3VYGB

Crystal structure of thiocyanate hydrolase mutant r136w
Total Genus 42
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
42
sequence length
152
structure length
152
Chain Sequence
SSIREEVHRHLGTVALMQPALHQQTHAPAPTEITHTLFRAYTRVPHDVGGEADVPIEYHEKEEEIWELNTFATCECLAWRGVWTAEERRRKQNCDVGQTVYLGMPYYGRWLLTAARILVDKQFVTLTELHNKIVEMRERVASGQGLGEYLPP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Effects of argnine residue around the substrate pocket on the substrate specificity of thiocyanate hydrolase
rcsb
source organism Thiobacillus thioparus
molecule tags Hydrolase
molecule keywords Thiocyanate hydrolase subunit alpha
total genus 42
structure length 152
sequence length 152
chains with identical sequence E, H, K
ec nomenclature ec 3.5.5.8: Thiocyanate hydrolase.
pdb deposition date 2012-09-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF02211 NHase_beta Nitrile hydratase beta subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.472.20 Mainly Alpha Orthogonal Bundle Cyclin A; domain 1 Cyclin A; domain 1 3vygB00
2AHJB 3QYGB 1UGPB 2QDYB 2ZPGB 3A8GB 3QYHB 3WVDB 1UGQB 3VYHB 2DD4B 2CZ0B 1UGRB 4OB1B 4OB3B 3X25B 1AHJB 2CZ6B 2ZPFB 3X24B 3X26B 4FM4B 2DXBB 2ZPBB 3HHTB 1V29B 3QZ5B 3QZ9B 4OB0B 4ZGEB 2D0QB 2CZ1B 4ZGJB 2DPPB 2ZCFB 3X20B 4OB2B 3X28B 1UGSB 2CZ7B 2ZPIB 1IREB 3VYGB 2CYZB 2ZPHB 3QXEB 3A8MB 3A8HB 2DD5B 3A8LB 2ZZDB 2ZPEB 4ZGDB 3WVEB 3A8OB 2DXCB
chains in the Genus database with same CATH superfamily
1URCB 3BLQB 2W9ZA 2CZ0B 1N4MA 1GY3B 4BCMB 2C6TB 1XO2A 3QHRB 2R7GA 4HL4A 3M03A 4IMYB 2UUEB 3NDQA 2ZPHB 4HNVA 5DQWA 3MI9B 1VOLA 4BCQD 3EIDB 2C5NB 2ZPGB 1QLBA 4EORB 2CCIB 4RODA 4ZGEB 4BY1X 2C4GB 2W9FA 1TFBA 5IHYA 3A8MB 5CEIB 4BXXX 4BCQB 4F7NB 4ELLA 3WVDB 3MIAB 4EOOB 5IDPB 1E7PA 1AHJB 2ZPBB 3POMA 3QZ9B 5L2WB 2EUFA 2BKZB 3B57A 3O0GD 3BHVB 1JKWA 5ICPB 4KRDB 1OGUB 4ZGDB 3WVEB 2UZBB 2QDYB 2W2HA 4F7LB 1UGQB 2G77A 4BCPB 2QQ8A 3X26B 3DDPB 2DXBB 5LMKB 3QZ5B 4OB0B 4HNUA 2QGSA 1IREB 2BPMB 1GUXB 2CYZB 2C5XB 3A8HB 4EC9B 1H28B 1JSUB 3QYBA 4YOZA 4MFEA 2PK2A 4Y72B 3QYHB 4EOKB 1KXUA 3QWLA 3X25B 2KR6A 2I40B 4UN0A 4EOQB 4EOJB 1JSTB 1GH6B 1VYWB 3HO8A 2D0QB 4BCNB 5IDNB 3TN8B 1W98B 1OIYB 2WHBB 3A8LB 4BY7X 2PJQA 4M6VA 1UGPB 4QSHA 5BNJB 2WIPB 4BCHB 4F7SB 3K7AM 4ELJA 4BBRM 4HLQA 1FKMA 4BCND 4KRCB 4ZGJB 3X28B 1UGSB 3VYGB 2QF7A 2JGZB 3GTMS 1H4LD 1UNLD 1TD6A 2ZPEB 2WFYB 3HB9A 3PO3S 1QMZB 2B9RA 4CFNB 1E9HB 4YC3B 1O9KA 2IVXA 2WJ9A 3DDQB 3HZJA 2V22B 1OKWB 3BG5A 2UZEB 2CCHB 3BG9A 2PK9B 2DD5B 4NSTB 1H27B 3DL1A 4EOMB 5HNBB 2W96A 4OB1B 2CZ6B 3X24B 3TNIB 2CZ1B 4MIMA 2QFZA 3DJBA 5IF1B 4OB2B 4BCIB 3QHWB 1C9BA 5I5ZB 4CFUD 2G9XB 4YOSA 1D3UB 4FM4B 5DQVA 4CFXB 1OIUB 4F70B 4Z6YA 4EOLB 3TNHB 4EOSB 1P5EB 2ZZDB 3H4CA 1H1RB 2WMAB 5LQFB 4JX5A 2F2CA 3QYGB 5CYIB 4OB3B 2WMBB 3MY1B 3DTOA 2ZCFB 5HBHB 3QXEB 4CFVB 4JX4A 2WPAB 2BS3A 3HBLA 3BHTB 2DXCB 1OKVB 2LW4A 1FVVB 2BS4A 2WXVB 3BG3A 2UZDB 3BHUB 1H1QB 1V29B 4MFDA 4F6UB 4CFMB 4AKIA 4BBSM 5HQ0B 1UNHD 4BCOB 1H25B 3A8OB 3MY5B 2AHJB 4BCKB 4OR5B 2W99A 4AI6A 2DD4B 4EOIB 5EFQB 2ZPFB 4AKGA 1H1SB 2DPPB 2CZ7B 3TW6A 3QYEA 4NC6A 3BLHB 1ZP2A 4ROCA 2KMGA 1H1PB 3VKHA 4I3ZB 3A8GB 4F6WB 4HNTA 4AKHA 2X1NB 1O9KB 1PKDB 5FGKB 2IW8B 2IN3A 2C5VB 3EOCB 1F5QB 4FX3B 3F5XB 2IW6B 3DOGB 1UGRB 4JX6A 4ROEA 4EOPB 4LOCA 3BLRB 4YOOA 1UNGD 4BCJB 3KHIA 4BCFB 5EJCA 4BCMD 1OL1B 2UZLB 3VKGA 1OL2B 3TNWB 4EC8B 3EJ1B 2CJMB 4CRLB 4BCGB 1H26B 1VINA 4F7JB 5HVYB 2WEVB 2WIHB 5ACBA 1G3NC 1ENWA 4CXAB 2BS2A 4G6LB 1AD6A 3LQ5B 1BU2A 2C5OB 1OI9B 3TW7A 2PMIB 1AISB 4CFWB 5HBEB 2PHGA 4CFUB 1GUXA 1JOWA 3VYHB 2I53A 3HHTB 4TTHA 4EONB 2IW9B 5HBJB 3X20B 2DMEA 4OGRB 4F6SB 3RGFB 2ZPIB 4II5B 3G33B 1H24B 2QDJA 1FINB
chains in the Genus database with same CATH topology
2KMGA 3VKHA 3A8GB 3QYHB 2CZ0B 4HNTA 3QWLA 3X25B 2KR6A 4AKHA 4FM4B 3HO8A 2D0QB 4HL4A 4Z6YA 2ZPHB 3A8LB 2ZZDB 3H4CA 4HNVA 4M6VA 4JX5A 3QYGB 1UGPB 4QSHA 2ZPGB 1UGRB 1QLBA 4JX6A 4OB3B 4ELJA 4BBRM 4HLQA 1FKMA 4LOCA 4ZGEB 4ZGJB 2ZCFB 3KHIA 3X28B 1UGSB 3VYGB 2QF7A 5EJCA 3QXEB 3A8MB 4JX4A 2ZPEB 3VKGA 3HBLA 2BS3A 2DXCB 3HB9A 3WVDB 1E7PA 1AHJB 2BS4A 2WJ9A 3BG3A 2ZPBB 3HZJA 3QZ9B 1V29B 4MFDA 3BG5A 4AKIA 4BBSM 2BS2A 3BG9A 2DD5B 3DL1A 3TW7A 3WVEB 3A8OB 4ZGDB 2AHJB 2QDYB 4AI6A 1UGQB 3VYHB 2DD4B 2G77A 4OB1B 2QQ8A 3X26B 2CZ6B 2ZPFB 3X24B 4AKGA 2DXBB 3HHTB 3QZ5B 4OB0B 4HNUA 2CZ1B 4MIMA 2DPPB 3X20B 2QFZA 4OB2B 2CZ7B 2ZPIB 1IREB 3TW6A 2CYZB 3QYEA 3A8HB 4NC6A 2QDJA 3QYBA 4MFEA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2AHJ B;  3QYG B;  1UGP B;  2QDY B;  2ZPG B;  3A8G B;  3QYH B;  3WVD B;  1UGQ B;  3VYH B;  2DD4 B;  2CZ0 B;  1UGR B;  4OB1 B;  4OB3 B;  3X25 B;  1AHJ B;  2CZ6 B;  2ZPF B;  3X24 B;  3X26 B;  4FM4 B;  2DXB B;  2ZPB B;  3HHT B;  1V29 B;  3QZ5 B;  3QZ9 B;  4OB0 B;  4ZGE B;  2D0Q B;  2CZ1 B;  4ZGJ B;  2DPP B;  2ZCF B;  3X20 B;  4OB2 B;  3X28 B;  1UGS B;  2CZ7 B;  2ZPI B;  1IRE B;  3VYG B;  2CYZ B;  2ZPH B;  3QXE B;  3A8M B;  3A8H B;  2DD5 B;  3A8L B;  2ZZD B;  2ZPE B;  4ZGD B;  3WVE B;  3A8O B;  2DXC B; 
#chains in the Genus database with same CATH topology
 1URC B;  3BLQ B;  2W9Z A;  2CZ0 B;  1N4M A;  1GY3 B;  4BCM B;  2C6T B;  1XO2 A;  3QHR B;  2R7G A;  4HL4 A;  3M03 A;  4IMY B;  2UUE B;  3NDQ A;  2ZPH B;  4HNV A;  5DQW A;  3MI9 B;  1VOL A;  4BCQ D;  3EID B;  2C5N B;  2ZPG B;  1QLB A;  4EOR B;  2CCI B;  4ROD A;  4ZGE B;  4BY1 X;  2C4G B;  2W9F A;  1TFB A;  5IHY A;  3A8M B;  5CEI B;  4BXX X;  4BCQ B;  4F7N B;  4ELL A;  3WVD B;  3MIA B;  4EOO B;  5IDP B;  1E7P A;  1AHJ B;  2ZPB B;  3POM A;  3QZ9 B;  5L2W B;  2EUF A;  2BKZ B;  3B57 A;  3O0G D;  3BHV B;  1JKW A;  5ICP B;  4KRD B;  1OGU B;  4ZGD B;  3WVE B;  2UZB B;  2QDY B;  2W2H A;  4F7L B;  1UGQ B;  2G77 A;  4BCP B;  2QQ8 A;  3X26 B;  3DDP B;  2DXB B;  5LMK B;  3QZ5 B;  4OB0 B;  4HNU A;  2QGS A;  1IRE B;  2BPM B;  1GUX B;  2CYZ B;  2C5X B;  3A8H B;  4EC9 B;  1H28 B;  1JSU B;  3QYB A;  4YOZ A;  4MFE A;  2PK2 A;  4Y72 B;  3QYH B;  4EOK B;  1KXU A;  3QWL A;  3X25 B;  2KR6 A;  2I40 B;  4UN0 A;  4EOQ B;  4EOJ B;  1JST B;  1GH6 B;  1VYW B;  3HO8 A;  2D0Q B;  4BCN B;  5IDN B;  3TN8 B;  1W98 B;  1OIY B;  2WHB B;  3A8L B;  4BY7 X;  2PJQ A;  4M6V A;  1UGP B;  4QSH A;  5BNJ B;  2WIP B;  4BCH B;  4F7S B;  3K7A M;  4ELJ A;  4BBR M;  4HLQ A;  1FKM A;  4BCN D;  4KRC B;  4ZGJ B;  3X28 B;  1UGS B;  3VYG B;  2QF7 A;  2JGZ B;  3GTM S;  1H4L D;  1UNL D;  1TD6 A;  2ZPE B;  2WFY B;  3HB9 A;  3PO3 S;  1QMZ B;  2B9R A;  4CFN B;  1E9H B;  4YC3 B;  1O9K A;  2IVX A;  2WJ9 A;  3DDQ B;  3HZJ A;  2V22 B;  1OKW B;  3BG5 A;  2UZE B;  2CCH B;  3BG9 A;  2PK9 B;  2DD5 B;  4NST B;  1H27 B;  3DL1 A;  4EOM B;  5HNB B;  2W96 A;  4OB1 B;  2CZ6 B;  3X24 B;  3TNI B;  2CZ1 B;  4MIM A;  2QFZ A;  3DJB A;  5IF1 B;  4OB2 B;  4BCI B;  3QHW B;  1C9B A;  5I5Z B;  4CFU D;  2G9X B;  4YOS A;  1D3U B;  4FM4 B;  5DQV A;  4CFX B;  1OIU B;  4F70 B;  4Z6Y A;  4EOL B;  3TNH B;  4EOS B;  1P5E B;  2ZZD B;  3H4C A;  1H1R B;  2WMA B;  5LQF B;  4JX5 A;  2F2C A;  3QYG B;  5CYI B;  4OB3 B;  2WMB B;  3MY1 B;  3DTO A;  2ZCF B;  5HBH B;  3QXE B;  4CFV B;  4JX4 A;  2WPA B;  2BS3 A;  3HBL A;  3BHT B;  2DXC B;  1OKV B;  2LW4 A;  1FVV B;  2BS4 A;  2WXV B;  3BG3 A;  2UZD B;  3BHU B;  1H1Q B;  1V29 B;  4MFD A;  4F6U B;  4CFM B;  4AKI A;  4BBS M;  5HQ0 B;  1UNH D;  4BCO B;  1H25 B;  3A8O B;  3MY5 B;  2AHJ B;  4BCK B;  4OR5 B;  2W99 A;  4AI6 A;  2DD4 B;  4EOI B;  5EFQ B;  2ZPF B;  4AKG A;  1H1S B;  2DPP B;  2CZ7 B;  3TW6 A;  3QYE A;  4NC6 A;  3BLH B;  1ZP2 A;  4ROC A;  2KMG A;  1H1P B;  3VKH A;  4I3Z B;  3A8G B;  4F6W B;  4HNT A;  4AKH A;  2X1N B;  1O9K B;  1PKD B;  5FGK B;  2IW8 B;  2IN3 A;  2C5V B;  3EOC B;  1F5Q B;  4FX3 B;  3F5X B;  2IW6 B;  3DOG B;  1UGR B;  4JX6 A;  4ROE A;  4EOP B;  4LOC A;  3BLR B;  4YOO A;  1UNG D;  4BCJ B;  3KHI A;  4BCF B;  5EJC A;  4BCM D;  1OL1 B;  2UZL B;  3VKG A;  1OL2 B;  3TNW B;  4EC8 B;  3EJ1 B;  2CJM B;  4CRL B;  4BCG B;  1H26 B;  1VIN A;  4F7J B;  5HVY B;  2WEV B;  2WIH B;  5ACB A;  1G3N C;  1ENW A;  4CXA B;  2BS2 A;  4G6L B;  1AD6 A;  3LQ5 B;  1BU2 A;  2C5O B;  1OI9 B;  3TW7 A;  2PMI B;  1AIS B;  4CFW B;  5HBE B;  2PHG A;  4CFU B;  1GUX A;  1JOW A;  3VYH B;  2I53 A;  3HHT B;  4TTH A;  4EON B;  2IW9 B;  5HBJ B;  3X20 B;  2DME A;  4OGR B;  4F6S B;  3RGF B;  2ZPI B;  4II5 B;  3G33 B;  1H24 B;  2QDJ A;  1FIN B; 
#chains in the Genus database with same CATH homology
 2KMG A;  3VKH A;  3A8G B;  3QYH B;  2CZ0 B;  4HNT A;  3QWL A;  3X25 B;  2KR6 A;  4AKH A;  4FM4 B;  3HO8 A;  2D0Q B;  4HL4 A;  4Z6Y A;  2ZPH B;  3A8L B;  2ZZD B;  3H4C A;  4HNV A;  4M6V A;  4JX5 A;  3QYG B;  1UGP B;  4QSH A;  2ZPG B;  1UGR B;  1QLB A;  4JX6 A;  4OB3 B;  4ELJ A;  4BBR M;  4HLQ A;  1FKM A;  4LOC A;  4ZGE B;  4ZGJ B;  2ZCF B;  3KHI A;  3X28 B;  1UGS B;  3VYG B;  2QF7 A;  5EJC A;  3QXE B;  3A8M B;  4JX4 A;  2ZPE B;  3VKG A;  3HBL A;  2BS3 A;  2DXC B;  3HB9 A;  3WVD B;  1E7P A;  1AHJ B;  2BS4 A;  2WJ9 A;  3BG3 A;  2ZPB B;  3HZJ A;  3QZ9 B;  1V29 B;  4MFD A;  3BG5 A;  4AKI A;  4BBS M;  2BS2 A;  3BG9 A;  2DD5 B;  3DL1 A;  3TW7 A;  3WVE B;  3A8O B;  4ZGD B;  2AHJ B;  2QDY B;  4AI6 A;  1UGQ B;  3VYH B;  2DD4 B;  2G77 A;  4OB1 B;  2QQ8 A;  3X26 B;  2CZ6 B;  2ZPF B;  3X24 B;  4AKG A;  2DXB B;  3HHT B;  3QZ5 B;  4OB0 B;  4HNU A;  2CZ1 B;  4MIM A;  2DPP B;  3X20 B;  2QFZ A;  4OB2 B;  2CZ7 B;  2ZPI B;  1IRE B;  3TW6 A;  2CYZ B;  3QYE A;  3A8H B;  4NC6 A;  2QDJ A;  3QYB A;  4MFE A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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