3VYGB

Crystal structure of thiocyanate hydrolase mutant r136w
Total Genus 42
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
42
sequence length
152
structure length
152
Chain Sequence
SSIREEVHRHLGTVALMQPALHQQTHAPAPTEITHTLFRAYTRVPHDVGGEADVPIEYHEKEEEIWELNTFATCECLAWRGVWTAEERRRKQNCDVGQTVYLGMPYYGRWLLTAARILVDKQFVTLTELHNKIVEMRERVASGQGLGEYLPP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Thiocyanate hydrolase subunit alpha
publication title Effects of argnine residue around the substrate pocket on the substrate specificity of thiocyanate hydrolase
rcsb
source organism Thiobacillus thioparus
total genus 42
structure length 152
sequence length 152
chains with identical sequence E, H, K
ec nomenclature ec 3.5.5.8: Thiocyanate hydrolase.
pdb deposition date 2012-09-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF02211 NHase_beta Nitrile hydratase beta subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.472.20 Mainly Alpha Orthogonal Bundle Cyclin A; domain 1 Cyclin A; domain 1 3vygB00
1UGPB 2DXCB 1AHJB 2ZPBB 4ZGEB 2ZCFB 2CYZB 3X25B 2ZZDB 3A8HB 2QDYB 4OB0B 2CZ7B 2D0QB 3A8GB 3QYGB 2ZPGB 1UGQB 1IREB 4ZGJB 3X28B 4ZGDB 1UGRB 4OB3B 4FM4B 3WVEB 3QZ9B 1V29B 1UGSB 3A8OB 3VYGB 4OB2B 2ZPHB 3X26B 2DD4B 2DD5B 3WVDB 4OB1B 2CZ6B 2ZPEB 2CZ1B 2ZPFB 3HHTB 2DPPB 3QXEB 3VYHB 3QZ5B 2AHJB 3X24B 3A8LB 2DXBB 2CZ0B 3A8MB 2ZPIB 3QYHB 3X20B
chains in the Genus database with same CATH superfamily
2CCHB 3BHUB 4BBRM 4OB0B 4RODA 1JSTB 2I53A 2IVXA 3QYEA 3M03A 3A8OB 1H25B 1O9KA 2WIHB 4TTHA 2PHGA 4OB1B 5HBHB 5IHYA 3QYBA 2BS2A 3A8MB 4EC8B 1GY3B 3H4CA 5CYIB 4ROEA 1IREB 1C9BA 3RGFB 4BCHB 4EOKB 2QFZA 1W98B 1OL1B 2UZBB 4HNTA 3B57A 2JGZB 2ZCFB 1OIUB 2PJQA 1ENWA 1O9KB 4CFMB 4HNVA 4AKHA 3VKHA 1F5QB 3BHTB 1V29B 4I3ZB 1H4LD 4BCQD 2QGSA 3HHTB 4EONB 3QZ5B 1JSUB 3A8LB 2BS4A 2ZPIB 2CCIB 3O0GD 2KR6A 2EUFA 2W99A 4BCKB 4OR5B 4BY7X 2PK9B 1UGQB 1FVVB 4CFNB 4ZGJB 3TN8B 2C5NB 3X26B 1GH6B 2DD5B 2DD4B 4BCJB 4G6LB 1OI9B 4BY1X 4ELLA 2IW9B 3MY1B 5BNJB 3GTMS 1UNHD 2D0QB 4HL4A 4BXXX 2W9ZA 3DL1A 4BCND 1FKMA 1H26B 4BCGB 3MY5B 5DQWA 3VYGB 4F70B 3LQ5B 3KHIA 2ZPEB 3EIDB 4F6SB 2WMAB 4F6UB 2C5XB 1AHJB 4EOMB 3A8GB 4Z6YA 4CFUD 2IW8B 4BCMD 1H1RB 1UGSB 1XO2A 1OKWB 4QSHA 1TFBA 3QXEB 3TNWB 1PKDB 4EOLB 4EOSB 4EC9B 5I5ZB 5L2WB 4CFWB 2UZEB 3QYGB 2W96A 4KRDB 2WFYB 5IDPB 1UNLD 4KRCB 1OL2B 2WXVB 1P5EB 2CZ0B 2C5OB 1URCB 2X1NB 1UNGD 3QHRB 5IF1B 3TNHB 3TW7A 3EOCB 2C6TB 3K7AM 4YOSA 1VINA 2ZPGB 5EFQB 4F7NB 3HBLA 1JOWA 3DJBA 3QHWB 4OGRB 1E7PA 4NSTB 3POMA 2WIPB 2DPPB 4AKGA 2AHJB 4BCNB 2I40B 2BPMB 1OKVB 3DDQB 2DXCB 5ICPB 2CYZB 4BBSM 1VOLA 4ROCA 5DQVA 2R7GA 3X28B 2V22B 4F7SB 2ZPHB 2C5VB 4MFEA 2G77A 2ZPFB 2G9XB 2QDJA 4BCMB 2IW6B 4EORB 1UGPB 4CRLB 3A8HB 3G33B 3HZJA 3BLRB 2WPAB 3EJ1B 4BCFB 1E9HB 1VYWB 3DDPB 5CEIB 4CFXB 2DXBB 4ZGEB 1H1PB 4HLQA 3X25B 1GUXA 2LW4A 3QWLA 2QF7A 5ACBA 3BLHB 1UGRB 1KXUA 3QZ9B 4IMYB 3DOGB 2CZ6B 2WJ9A 2WMBB 3QYHB 1FINB 2UZDB 4BCQB 4F7LB 3HO8A 1AISB 3WVEB 4FX3B 4M6VA 1JKWA 2PK2A 5HBJB 4CFVB 1TD6A 4JX4A 1H24B 4BCIB 1GUXB 4MFDA 2CJMB 1N4MA 4EOOB 1G3NC 4HNUA 4BCPB 1OGUB 4AKIA 2IN3A 2BKZB 4OB3B 1H27B 1ZP2A 3BG9A 3NDQA 4EOIB 1QLBA 1BU2A 2BS3A 2WEVB 4NC6A 2CZ1B 4EOPB 2F2CA 4LOCA 4YOZA 2C4GB 4JX6A 4YOOA 2CZ7B 3DTOA 4F7JB 5HBEB 2B9RA 2W2HA 5HNBB 4ELJA 3VKGA 3PO3S 4Y72B 4CFUB 2UUEB 3X20B 5EJCA 2DMEA 2ZZDB 2QDYB 3BLQB 3MI9B 3TW6A 4II5B 4CXAB 4ZGDB 3BG3A 1OIYB 4FM4B 4MIMA 2PMIB 5HQ0B 4F6WB 4BCOB 3BHVB 3TNIB 5HVYB 4JX5A 1H28B 3VYHB 3X24B 3MIAB 2W9FA 3F5XB 2ZPBB 1D3UB 2UZLB 5LQFB 3HB9A 5FGKB 4YC3B 1H1QB 5LMKB 4AI6A 4EOQB 4EOJB 2QQ8A 4OB2B 3WVDB 1AD6A 2WHBB 1H1SB 3BG5A 5IDNB 2KMGA 1QMZB 4UN0A
chains in the Genus database with same CATH topology
2DXCB 4HNUA 2CYZB 4BBRM 4BBSM 4OB0B 4AKIA 2D0QB 4HL4A 3DL1A 3X28B 1FKMA 3QYEA 4OB3B 3BG9A 3A8OB 3VYGB 2ZPHB 1QLBA 2BS3A 3KHIA 4NC6A 4OB1B 2ZPEB 4MFEA 2CZ1B 2G77A 2ZPFB 3QYBA 2BS2A 2QDJA 3A8MB 4LOCA 1UGPB 1AHJB 4JX6A 3H4CA 3A8HB 2CZ7B 3HZJA 3A8GB 4Z6YA 1IREB 1UGSB 4ELJA 3VKGA 2QFZA 4QSHA 3QXEB 4HNTA 2DXBB 4ZGEB 3X20B 4HLQA 5EJCA 2ZCFB 3X25B 2ZZDB 2QDYB 3QWLA 2QF7A 3QYGB 3TW6A 4HNVA 4AKHA 4ZGDB 3VKHA 1UGRB 3BG3A 4FM4B 3QZ9B 1V29B 4MIMA 2CZ6B 2WJ9A 3HHTB 4JX5A 3VYHB 3QZ5B 3X24B 3A8LB 2BS4A 2CZ0B 2ZPIB 3QYHB 2KR6A 3TW7A 2ZPBB 3HB9A 2ZPGB 3HBLA 1UGQB 4AI6A 3HO8A 4ZGJB 3WVEB 2QQ8A 4M6VA 4OB2B 3X26B 2DD4B 2DD5B 3WVDB 4JX4A 1E7PA 2DPPB 4AKGA 3BG5A 4MFDA 2KMGA 2AHJB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1UGP B;  2DXC B;  1AHJ B;  2ZPB B;  4ZGE B;  2ZCF B;  2CYZ B;  3X25 B;  2ZZD B;  3A8H B;  2QDY B;  4OB0 B;  2CZ7 B;  2D0Q B;  3A8G B;  3QYG B;  2ZPG B;  1UGQ B;  1IRE B;  4ZGJ B;  3X28 B;  4ZGD B;  1UGR B;  4OB3 B;  4FM4 B;  3WVE B;  3QZ9 B;  1V29 B;  1UGS B;  3A8O B;  3VYG B;  4OB2 B;  2ZPH B;  3X26 B;  2DD4 B;  2DD5 B;  3WVD B;  4OB1 B;  2CZ6 B;  2ZPE B;  2CZ1 B;  2ZPF B;  3HHT B;  2DPP B;  3QXE B;  3VYH B;  3QZ5 B;  2AHJ B;  3X24 B;  3A8L B;  2DXB B;  2CZ0 B;  3A8M B;  2ZPI B;  3QYH B;  3X20 B; 
#chains in the Genus database with same CATH topology
 2CCH B;  3BHU B;  4BBR M;  4OB0 B;  4ROD A;  1JST B;  2I53 A;  2IVX A;  3QYE A;  3M03 A;  3A8O B;  1H25 B;  1O9K A;  2WIH B;  4TTH A;  2PHG A;  4OB1 B;  5HBH B;  5IHY A;  3QYB A;  2BS2 A;  3A8M B;  4EC8 B;  1GY3 B;  3H4C A;  5CYI B;  4ROE A;  1IRE B;  1C9B A;  3RGF B;  4BCH B;  4EOK B;  2QFZ A;  1W98 B;  1OL1 B;  2UZB B;  4HNT A;  3B57 A;  2JGZ B;  2ZCF B;  1OIU B;  2PJQ A;  1ENW A;  1O9K B;  4CFM B;  4HNV A;  4AKH A;  3VKH A;  1F5Q B;  3BHT B;  1V29 B;  4I3Z B;  1H4L D;  4BCQ D;  2QGS A;  3HHT B;  4EON B;  3QZ5 B;  1JSU B;  3A8L B;  2BS4 A;  2ZPI B;  2CCI B;  3O0G D;  2KR6 A;  2EUF A;  2W99 A;  4BCK B;  4OR5 B;  4BY7 X;  2PK9 B;  1UGQ B;  1FVV B;  4CFN B;  4ZGJ B;  3TN8 B;  2C5N B;  3X26 B;  1GH6 B;  2DD5 B;  2DD4 B;  4BCJ B;  4G6L B;  1OI9 B;  4BY1 X;  4ELL A;  2IW9 B;  3MY1 B;  5BNJ B;  3GTM S;  1UNH D;  2D0Q B;  4HL4 A;  4BXX X;  2W9Z A;  3DL1 A;  4BCN D;  1FKM A;  1H26 B;  4BCG B;  3MY5 B;  5DQW A;  3VYG B;  4F70 B;  3LQ5 B;  3KHI A;  2ZPE B;  3EID B;  4F6S B;  2WMA B;  4F6U B;  2C5X B;  1AHJ B;  4EOM B;  3A8G B;  4Z6Y A;  4CFU D;  2IW8 B;  4BCM D;  1H1R B;  1UGS B;  1XO2 A;  1OKW B;  4QSH A;  1TFB A;  3QXE B;  3TNW B;  1PKD B;  4EOL B;  4EOS B;  4EC9 B;  5I5Z B;  5L2W B;  4CFW B;  2UZE B;  3QYG B;  2W96 A;  4KRD B;  2WFY B;  5IDP B;  1UNL D;  4KRC B;  1OL2 B;  2WXV B;  1P5E B;  2CZ0 B;  2C5O B;  1URC B;  2X1N B;  1UNG D;  3QHR B;  5IF1 B;  3TNH B;  3TW7 A;  3EOC B;  2C6T B;  3K7A M;  4YOS A;  1VIN A;  2ZPG B;  5EFQ B;  4F7N B;  3HBL A;  1JOW A;  3DJB A;  3QHW B;  4OGR B;  1E7P A;  4NST B;  3POM A;  2WIP B;  2DPP B;  4AKG A;  2AHJ B;  4BCN B;  2I40 B;  2BPM B;  1OKV B;  3DDQ B;  2DXC B;  5ICP B;  2CYZ B;  4BBS M;  1VOL A;  4ROC A;  5DQV A;  2R7G A;  3X28 B;  2V22 B;  4F7S B;  2ZPH B;  2C5V B;  4MFE A;  2G77 A;  2ZPF B;  2G9X B;  2QDJ A;  4BCM B;  2IW6 B;  4EOR B;  1UGP B;  4CRL B;  3A8H B;  3G33 B;  3HZJ A;  3BLR B;  2WPA B;  3EJ1 B;  4BCF B;  1E9H B;  1VYW B;  3DDP B;  5CEI B;  4CFX B;  2DXB B;  4ZGE B;  1H1P B;  4HLQ A;  3X25 B;  1GUX A;  2LW4 A;  3QWL A;  2QF7 A;  5ACB A;  3BLH B;  1UGR B;  1KXU A;  3QZ9 B;  4IMY B;  3DOG B;  2CZ6 B;  2WJ9 A;  2WMB B;  3QYH B;  1FIN B;  2UZD B;  4BCQ B;  4F7L B;  3HO8 A;  1AIS B;  3WVE B;  4FX3 B;  4M6V A;  1JKW A;  2PK2 A;  5HBJ B;  4CFV B;  1TD6 A;  4JX4 A;  1H24 B;  4BCI B;  1GUX B;  4MFD A;  2CJM B;  1N4M A;  4EOO B;  1G3N C;  4HNU A;  4BCP B;  1OGU B;  4AKI A;  2IN3 A;  2BKZ B;  4OB3 B;  1H27 B;  1ZP2 A;  3BG9 A;  3NDQ A;  4EOI B;  1QLB A;  1BU2 A;  2BS3 A;  2WEV B;  4NC6 A;  2CZ1 B;  4EOP B;  2F2C A;  4LOC A;  4YOZ A;  2C4G B;  4JX6 A;  4YOO A;  2CZ7 B;  3DTO A;  4F7J B;  5HBE B;  2B9R A;  2W2H A;  5HNB B;  4ELJ A;  3VKG A;  3PO3 S;  4Y72 B;  4CFU B;  2UUE B;  3X20 B;  5EJC A;  2DME A;  2ZZD B;  2QDY B;  3BLQ B;  3MI9 B;  3TW6 A;  4II5 B;  4CXA B;  4ZGD B;  3BG3 A;  1OIY B;  4FM4 B;  4MIM A;  2PMI B;  5HQ0 B;  4F6W B;  4BCO B;  3BHV B;  3TNI B;  5HVY B;  4JX5 A;  1H28 B;  3VYH B;  3X24 B;  3MIA B;  2W9F A;  3F5X B;  2ZPB B;  1D3U B;  2UZL B;  5LQF B;  3HB9 A;  5FGK B;  4YC3 B;  1H1Q B;  5LMK B;  4AI6 A;  4EOQ B;  4EOJ B;  2QQ8 A;  4OB2 B;  3WVD B;  1AD6 A;  2WHB B;  1H1S B;  3BG5 A;  5IDN B;  2KMG A;  1QMZ B;  4UN0 A; 
#chains in the Genus database with same CATH homology
 2DXC B;  4HNU A;  2CYZ B;  4BBR M;  4BBS M;  4OB0 B;  4AKI A;  2D0Q B;  4HL4 A;  3DL1 A;  3X28 B;  1FKM A;  3QYE A;  4OB3 B;  3BG9 A;  3A8O B;  3VYG B;  2ZPH B;  1QLB A;  2BS3 A;  3KHI A;  4NC6 A;  4OB1 B;  2ZPE B;  4MFE A;  2CZ1 B;  2G77 A;  2ZPF B;  3QYB A;  2BS2 A;  2QDJ A;  3A8M B;  4LOC A;  1UGP B;  1AHJ B;  4JX6 A;  3H4C A;  3A8H B;  2CZ7 B;  3HZJ A;  3A8G B;  4Z6Y A;  1IRE B;  1UGS B;  4ELJ A;  3VKG A;  2QFZ A;  4QSH A;  3QXE B;  4HNT A;  2DXB B;  4ZGE B;  3X20 B;  4HLQ A;  5EJC A;  2ZCF B;  3X25 B;  2ZZD B;  2QDY B;  3QWL A;  2QF7 A;  3QYG B;  3TW6 A;  4HNV A;  4AKH A;  4ZGD B;  3VKH A;  1UGR B;  3BG3 A;  4FM4 B;  3QZ9 B;  1V29 B;  4MIM A;  2CZ6 B;  2WJ9 A;  3HHT B;  4JX5 A;  3VYH B;  3QZ5 B;  3X24 B;  3A8L B;  2BS4 A;  2CZ0 B;  2ZPI B;  3QYH B;  2KR6 A;  3TW7 A;  2ZPB B;  3HB9 A;  2ZPG B;  3HBL A;  1UGQ B;  4AI6 A;  3HO8 A;  4ZGJ B;  3WVE B;  2QQ8 A;  4M6V A;  4OB2 B;  3X26 B;  2DD4 B;  2DD5 B;  3WVD B;  4JX4 A;  1E7P A;  2DPP B;  4AKG A;  3BG5 A;  4MFD A;  2KMG A;  2AHJ B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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