89
|
sequence length |
286
|
structure length |
286
|
Chain Sequence |
PNQFVNHLSALKKHFASYKELREAFNDYHKHNGDELTTFFLHQFDKVMELVKQKDFKTAQSRCEEELAAPYLPKPLVSFFQSLLQLVNHDLLEQQNAALASLPAAKIIELVLQDYPNKLNMIHYLLPKTKAFVKPHLLQRLQFVLTDSELLELKRFSFFQALNQIPGFQGEQVEYFNSKLKQKFTLTLGEFEIAQQPDAKAYFEQLITQIQQLFLKEPVNAEFANEIIDAFLVSYFPLHPPVPLAQLAAKIYEYVSQIVLNEAVNLKDELIKLIVHTLYEQLDRPV
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Crystal structure of the conserved hypothetical protein MPN330 (GI: 1674200) from Mycoplasma pneumoniae.
pubmed doi rcsb |
| molecule tags |
Structural genomics, unknown function
|
| source organism |
Mycoplasma pneumoniae
|
| molecule keywords |
Hypothetical protein MG237 homolog
|
| total genus |
89
|
| structure length |
286
|
| sequence length |
286
|
| ec nomenclature | |
| pdb deposition date | 2004-05-21 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF11428 | DUF3196 | Protein of unknown function (DUF3196) |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Orthogonal Bundle | Cyclin A; domain 1 | Hypothetical protein mg237 homolog; domain 3 | ||
| Mainly Alpha | Up-down Bundle | hypothetical protein mp506/mpn330, domain 1 | hypothetical protein mp506/mpn330, domain 1 | ||
| Alpha Beta | 2-Layer Sandwich | hypothetical protein mp506/mpn330, domain 2 | hypothetical protein mp506/mpn330, domain 2 |
#chains in the Genus database with same CATH superfamily 1TD6 A; #chains in the Genus database with same CATH topology 2ZPE B; 1F5Q B; 4YOZ A; 5IHY A; 1H1P B; 4BCG B; 4BCM B; 3WVE B; 3DJB A; 2C5O B; 1UGQ B; 1AD6 A; 2W9Z A; 2F2C A; 3NDQ A; 2WHB B; 4TTH A; 2UZE B; 2CYZ B; 3HBL A; 3A8O B; 4MFD A; 4GN0 A; 3MIA B; 4ROD A; 1OKW B; 1BU2 A; 4MFE A; 4JX4 A; 4BCQ B; 4CFX B; 2D0Q B; 3MI9 B; 2BS3 A; 3RGF B; 4CFV B; 3DDQ B; 2G77 A; 2PK2 A; 1KXU A; 3QZ9 B; 4AKI A; 4BCP B; 2R7G A; 4HLQ A; 4EOQ B; 2BKZ B; 2WXV B; 3X24 B; 3VYG B; 1W98 B; 4MIM A; 4BCO B; 4NST B; 1E7P A; 2CZ1 B; 1OIU B; 2IVX A; 2JUA A; 3QYG B; 2QF7 A; 4BY7 X; 2JGZ B; 4ELJ A; 1OIY B; 1H4L D; 4BCQ D; 2ZPH B; 5HBE B; 2ZCF B; 5HBH B; 2V22 B; 3LQ5 B; 1OI9 B; 1N4M A; 1V29 B; 4JX6 A; 2WIP B; 2W2H A; 4II5 B; 2CCI B; 4OGR B; 4F7S B; 3QZ5 B; 1H27 B; 3EID B; 1XO2 A; 3HB9 A; 4IMY B; 1H25 B; 1JST B; 5IF1 B; 1H26 B; 3A8G B; 1IRE B; 4EOS B; 4Y72 B; 3TW6 A; 4BCN B; 4AKG A; 1D3U B; 4AI6 A; 3HHT B; 1H1S B; 1OL1 B; 3MY5 B; 2BS4 A; 3GTM S; 2DD4 B; 1GUX B; 1G3N C; 2C5V B; 4EOI B; 1JOW A; 2C6T B; 3HO8 A; 2UZL B; 4F7L B; 3TNH B; 4M6V A; 2I53 A; 1P5E B; 1GH6 B; 1UNH D; 5I5Z B; 1QMZ B; 3QXE B; 4F7N B; 4CFU D; 1V9V A; 2C5X B; 3TW7 A; 4CFN B; 4G6L B; 4BCN D; 1GUX A; 4EOL B; 4OR5 B; 4ZGE B; 5DQV A; 4Z6Y A; 3BHV B; 2ZZD B; 3QWL A; 2PHG A; 4ROE A; 3A8M B; 4QSH A; 4BY1 X; 5ACB A; 2BPM B; 2ZPB B; 1UGP B; 1OL2 B; 5FGK B; 1E9H B; 3BLR B; 2ZPF B; 1PKD B; 4BXX X; 4EOM B; 1QLB A; 5HQ0 B; 4EON B; 4HNT A; 4CFW B; 2I40 B; 2IW9 B; 2DPP B; 4ELL A; 1AHJ B; 5LMK B; 2QFZ A; 4EOP B; 2ZPG B; 2KMG A; 3HZJ A; 5CEI B; 4L3U A; 4JX5 A; 2WFY B; 3F5X B; 3K7A M; 5EJC A; 4BCJ B; 1H28 B; 5HVY B; 1UNG D; 1ZP2 A; 4CFU B; 2C4G B; 4F70 B; 4ROC A; 4I3Z B; 2CCH B; 4FX3 B; 2DD5 B; 2G9X B; 2CJM B; 1OKV B; 4UN0 A; 4YOS A; 4AKH A; 2LW4 A; 3VYH B; 4HL4 A; 5HBJ B; 3QYE A; 1VIN A; 1GY3 B; 3BLQ B; 3QHW B; 5ICP B; 3VKH A; 2PK9 B; 2WMB B; 3POM A; 3X25 B; 3BG9 A; 5IDN B; 4BCI B; 2DXB B; 5DQW A; 3O0G D; 3TNW B; 3EOC B; 2UUE B; 2CZ7 B; 3BHT B; 3DOG B; 2BS2 A; 4KRC B; 3VKG A; 3A8H B; 2M9X A; 4HNV A; 1TD6 A; 4KRD B; 3M03 A; 4OB3 B; 3KHI A; 2WIH B; 3DL1 A; 4F6S B; 4BBR M; 3VJF A; 2KR6 A; 4CFM B; 5BNJ B; 2X1N B; 3BHU B; 2ZPI B; 4CRL B; 3X28 B; 4EOR B; 3TNI B; 5HNB B; 3PO3 S; 2WEV B; 5L2W B; 2QGS A; 1OGU B; 1H24 B; 1AIS B; 1VOL A; 2QDJ A; 4OB0 B; 4F6U B; 4BCF B; 4EC9 B; 5LQF B; 1H1Q B; 2IW6 B; 2UZB B; 3TN8 B; 4HNU A; 1JKW A; 2W9F A; 1FVV B; 1O9K B; 4BBS M; 2EUF A; 3QHR B; 4CXA B; 4BCM D; 2WJ9 A; 2DME A; 3WVD B; 3QYB A; 4FM4 B; 2CZ6 B; 3X26 B; 1ENW A; 2IN3 A; 3BG5 A; 4YC3 B; 2WMA B; 4F7J B; 5EFQ B; 4EOO B; 4BCK B; 4ZGD B; 3QYH B; 2CZ0 B; 1JSU B; 2QQ8 A; 1H1R B; 5IDP B; 4YOO A; 4BCH B; 2B9R A; 2W99 A; 2UZD B; 2QDY B; 1O9K A; 2AHJ B; 4F6W B; 2IW8 B; 3A8L B; 1URC B; 5CYI B; 1TFB A; 3G33 B; 1UNL D; 1FKM A; 3MY1 B; 1UGS B; 3BLH B; 3B57 A; 1VYW B; 3DTO A; 4OB1 B; 1UGR B; 1P68 A; 4OB2 B; 4EOK B; 4LOC A; 3BG3 A; 3EJ1 B; 4NC6 A; 2PMI B; 4CQ4 A; 2W96 A; 4EC8 B; 4ZGJ B; 3H4C A; 1C9B A; 2C5N B; 2DXC B; 3X20 B; 3DDP B; 2PJQ A; 4EOJ B; 1FIN B; 2WPA B; #chains in the Genus database with same CATH homology 4GN0 A; 4CQ4 A; 4L3U A; 1TD6 A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
