2G77A

Crystal structure of gyp1 tbc domain in complex with rab33 gtpase bound to gdp and alf3
Total Genus 135
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
135
sequence length
388
structure length
331
Chain Sequence
QELNSIIQRISKFDNILKDKTIINQQDLRQISWNGIPKIHRPVVWKLLIGYLPVNTKRQEGFLQRKRKEYRDSLKHTFSDQHSRDIPTWHQIEIDIPRTNPHIPLYQFKSVQNSLQRILYLWAIRHPASGYVQGINDLVTPFFETFLTEYLPPSQIDDVKIKDPSTYMVDEQITDLEADTFWCLTKLLEQITDNYIHGQPGILRQVKNLSQLVKRIDADLYNHFQNEHVEFIQFAFRWMNCLLMREFQMGTVIRMWDTYLSETSQQSSLNEFHVFVCAAFLIKWSDQLMEMDFQETITFLQNPPTKDWTETDIEMLLSEAFIWQSLYKDAT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase activator/protein transport
molecule keywords GTPase-activating protein GYP1
publication title TBC-domain GAPs for Rab GTPases accelerate GTP hydrolysis by a dual-finger mechanism.
pubmed doi rcsb
source organism Saccharomyces cerevisiae
total genus 135
structure length 331
sequence length 388
ec nomenclature
pdb deposition date 2006-02-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00566 RabGAP-TBC Rab-GTPase-TBC domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.472.80 Mainly Alpha Orthogonal Bundle Cyclin A; domain 1 Cyclin A; domain 1 2g77A02
2G77A 4Z6YA 2QQ8A 3QWLA 3QYEA 3HZJA 3QYBA 4HLQA 1FKMA 4NC6A 4HL4A 5EJCA 2QFZA
chains in the Genus database with same CATH superfamily
4BCMB 2WIPB 4EOPB 2B9RA 1N4MA 2CCHB 4OB2B 4CFUD 2W2HA 2F2CA 4EOOB 3DL1A 1H28B 4CFXB 2WMBB 3QHWB 2CYZB 2DD4B 1OI9B 4CFNB 1OKWB 4BCQB 3TN8B 5LQFB 2C5VB 2CCIB 4UN0A 4ELJA 2DXCB 2PMIB 1UGPB 3DOGB 4JX4A 4FM4B 1PKDB 3QZ9B 3F5XB 3WVDB 1GUXA 3DDPB 2QQ8A 1H1RB 3HB9A 2R7GA 2C6TB 5IHYA 1OL2B 1TFBA 1ZP2A 1GY3B 4RODA 4AI6A 3A8OB 2I53A 3QYHB 5IF1B 2PJQA 1FINB 4ZGEB 2UZDB 2BKZB 2WEVB 4EONB 4BCIB 4BCNB 2PK2A 3QYBA 2D0QB 3X25B 4BBSM 5ICPB 1OIYB 3RGFB 2WMAB 2WIHB 3DDQB 1OIUB 4KRDB 1E9HB 5HQ0B 1FVVB 1JSTB 4EOSB 3HHTB 2ZCFB 3LQ5B 4F6WB 2W96A 3BLHB 2ZPBB 4MFEA 4HNTA 1H1QB 2ZPGB 3BHVB 4MFDA 2ZPEB 5CEIB 4ZGDB 2UZBB 3MY1B 1H1PB 2AHJB 4CFMB 3PO3S 4OB3B 2IVXA 1JKWA 4YOZA 1GUXB 3BG3A 4QSHA 4CRLB 1VYWB 4KRCB 3VYHB 4AKIA 4OGRB 2LW4A 3MI9B 5HNBB 3EIDB 4HL4A 1VOLA 1XO2A 4ZGJB 1P5EB 4BY1X 4YC3B 2WPAB 1VINA 2IN3A 2W9ZA 4YOOA 2IW9B 2JGZB 3BLQB 4AKHA 2CZ1B 3VKHA 2EUFA 5FGKB 5IDPB 4F7JB 5DQWA 1QLBA 2BS4A 3X20B 1AISB 4OR5B 3TNHB 4EOQB 4MIMA 1UNLD 2PHGA 5L2WB 3BHUB 3O0GD 4AKGA 5ACBA 3VYGB 1ENWA 4EC8B 4EORB 3QXEB 3K7AM 4BCMD 1JSUB 4ROEA 2DPPB 4F6UB 2C5OB 2QGSA 2DD5B 2QFZA 4F6SB 2DXBB 3WVEB 2CZ0B 1AD6A 5EJCA 2W99A 1OKVB 4CFUB 3MY5B 3QZ5B 4EOJB 3GTMS 5EFQB 2C4GB 2ZZDB 3QYGB 3H4CA 3POMA 1O9KA 3EJ1B 1UGSB 4BCQD 4II5B 4NSTB 4Y72B 4TTHA 4BXXX 2QF7A 1UNGD 1H1SB 3B57A 4M6VA 1KXUA 1IREB 1F5QB 4F7NB 1OGUB 3A8LB 3NDQA 1H25B 1D3UB 3MIAB 3X26B 4OB1B 4F70B 2C5NB 3QHRB 4YOSA 1W98B 2IW6B 3QWLA 3TW6A 4HNVA 4JX6A 5HBEB 2X1NB 1BU2A 1E7PA 2UZEB 1H24B 2DMEA 5DQVA 4BCOB 2UZLB 2ZPFB 2ZPHB 2I40B 4F7SB 1URCB 4EOIB 1UGRB 3BG5A 4BCPB 2BPMB 4EC9B 3BG9A 1H4LD 4CXAB 5HVYB 1H27B 4G6LB 4FX3B 3TW7A 2W9FA 2WHBB 2KMGA 4EOKB 4ELLA 2IW8B 3DJBA 2BS3A 4BCHB 2BS2A 1FKMA 1GH6B 4BCFB 1O9KB 4EOLB 3M03A 5HBJB 2C5XB 3BHTB 5BNJB 3HBLA 1UNHD 4I3ZB 2KR6A 4BCGB 3VKGA 2UUEB 1TD6A 1C9BA 2QDYB 3TNWB 3X24B 3BLRB 1V29B 3QYEA 5IDNB 1JOWA 2CZ6B 2CJMB 1H26B 5HBHB 4BCKB 3HZJA 1OL1B 4JX5A 2WFYB 2G9XB 2V22B 4IMYB 5I5ZB 4BY7X 4OB0B 2ZPIB 4LOCA 2PK9B 3A8HB 3KHIA 4CFVB 1QMZB 3DTOA 5LMKB 2G77A 4EOMB 4BBRM 3G33B 3X28B 1UGQB 4ROCA 3EOCB 3HO8A 4CFWB 3A8GB 4HLQA 2WXVB 4BCJB 5CYIB 1AHJB 1G3NC 4NC6A 3A8MB 4Z6YA 2QDJA 3TNIB 4F7LB 2CZ7B 4BCND 4HNUA 2WJ9A
chains in the Genus database with same CATH topology
2DPPB 3BG9A 2DD5B 3HHTB 2QFZA 2DXBB 2ZCFB 3TW7A 3WVEB 2CZ0B 4OB2B 2KMGA 5EJCA 2ZPBB 2BS3A 2BS2A 1FKMA 3DL1A 4MFEA 4HNTA 3QZ5B 2ZPGB 4MFDA 2ZPEB 2ZZDB 3QYGB 3H4CA 4ZGDB 3HBLA 2CYZB 2DD4B 2KR6A 3VKGA 2QDYB 1UGSB 3X24B 2AHJB 1V29B 3QYEA 4OB3B 2CZ6B 3BG3A 4ELJA 4QSHA 2DXCB 2QF7A 3VYHB 4AKIA 1UGPB 4JX4A 3HZJA 4FM4B 4JX5A 3QZ9B 3WVDB 4HL4A 4M6VA 2QQ8A 3HB9A 1IREB 4ZGJB 4OB0B 2ZPIB 4LOCA 3A8HB 3KHIA 3A8LB 4AI6A 3A8OB 2G77A 3X26B 4AKHA 3QYHB 4OB1B 4BBRM 2CZ1B 3X28B 3VKHA 4ZGEB 1UGQB 3QYBA 3HO8A 3A8GB 4HLQA 1QLBA 2D0QB 2BS4A 3X25B 4BBSM 3X20B 3QWLA 3TW6A 4HNVA 4JX6A 1AHJB 4MIMA 1E7PA 4NC6A 3A8MB 4Z6YA 2QDJA 4AKGA 3VYGB 2ZPFB 2ZPHB 3QXEB 2CZ7B 1UGRB 3BG5A 4HNUA 2WJ9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2G77 A;  4Z6Y A;  2QQ8 A;  3QWL A;  3QYE A;  3HZJ A;  3QYB A;  4HLQ A;  1FKM A;  4NC6 A;  4HL4 A;  5EJC A;  2QFZ A; 
#chains in the Genus database with same CATH topology
 4BCM B;  2WIP B;  4EOP B;  2B9R A;  1N4M A;  2CCH B;  4OB2 B;  4CFU D;  2W2H A;  2F2C A;  4EOO B;  3DL1 A;  1H28 B;  4CFX B;  2WMB B;  3QHW B;  2CYZ B;  2DD4 B;  1OI9 B;  4CFN B;  1OKW B;  4BCQ B;  3TN8 B;  5LQF B;  2C5V B;  2CCI B;  4UN0 A;  4ELJ A;  2DXC B;  2PMI B;  1UGP B;  3DOG B;  4JX4 A;  4FM4 B;  1PKD B;  3QZ9 B;  3F5X B;  3WVD B;  1GUX A;  3DDP B;  2QQ8 A;  1H1R B;  3HB9 A;  2R7G A;  2C6T B;  5IHY A;  1OL2 B;  1TFB A;  1ZP2 A;  1GY3 B;  4ROD A;  4AI6 A;  3A8O B;  2I53 A;  3QYH B;  5IF1 B;  2PJQ A;  1FIN B;  4ZGE B;  2UZD B;  2BKZ B;  2WEV B;  4EON B;  4BCI B;  4BCN B;  2PK2 A;  3QYB A;  2D0Q B;  3X25 B;  4BBS M;  5ICP B;  1OIY B;  3RGF B;  2WMA B;  2WIH B;  3DDQ B;  1OIU B;  4KRD B;  1E9H B;  5HQ0 B;  1FVV B;  1JST B;  4EOS B;  3HHT B;  2ZCF B;  3LQ5 B;  4F6W B;  2W96 A;  3BLH B;  2ZPB B;  4MFE A;  4HNT A;  1H1Q B;  2ZPG B;  3BHV B;  4MFD A;  2ZPE B;  5CEI B;  4ZGD B;  2UZB B;  3MY1 B;  1H1P B;  2AHJ B;  4CFM B;  3PO3 S;  4OB3 B;  2IVX A;  1JKW A;  4YOZ A;  1GUX B;  3BG3 A;  4QSH A;  4CRL B;  1VYW B;  4KRC B;  3VYH B;  4AKI A;  4OGR B;  2LW4 A;  3MI9 B;  5HNB B;  3EID B;  4HL4 A;  1VOL A;  1XO2 A;  4ZGJ B;  1P5E B;  4BY1 X;  4YC3 B;  2WPA B;  1VIN A;  2IN3 A;  2W9Z A;  4YOO A;  2IW9 B;  2JGZ B;  3BLQ B;  4AKH A;  2CZ1 B;  3VKH A;  2EUF A;  5FGK B;  5IDP B;  4F7J B;  5DQW A;  1QLB A;  2BS4 A;  3X20 B;  1AIS B;  4OR5 B;  3TNH B;  4EOQ B;  4MIM A;  1UNL D;  2PHG A;  5L2W B;  3BHU B;  3O0G D;  4AKG A;  5ACB A;  3VYG B;  1ENW A;  4EC8 B;  4EOR B;  3QXE B;  3K7A M;  4BCM D;  1JSU B;  4ROE A;  2DPP B;  4F6U B;  2C5O B;  2QGS A;  2DD5 B;  2QFZ A;  4F6S B;  2DXB B;  3WVE B;  2CZ0 B;  1AD6 A;  5EJC A;  2W99 A;  1OKV B;  4CFU B;  3MY5 B;  3QZ5 B;  4EOJ B;  3GTM S;  5EFQ B;  2C4G B;  2ZZD B;  3QYG B;  3H4C A;  3POM A;  1O9K A;  3EJ1 B;  1UGS B;  4BCQ D;  4II5 B;  4NST B;  4Y72 B;  4TTH A;  4BXX X;  2QF7 A;  1UNG D;  1H1S B;  3B57 A;  4M6V A;  1KXU A;  1IRE B;  1F5Q B;  4F7N B;  1OGU B;  3A8L B;  3NDQ A;  1H25 B;  1D3U B;  3MIA B;  3X26 B;  4OB1 B;  4F70 B;  2C5N B;  3QHR B;  4YOS A;  1W98 B;  2IW6 B;  3QWL A;  3TW6 A;  4HNV A;  4JX6 A;  5HBE B;  2X1N B;  1BU2 A;  1E7P A;  2UZE B;  1H24 B;  2DME A;  5DQV A;  4BCO B;  2UZL B;  2ZPF B;  2ZPH B;  2I40 B;  4F7S B;  1URC B;  4EOI B;  1UGR B;  3BG5 A;  4BCP B;  2BPM B;  4EC9 B;  3BG9 A;  1H4L D;  4CXA B;  5HVY B;  1H27 B;  4G6L B;  4FX3 B;  3TW7 A;  2W9F A;  2WHB B;  2KMG A;  4EOK B;  4ELL A;  2IW8 B;  3DJB A;  2BS3 A;  4BCH B;  2BS2 A;  1FKM A;  1GH6 B;  4BCF B;  1O9K B;  4EOL B;  3M03 A;  5HBJ B;  2C5X B;  3BHT B;  5BNJ B;  3HBL A;  1UNH D;  4I3Z B;  2KR6 A;  4BCG B;  3VKG A;  2UUE B;  1TD6 A;  1C9B A;  2QDY B;  3TNW B;  3X24 B;  3BLR B;  1V29 B;  3QYE A;  5IDN B;  1JOW A;  2CZ6 B;  2CJM B;  1H26 B;  5HBH B;  4BCK B;  3HZJ A;  1OL1 B;  4JX5 A;  2WFY B;  2G9X B;  2V22 B;  4IMY B;  5I5Z B;  4BY7 X;  4OB0 B;  2ZPI B;  4LOC A;  2PK9 B;  3A8H B;  3KHI A;  4CFV B;  1QMZ B;  3DTO A;  5LMK B;  2G77 A;  4EOM B;  4BBR M;  3G33 B;  3X28 B;  1UGQ B;  4ROC A;  3EOC B;  3HO8 A;  4CFW B;  3A8G B;  4HLQ A;  2WXV B;  4BCJ B;  5CYI B;  1AHJ B;  1G3N C;  4NC6 A;  3A8M B;  4Z6Y A;  2QDJ A;  3TNI B;  4F7L B;  2CZ7 B;  4BCN D;  4HNU A;  2WJ9 A; 
#chains in the Genus database with same CATH homology
 2DPP B;  3BG9 A;  2DD5 B;  3HHT B;  2QFZ A;  2DXB B;  2ZCF B;  3TW7 A;  3WVE B;  2CZ0 B;  4OB2 B;  2KMG A;  5EJC A;  2ZPB B;  2BS3 A;  2BS2 A;  1FKM A;  3DL1 A;  4MFE A;  4HNT A;  3QZ5 B;  2ZPG B;  4MFD A;  2ZPE B;  2ZZD B;  3QYG B;  3H4C A;  4ZGD B;  3HBL A;  2CYZ B;  2DD4 B;  2KR6 A;  3VKG A;  2QDY B;  1UGS B;  3X24 B;  2AHJ B;  1V29 B;  3QYE A;  4OB3 B;  2CZ6 B;  3BG3 A;  4ELJ A;  4QSH A;  2DXC B;  2QF7 A;  3VYH B;  4AKI A;  1UGP B;  4JX4 A;  3HZJ A;  4FM4 B;  4JX5 A;  3QZ9 B;  3WVD B;  4HL4 A;  4M6V A;  2QQ8 A;  3HB9 A;  1IRE B;  4ZGJ B;  4OB0 B;  2ZPI B;  4LOC A;  3A8H B;  3KHI A;  3A8L B;  4AI6 A;  3A8O B;  2G77 A;  3X26 B;  4AKH A;  3QYH B;  4OB1 B;  4BBR M;  2CZ1 B;  3X28 B;  3VKH A;  4ZGE B;  1UGQ B;  3QYB A;  3HO8 A;  3A8G B;  4HLQ A;  1QLB A;  2D0Q B;  2BS4 A;  3X25 B;  4BBS M;  3X20 B;  3QWL A;  3TW6 A;  4HNV A;  4JX6 A;  1AHJ B;  4MIM A;  1E7P A;  4NC6 A;  3A8M B;  4Z6Y A;  2QDJ A;  4AKG A;  3VYG B;  2ZPF B;  2ZPH B;  3QXE B;  2CZ7 B;  1UGR B;  3BG5 A;  4HNU A;  2WJ9 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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