3VYGB

Crystal structure of thiocyanate hydrolase mutant r136w
Total Genus 42
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
42
sequence length
152
structure length
152
Chain Sequence
b'SSIREEVHRHLGTVALMQPALHQQTHAPAPTEITHTLFRAYTRVPHDVGGEADVPIEYHEKEEEIWELNTFATCECLAWRGVWTAEERRRKQNCDVGQTVYLGMPYYGRWLLTAARILVDKQFVTLTELHNKIVEMRERVASGQGLGEYLPP'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Thiocyanate hydrolase subunit alpha
publication title Effects of argnine residue around the substrate pocket on the substrate specificity of thiocyanate hydrolase
rcsb
source organism Thiobacillus thioparus
molecule tags Hydrolase
total genus 42
structure length 152
sequence length 152
chains with identical sequence E, H, K
ec nomenclature ec 3.5.5.8: Thiocyanate hydrolase.
pdb deposition date 2012-09-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF02211 NHase_beta Nitrile hydratase beta subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.472.20 Mainly Alpha Orthogonal Bundle Cyclin A; domain 1 Cyclin A; domain 1 3vygB00
2CZ1B 3VYGB 2DXBB 4OB0B 3WVDB 2AHJB 1V29B 2DPPB 2ZPGB 2ZZDB 2ZPBB 4OB3B 1UGPB 2D0QB 2CZ7B 2ZPFB 3A8HB 4ZGDB 3QZ9B 2DXCB 3QXEB 2DD4B 3X25B 2ZPIB 4OB2B 4ZGEB 3X20B 2CZ6B 4ZGJB 3X28B 3QZ5B 2QDYB 1UGSB 3X26B 2DD5B 3WVEB 3HHTB 3A8MB 2ZPEB 4OB1B 2CYZB 3A8LB 1UGRB 2ZCFB 2ZPHB 2CZ0B 1IREB 3QYHB 3A8OB 1UGQB 1AHJB 3A8GB 4FM4B 3X24B 3VYHB 3QYGB
chains in the Genus database with same CATH superfamily
5HBJB 4G6LB 5IF1B 1AISB 5CEIB 1OL2B 3EOCB 4LOCA 3X26B 3H4CA 1E7PA 1GH6B 2IN3A 3BLQB 3PO3S 3QYHB 1XO2A 4RODA 1AHJB 3A8GB 3X24B 2W99A 2BS2A 4BCND 1GUXA 4YOSA 4AKHA 2WMAB 1QLBA 2ZZDB 3TN8B 3QXEB 2DD4B 1D3UB 4BCMD 3X20B 3X28B 1UGSB 3DDQB 2DD5B 2QDJA 3BLHB 1GUXB 1JOWA 4NSTB 1W98B 1URCB 4JX5A 3TNIB 5HQ0B 4BCKB 3GTMS 3DDPB 4ZGEB 4YOOA 5ACBA 4CFUB 4YC3B 3BHTB 3BHVB 4AKIA 4F6WB 5BNJB 4EORB 3A8LB 5ICPB 4CFVB 4NC6A 3RGFB 2WEVB 2CCIB 4EOKB 4CFWB 3BG3A 3VKHA 2I40B 2PK2A 3KHIA 5LMKB 4F6SB 1O9KA 1H1RB 1PKDB 1TD6A 1UGPB 4ZGDB 5HBHB 4Y72B 5HNBB 4BCFB 4UN0A 2CZ6B 5IDNB 4EC9B 5HVYB 4F7NB 4OGRB 5LQFB 2W9ZA 1H28B 4IMYB 3NDQA 1UGRB 2ZCFB 2BS3A 1UNHD 2DMEA 4ROEA 2LW4A 1G3NC 4EOJB 4BBSM 1ZP2A 2ZPGB 1E9HB 4OB3B 1VYWB 2C5VB 2ZPFB 3QHRB 4EC8B 2BS4A 4CFXB 4EOIB 4EONB 3TNWB 2QF7A 4OR5B 4HNUA 3TW7A 2ZPEB 2IW6B 2WIHB 3MIAB 2R7GA 5EFQB 4BXXX 3QYGB 3VKGA 1H1QB 4MFEA 2PJQA 4OB2B 3O0GD 1H24B 4EOOB 4ROCA 4F7JB 2W2HA 2ZPHB 4YOZA 2KR6A 4BCPB 2CJMB 4MIMA 2IW9B 1BU2A 2CZ7B 3BLRB 2WHBB 2IW8B 4BCQD 4BCJB 3BHUB 4HL4A 4F7LB 3MY1B 1FINB 4EOLB 3EJ1B 4JX6A 1UNGD 4AI6A 2I53A 4BCNB 2WIPB 4HNVA 5L2WB 4EOPB 3BG5A 3WVDB 4M6VA 2C4GB 3X25B 4BCMB 4F6UB 5CYIB 2G9XB 3POMA 3MI9B 4BY7X 2WFYB 3EIDB 4HLQA 4OB1B 4ELLA 4BCHB 2UZBB 2C5OB 5DQWA 2ZPBB 2JGZB 3A8HB 4ZGJB 1O9KB 3DL1A 4EOSB 4II5B 1H27B 1TFBA 1KXUA 1OIUB 2DXBB 2BPMB 4OB0B 5HBEB 2IVXA 2WXVB 5IHYA 1VINA 2W96A 2QDYB 2WJ9A 4F70B 3WVEB 3HHTB 4FX3B 3A8MB 2UZEB 4I3ZB 1N4MA 4KRCB 2G77A 4EOQB 4EOMB 3HO8A 2WPAB 4BCGB 2B9RA 1OKWB 4HNTA 5FGKB 4BCIB 4CFUD 1H1SB 4Z6YA 1FKMA 1UNLD 5EJCA 5DQVA 3M03A 1GY3B 4CRLB 1IREB 4FM4B 3A8OB 1JKWA 3VYHB 2CZ1B 2EUFA 2UZDB 3HZJA 3G33B 1C9BA 2AHJB 2DPPB 4BY1X 2D0QB 4JX4A 2QFZA 2CCHB 2PHGA 1AD6A 3MY5B 4TTHA 3BG9A 1OKVB 3HB9A 3TNHB 4F7SB 3QYBA 1JSUB 1UGQB 1ENWA 2UZLB 4CXAB 3F5XB 2WMBB 2V22B 1V29B 1H26B 2F2CA 1F5QB 3QZ9B 4ELJA 2C5XB 2PMIB 3DTOA 2C6TB 1H25B 2W9FA 2BKZB 2QGSA 3TW6A 1QMZB 3DOGB 3QHWB 4KRDB 1OIYB 3B57A 2ZPIB 4BCQB 2X1NB 4CFMB 3QZ5B 1OL1B 3HBLA 4AKGA 3DJBA 2CYZB 2CZ0B 3QYEA 4BCOB 3QWLA 1VOLA 1FVVB 1P5EB 2QQ8A 3VYGB 2C5NB 4CFNB 2KMGA 2DXCB 4MFDA 5IDPB 3K7AM 1OI9B 1H1PB 2PK9B 4QSHA 2UUEB 3LQ5B 1JSTB 1OGUB 1H4LD 4BBRM 5I5ZB
chains in the Genus database with same CATH topology
2CZ1B 3HZJA 4HNVA 3BG5A 3WVDB 2AHJB 2DPPB 4M6VA 1UGPB 2D0QB 4JX4A 4ZGDB 2QFZA 3X25B 2CZ6B 4LOCA 3BG9A 3X26B 3HB9A 3H4CA 4HLQA 4OB1B 1E7PA 1UGRB 2ZCFB 2BS3A 3QYBA 3QYHB 1UGQB 1AHJB 3A8GB 3X24B 2BS2A 4BBSM 4AKHA 1QLBA 1V29B 2ZPGB 2ZZDB 2ZPBB 4OB3B 2ZPFB 3A8HB 3QZ9B 3QXEB 2DD4B 4ELJA 2BS4A 3X20B 4ZGJB 2QF7A 3X28B 3DL1A 1UGSB 4HNUA 2DD5B 2QDJA 3TW7A 2ZPEB 4JX5A 3QYGB 4ZGEB 3VKGA 2DXBB 4OB0B 3TW6A 4MFEA 2ZPIB 4OB2B 3QZ5B 4AKIA 2QDYB 2WJ9A 3WVEB 3HHTB 3HBLA 3A8MB 4AKGA 2CYZB 3A8LB 2ZPHB 2CZ0B 3QYEA 2KR6A 3QWLA 2G77A 4MIMA 2QQ8A 3HO8A 4NC6A 3VYGB 4HNTA 2CZ7B 2KMGA 2DXCB 4Z6YA 3BG3A 3VKHA 1FKMA 3KHIA 4HL4A 4MFDA 5EJCA 4JX6A 4QSHA 4FM4B 1IREB 3A8OB 4BBRM 3VYHB 4AI6A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2CZ1 B;  3VYG B;  2DXB B;  4OB0 B;  3WVD B;  2AHJ B;  1V29 B;  2DPP B;  2ZPG B;  2ZZD B;  2ZPB B;  4OB3 B;  1UGP B;  2D0Q B;  2CZ7 B;  2ZPF B;  3A8H B;  4ZGD B;  3QZ9 B;  2DXC B;  3QXE B;  2DD4 B;  3X25 B;  2ZPI B;  4OB2 B;  4ZGE B;  3X20 B;  2CZ6 B;  4ZGJ B;  3X28 B;  3QZ5 B;  2QDY B;  1UGS B;  3X26 B;  2DD5 B;  3WVE B;  3HHT B;  3A8M B;  2ZPE B;  4OB1 B;  2CYZ B;  3A8L B;  1UGR B;  2ZCF B;  2ZPH B;  2CZ0 B;  1IRE B;  3QYH B;  3A8O B;  1UGQ B;  1AHJ B;  3A8G B;  4FM4 B;  3X24 B;  3VYH B;  3QYG B; 
#chains in the Genus database with same CATH topology
 5HBJ B;  4G6L B;  5IF1 B;  1AIS B;  5CEI B;  1OL2 B;  3EOC B;  4LOC A;  3X26 B;  3H4C A;  1E7P A;  1GH6 B;  2IN3 A;  3BLQ B;  3PO3 S;  3QYH B;  1XO2 A;  4ROD A;  1AHJ B;  3A8G B;  3X24 B;  2W99 A;  2BS2 A;  4BCN D;  1GUX A;  4YOS A;  4AKH A;  2WMA B;  1QLB A;  2ZZD B;  3TN8 B;  3QXE B;  2DD4 B;  1D3U B;  4BCM D;  3X20 B;  3X28 B;  1UGS B;  3DDQ B;  2DD5 B;  2QDJ A;  3BLH B;  1GUX B;  1JOW A;  4NST B;  1W98 B;  1URC B;  4JX5 A;  3TNI B;  5HQ0 B;  4BCK B;  3GTM S;  3DDP B;  4ZGE B;  4YOO A;  5ACB A;  4CFU B;  4YC3 B;  3BHT B;  3BHV B;  4AKI A;  4F6W B;  5BNJ B;  4EOR B;  3A8L B;  5ICP B;  4CFV B;  4NC6 A;  3RGF B;  2WEV B;  2CCI B;  4EOK B;  4CFW B;  3BG3 A;  3VKH A;  2I40 B;  2PK2 A;  3KHI A;  5LMK B;  4F6S B;  1O9K A;  1H1R B;  1PKD B;  1TD6 A;  1UGP B;  4ZGD B;  5HBH B;  4Y72 B;  5HNB B;  4BCF B;  4UN0 A;  2CZ6 B;  5IDN B;  4EC9 B;  5HVY B;  4F7N B;  4OGR B;  5LQF B;  2W9Z A;  1H28 B;  4IMY B;  3NDQ A;  1UGR B;  2ZCF B;  2BS3 A;  1UNH D;  2DME A;  4ROE A;  2LW4 A;  1G3N C;  4EOJ B;  4BBS M;  1ZP2 A;  2ZPG B;  1E9H B;  4OB3 B;  1VYW B;  2C5V B;  2ZPF B;  3QHR B;  4EC8 B;  2BS4 A;  4CFX B;  4EOI B;  4EON B;  3TNW B;  2QF7 A;  4OR5 B;  4HNU A;  3TW7 A;  2ZPE B;  2IW6 B;  2WIH B;  3MIA B;  2R7G A;  5EFQ B;  4BXX X;  3QYG B;  3VKG A;  1H1Q B;  4MFE A;  2PJQ A;  4OB2 B;  3O0G D;  1H24 B;  4EOO B;  4ROC A;  4F7J B;  2W2H A;  2ZPH B;  4YOZ A;  2KR6 A;  4BCP B;  2CJM B;  4MIM A;  2IW9 B;  1BU2 A;  2CZ7 B;  3BLR B;  2WHB B;  2IW8 B;  4BCQ D;  4BCJ B;  3BHU B;  4HL4 A;  4F7L B;  3MY1 B;  1FIN B;  4EOL B;  3EJ1 B;  4JX6 A;  1UNG D;  4AI6 A;  2I53 A;  4BCN B;  2WIP B;  4HNV A;  5L2W B;  4EOP B;  3BG5 A;  3WVD B;  4M6V A;  2C4G B;  3X25 B;  4BCM B;  4F6U B;  5CYI B;  2G9X B;  3POM A;  3MI9 B;  4BY7 X;  2WFY B;  3EID B;  4HLQ A;  4OB1 B;  4ELL A;  4BCH B;  2UZB B;  2C5O B;  5DQW A;  2ZPB B;  2JGZ B;  3A8H B;  4ZGJ B;  1O9K B;  3DL1 A;  4EOS B;  4II5 B;  1H27 B;  1TFB A;  1KXU A;  1OIU B;  2DXB B;  2BPM B;  4OB0 B;  5HBE B;  2IVX A;  2WXV B;  5IHY A;  1VIN A;  2W96 A;  2QDY B;  2WJ9 A;  4F70 B;  3WVE B;  3HHT B;  4FX3 B;  3A8M B;  2UZE B;  4I3Z B;  1N4M A;  4KRC B;  2G77 A;  4EOQ B;  4EOM B;  3HO8 A;  2WPA B;  4BCG B;  2B9R A;  1OKW B;  4HNT A;  5FGK B;  4BCI B;  4CFU D;  1H1S B;  4Z6Y A;  1FKM A;  1UNL D;  5EJC A;  5DQV A;  3M03 A;  1GY3 B;  4CRL B;  1IRE B;  4FM4 B;  3A8O B;  1JKW A;  3VYH B;  2CZ1 B;  2EUF A;  2UZD B;  3HZJ A;  3G33 B;  1C9B A;  2AHJ B;  2DPP B;  4BY1 X;  2D0Q B;  4JX4 A;  2QFZ A;  2CCH B;  2PHG A;  1AD6 A;  3MY5 B;  4TTH A;  3BG9 A;  1OKV B;  3HB9 A;  3TNH B;  4F7S B;  3QYB A;  1JSU B;  1UGQ B;  1ENW A;  2UZL B;  4CXA B;  3F5X B;  2WMB B;  2V22 B;  1V29 B;  1H26 B;  2F2C A;  1F5Q B;  3QZ9 B;  4ELJ A;  2C5X B;  2PMI B;  3DTO A;  2C6T B;  1H25 B;  2W9F A;  2BKZ B;  2QGS A;  3TW6 A;  1QMZ B;  3DOG B;  3QHW B;  4KRD B;  1OIY B;  3B57 A;  2ZPI B;  4BCQ B;  2X1N B;  4CFM B;  3QZ5 B;  1OL1 B;  3HBL A;  4AKG A;  3DJB A;  2CYZ B;  2CZ0 B;  3QYE A;  4BCO B;  3QWL A;  1VOL A;  1FVV B;  1P5E B;  2QQ8 A;  3VYG B;  2C5N B;  4CFN B;  2KMG A;  2DXC B;  4MFD A;  5IDP B;  3K7A M;  1OI9 B;  1H1P B;  2PK9 B;  4QSH A;  2UUE B;  3LQ5 B;  1JST B;  1OGU B;  1H4L D;  4BBR M;  5I5Z B; 
#chains in the Genus database with same CATH homology
 2CZ1 B;  3HZJ A;  4HNV A;  3BG5 A;  3WVD B;  2AHJ B;  2DPP B;  4M6V A;  1UGP B;  2D0Q B;  4JX4 A;  4ZGD B;  2QFZ A;  3X25 B;  2CZ6 B;  4LOC A;  3BG9 A;  3X26 B;  3HB9 A;  3H4C A;  4HLQ A;  4OB1 B;  1E7P A;  1UGR B;  2ZCF B;  2BS3 A;  3QYB A;  3QYH B;  1UGQ B;  1AHJ B;  3A8G B;  3X24 B;  2BS2 A;  4BBS M;  4AKH A;  1QLB A;  1V29 B;  2ZPG B;  2ZZD B;  2ZPB B;  4OB3 B;  2ZPF B;  3A8H B;  3QZ9 B;  3QXE B;  2DD4 B;  4ELJ A;  2BS4 A;  3X20 B;  4ZGJ B;  2QF7 A;  3X28 B;  3DL1 A;  1UGS B;  4HNU A;  2DD5 B;  2QDJ A;  3TW7 A;  2ZPE B;  4JX5 A;  3QYG B;  4ZGE B;  3VKG A;  2DXB B;  4OB0 B;  3TW6 A;  4MFE A;  2ZPI B;  4OB2 B;  3QZ5 B;  4AKI A;  2QDY B;  2WJ9 A;  3WVE B;  3HHT B;  3HBL A;  3A8M B;  4AKG A;  2CYZ B;  3A8L B;  2ZPH B;  2CZ0 B;  3QYE A;  2KR6 A;  3QWL A;  2G77 A;  4MIM A;  2QQ8 A;  3HO8 A;  4NC6 A;  3VYG B;  4HNT A;  2CZ7 B;  2KMG A;  2DXC B;  4Z6Y A;  3BG3 A;  3VKH A;  1FKM A;  3KHI A;  4HL4 A;  4MFD A;  5EJC A;  4JX6 A;  4QSH A;  4FM4 B;  1IRE B;  3A8O B;  4BBR M;  3VYH B;  4AI6 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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