3VYGB

Crystal structure of thiocyanate hydrolase mutant r136w
Total Genus 42
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
42
sequence length
152
structure length
152
Chain Sequence
SSIREEVHRHLGTVALMQPALHQQTHAPAPTEITHTLFRAYTRVPHDVGGEADVPIEYHEKEEEIWELNTFATCECLAWRGVWTAEERRRKQNCDVGQTVYLGMPYYGRWLLTAARILVDKQFVTLTELHNKIVEMRERVASGQGLGEYLPP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Thiocyanate hydrolase subunit alpha
publication title Effects of argnine residue around the substrate pocket on the substrate specificity of thiocyanate hydrolase
rcsb
source organism Thiobacillus thioparus
molecule tags Hydrolase
total genus 42
structure length 152
sequence length 152
chains with identical sequence E, H, K
ec nomenclature ec 3.5.5.8: Thiocyanate hydrolase.
pdb deposition date 2012-09-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF02211 NHase_beta Nitrile hydratase beta subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.472.20 Mainly Alpha Orthogonal Bundle Cyclin A; domain 1 Cyclin A; domain 1 3vygB00
2CZ1B 3A8GB 4ZGJB 3QXEB 2ZPBB 4OB0B 2DD4B 3VYHB 3A8MB 1V29B 1UGRB 3WVEB 3A8LB 3X24B 2QDYB 4ZGDB 3QZ5B 2AHJB 3A8HB 4OB2B 2ZPFB 2ZZDB 2CZ7B 2ZPGB 2DPPB 2DXCB 3A8OB 1AHJB 2DD5B 4OB1B 4OB3B 3X20B 3QYGB 2ZPIB 3WVDB 2ZCFB 1UGQB 2D0QB 3X25B 3QZ9B 2CZ6B 2CYZB 1IREB 3HHTB 2CZ0B 4FM4B 1UGSB 3VYGB 2DXBB 1UGPB 2ZPEB 3X28B 2ZPHB 4ZGEB 3X26B 3QYHB
chains in the Genus database with same CATH superfamily
2IN3A 4I3ZB 2G77A 3DDPB 4MFDA 4OB2B 3A8OB 2WJ9A 2QF7A 2QQ8A 5HBJB 2CZ6B 3KHIA 4ZGEB 3X26B 5IF1B 3QYHB 4ZGJB 5HBHB 4BCHB 1O9KB 1P5EB 5EFQB 3QHWB 4HLQA 2PMIB 3LQ5B 2C5NB 4ELJA 3F5XB 3TW7A 4OR5B 2EUFA 1E7PA 1OGUB 1BU2A 1OL2B 3MY1B 1UGRB 4CRLB 4F7SB 3A8HB 5IDNB 4OGRB 1OL1B 3QWLA 2ZZDB 4NSTB 2WFYB 3BLRB 4FX3B 2IW8B 3QYBA 4BCGB 4F6SB 4YC3B 2W9FA 3QXEB 1GH6B 3EJ1B 5DQWA 2KR6A 4KRDB 1AD6A 4F6UB 5IDPB 4F70B 4AI6A 3HO8A 3QHRB 3DTOA 3DOGB 4BCNB 1UGQB 5HBEB 3GTMS 4LOCA 4EOKB 1C9BA 1XO2A 3HZJA 1GUXB 1KXUA 1F5QB 1H1QB 4YOZA 4ZGDB 2BKZB 1UNLD 1TD6A 2X1NB 2ZPIB 4CFMB 1IREB 4HNUA 4BCND 5IHYA 2DXBB 2B9RA 4EOPB 3X28B 4OB0B 2C5XB 5CYIB 3RGFB 3HBLA 4HL4A 4BY1X 2BPMB 1GY3B 2AHJB 4BCIB 1VYWB 1O9KA 1QMZB 1AHJB 3X20B 1PKDB 4ROCA 3BG9A 1H25B 4MFEA 3K7AM 2W99A 1UGPB 3TW6A 2ZPHB 2G9XB 2ZPBB 4EC8B 1JOWA 2UZBB 1ENWA 4ROEA 4G6LB 2WXVB 2CCIB 4OB3B 2DD5B 2WEVB 3POMA 3X25B 2C5VB 1H26B 2F2CA 4BCQB 3VKGA 3BHVB 2DD4B 4NC6A 1H24B 2QFZA 4CFVB 4EC9B 1QLBA 4F7NB 2UZDB 1FKMA 3TNHB 4CFWB 5CEIB 4EOSB 1H1RB 1E9HB 4KRCB 3HB9A 3QYEA 5FGKB 3TN8B 1VOLA 2WPAB 2UZEB 2V22B 4BBSM 4BXXX 4BCQD 5HNBB 2QDYB 4F7JB 4EOIB 1GUXA 4EONB 3MI9B 4Y72B 5HQ0B 2PK9B 2BS4A 3EIDB 4JX4A 2BS3A 2CZ0B 2UUEB 4EOJB 5L2WB 4IMYB 3H4CA 3BLQB 4CFUB 2UZLB 2I53A 4UN0A 4CXAB 2DPPB 2I40B 3DJBA 2WMAB 3BHUB 3G33B 4BCOB 2KMGA 2C4GB 5ICPB 1JKWA 1H1SB 2IVXA 3DDQB 4YOSA 3NDQA 4QSHA 3A8MB 1OIUB 4HNTA 4ELLA 4CFUD 1VINA 2C5OB 1H27B 2ZPGB 5EJCA 4F6WB 1AISB 4FM4B 3HHTB 4F7LB 4BCFB 4EOMB 1G3NC 3MY5B 2CZ1B 4M6VA 4BY7X 2WHBB 2WMBB 2DMEA 2IW9B 3WVEB 3A8LB 4AKGA 2W9ZA 4BCKB 4AKHA 1W98B 4BBRM 5LQFB 4OB1B 2PK2A 3QYGB 1UNGD 2CCHB 2LW4A 2CYZB 2WIPB 4II5B 1UGSB 3VKHA 3B57A 2IW6B 5LMKB 1FVVB 3TNWB 2JGZB 3O0GD 4TTHA 3BLHB 3QZ5B 2PJQA 1JSTB 1N4MA 4CFNB 2W96A 3QZ9B 1UNHD 5ACBA 4EORB 2C6TB 1JSUB 3A8GB 2QGSA 1ZP2A 2BS2A 3VYHB 3MIAB 4JX5A 3X24B 1OIYB 1OKWB 2ZPFB 2CZ7B 4CFXB 3DL1A 2R7GA 3EOCB 4HNVA 2PHGA 3PO3S 3BHTB 2W2HA 1FINB 5BNJB 5DQVA 4RODA 1TFBA 4JX6A 3BG3A 4BCMB 1D3UB 4EOLB 3BG5A 2ZPEB 4EOOB 5HVYB 1OI9B 2QDJA 1V29B 4Z6YA 4BCJB 3M03A 5I5ZB 2CJMB 4BCPB 4AKIA 1H4LD 1H28B 1URCB 2DXCB 4YOOA 4MIMA 1OKVB 2ZCFB 3TNIB 3WVDB 2D0QB 4BCMD 2WIHB 4EOQB 3VYGB 1H1PB
chains in the Genus database with same CATH topology
4BBSM 3HZJA 3VKHA 2G77A 4MFDA 2QDYB 4ZGDB 3QZ5B 4OB2B 3A8OB 2WJ9A 2ZPIB 2QF7A 2BS4A 2QQ8A 3QZ9B 4JX4A 2CZ6B 1IREB 4HNUA 2BS3A 2CZ0B 2DXBB 3KHIA 3X28B 4ZGEB 3X26B 3QYHB 3H4CA 4ZGJB 3A8GB 4OB0B 2BS2A 3VYHB 3HBLA 4JX5A 4HL4A 3X24B 2AHJB 2ZPFB 2CZ7B 4HLQA 2DPPB 1AHJB 3X20B 3BG9A 4ELJA 2KMGA 3TW7A 4MFEA 1UGPB 3DL1A 3TW6A 2ZPHB 4HNVA 1E7PA 2ZPBB 4QSHA 3A8MB 1UGRB 4HNTA 3A8HB 4JX6A 3QWLA 3BG3A 2ZZDB 2ZPGB 5EJCA 4OB3B 2DD5B 3X25B 4FM4B 3HHTB 3BG5A 3QYBA 2ZPEB 3VKGA 2CZ1B 4M6VA 3QXEB 2DD4B 4NC6A 2QDJA 1V29B 4Z6YA 2QFZA 3WVEB 3A8LB 2KR6A 4AKGA 1QLBA 4AI6A 3HO8A 4AKIA 4AKHA 2DXCB 4BBRM 4OB1B 1FKMA 3QYGB 4MIMA 3WVDB 2ZCFB 1UGQB 2D0QB 2CYZB 1UGSB 4LOCA 3VYGB 3HB9A 3QYEA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2CZ1 B;  3A8G B;  4ZGJ B;  3QXE B;  2ZPB B;  4OB0 B;  2DD4 B;  3VYH B;  3A8M B;  1V29 B;  1UGR B;  3WVE B;  3A8L B;  3X24 B;  2QDY B;  4ZGD B;  3QZ5 B;  2AHJ B;  3A8H B;  4OB2 B;  2ZPF B;  2ZZD B;  2CZ7 B;  2ZPG B;  2DPP B;  2DXC B;  3A8O B;  1AHJ B;  2DD5 B;  4OB1 B;  4OB3 B;  3X20 B;  3QYG B;  2ZPI B;  3WVD B;  2ZCF B;  1UGQ B;  2D0Q B;  3X25 B;  3QZ9 B;  2CZ6 B;  2CYZ B;  1IRE B;  3HHT B;  2CZ0 B;  4FM4 B;  1UGS B;  3VYG B;  2DXB B;  1UGP B;  2ZPE B;  3X28 B;  2ZPH B;  4ZGE B;  3X26 B;  3QYH B; 
#chains in the Genus database with same CATH topology
 2IN3 A;  4I3Z B;  2G77 A;  3DDP B;  4MFD A;  4OB2 B;  3A8O B;  2WJ9 A;  2QF7 A;  2QQ8 A;  5HBJ B;  2CZ6 B;  3KHI A;  4ZGE B;  3X26 B;  5IF1 B;  3QYH B;  4ZGJ B;  5HBH B;  4BCH B;  1O9K B;  1P5E B;  5EFQ B;  3QHW B;  4HLQ A;  2PMI B;  3LQ5 B;  2C5N B;  4ELJ A;  3F5X B;  3TW7 A;  4OR5 B;  2EUF A;  1E7P A;  1OGU B;  1BU2 A;  1OL2 B;  3MY1 B;  1UGR B;  4CRL B;  4F7S B;  3A8H B;  5IDN B;  4OGR B;  1OL1 B;  3QWL A;  2ZZD B;  4NST B;  2WFY B;  3BLR B;  4FX3 B;  2IW8 B;  3QYB A;  4BCG B;  4F6S B;  4YC3 B;  2W9F A;  3QXE B;  1GH6 B;  3EJ1 B;  5DQW A;  2KR6 A;  4KRD B;  1AD6 A;  4F6U B;  5IDP B;  4F70 B;  4AI6 A;  3HO8 A;  3QHR B;  3DTO A;  3DOG B;  4BCN B;  1UGQ B;  5HBE B;  3GTM S;  4LOC A;  4EOK B;  1C9B A;  1XO2 A;  3HZJ A;  1GUX B;  1KXU A;  1F5Q B;  1H1Q B;  4YOZ A;  4ZGD B;  2BKZ B;  1UNL D;  1TD6 A;  2X1N B;  2ZPI B;  4CFM B;  1IRE B;  4HNU A;  4BCN D;  5IHY A;  2DXB B;  2B9R A;  4EOP B;  3X28 B;  4OB0 B;  2C5X B;  5CYI B;  3RGF B;  3HBL A;  4HL4 A;  4BY1 X;  2BPM B;  1GY3 B;  2AHJ B;  4BCI B;  1VYW B;  1O9K A;  1QMZ B;  1AHJ B;  3X20 B;  1PKD B;  4ROC A;  3BG9 A;  1H25 B;  4MFE A;  3K7A M;  2W99 A;  1UGP B;  3TW6 A;  2ZPH B;  2G9X B;  2ZPB B;  4EC8 B;  1JOW A;  2UZB B;  1ENW A;  4ROE A;  4G6L B;  2WXV B;  2CCI B;  4OB3 B;  2DD5 B;  2WEV B;  3POM A;  3X25 B;  2C5V B;  1H26 B;  2F2C A;  4BCQ B;  3VKG A;  3BHV B;  2DD4 B;  4NC6 A;  1H24 B;  2QFZ A;  4CFV B;  4EC9 B;  1QLB A;  4F7N B;  2UZD B;  1FKM A;  3TNH B;  4CFW B;  5CEI B;  4EOS B;  1H1R B;  1E9H B;  4KRC B;  3HB9 A;  3QYE A;  5FGK B;  3TN8 B;  1VOL A;  2WPA B;  2UZE B;  2V22 B;  4BBS M;  4BXX X;  4BCQ D;  5HNB B;  2QDY B;  4F7J B;  4EOI B;  1GUX A;  4EON B;  3MI9 B;  4Y72 B;  5HQ0 B;  2PK9 B;  2BS4 A;  3EID B;  4JX4 A;  2BS3 A;  2CZ0 B;  2UUE B;  4EOJ B;  5L2W B;  4IMY B;  3H4C A;  3BLQ B;  4CFU B;  2UZL B;  2I53 A;  4UN0 A;  4CXA B;  2DPP B;  2I40 B;  3DJB A;  2WMA B;  3BHU B;  3G33 B;  4BCO B;  2KMG A;  2C4G B;  5ICP B;  1JKW A;  1H1S B;  2IVX A;  3DDQ B;  4YOS A;  3NDQ A;  4QSH A;  3A8M B;  1OIU B;  4HNT A;  4ELL A;  4CFU D;  1VIN A;  2C5O B;  1H27 B;  2ZPG B;  5EJC A;  4F6W B;  1AIS B;  4FM4 B;  3HHT B;  4F7L B;  4BCF B;  4EOM B;  1G3N C;  3MY5 B;  2CZ1 B;  4M6V A;  4BY7 X;  2WHB B;  2WMB B;  2DME A;  2IW9 B;  3WVE B;  3A8L B;  4AKG A;  2W9Z A;  4BCK B;  4AKH A;  1W98 B;  4BBR M;  5LQF B;  4OB1 B;  2PK2 A;  3QYG B;  1UNG D;  2CCH B;  2LW4 A;  2CYZ B;  2WIP B;  4II5 B;  1UGS B;  3VKH A;  3B57 A;  2IW6 B;  5LMK B;  1FVV B;  3TNW B;  2JGZ B;  3O0G D;  4TTH A;  3BLH B;  3QZ5 B;  2PJQ A;  1JST B;  1N4M A;  4CFN B;  2W96 A;  3QZ9 B;  1UNH D;  5ACB A;  4EOR B;  2C6T B;  1JSU B;  3A8G B;  2QGS A;  1ZP2 A;  2BS2 A;  3VYH B;  3MIA B;  4JX5 A;  3X24 B;  1OIY B;  1OKW B;  2ZPF B;  2CZ7 B;  4CFX B;  3DL1 A;  2R7G A;  3EOC B;  4HNV A;  2PHG A;  3PO3 S;  3BHT B;  2W2H A;  1FIN B;  5BNJ B;  5DQV A;  4ROD A;  1TFB A;  4JX6 A;  3BG3 A;  4BCM B;  1D3U B;  4EOL B;  3BG5 A;  2ZPE B;  4EOO B;  5HVY B;  1OI9 B;  2QDJ A;  1V29 B;  4Z6Y A;  4BCJ B;  3M03 A;  5I5Z B;  2CJM B;  4BCP B;  4AKI A;  1H4L D;  1H28 B;  1URC B;  2DXC B;  4YOO A;  4MIM A;  1OKV B;  2ZCF B;  3TNI B;  3WVD B;  2D0Q B;  4BCM D;  2WIH B;  4EOQ B;  3VYG B;  1H1P B; 
#chains in the Genus database with same CATH homology
 4BBS M;  3HZJ A;  3VKH A;  2G77 A;  4MFD A;  2QDY B;  4ZGD B;  3QZ5 B;  4OB2 B;  3A8O B;  2WJ9 A;  2ZPI B;  2QF7 A;  2BS4 A;  2QQ8 A;  3QZ9 B;  4JX4 A;  2CZ6 B;  1IRE B;  4HNU A;  2BS3 A;  2CZ0 B;  2DXB B;  3KHI A;  3X28 B;  4ZGE B;  3X26 B;  3QYH B;  3H4C A;  4ZGJ B;  3A8G B;  4OB0 B;  2BS2 A;  3VYH B;  3HBL A;  4JX5 A;  4HL4 A;  3X24 B;  2AHJ B;  2ZPF B;  2CZ7 B;  4HLQ A;  2DPP B;  1AHJ B;  3X20 B;  3BG9 A;  4ELJ A;  2KMG A;  3TW7 A;  4MFE A;  1UGP B;  3DL1 A;  3TW6 A;  2ZPH B;  4HNV A;  1E7P A;  2ZPB B;  4QSH A;  3A8M B;  1UGR B;  4HNT A;  3A8H B;  4JX6 A;  3QWL A;  3BG3 A;  2ZZD B;  2ZPG B;  5EJC A;  4OB3 B;  2DD5 B;  3X25 B;  4FM4 B;  3HHT B;  3BG5 A;  3QYB A;  2ZPE B;  3VKG A;  2CZ1 B;  4M6V A;  3QXE B;  2DD4 B;  4NC6 A;  2QDJ A;  1V29 B;  4Z6Y A;  2QFZ A;  3WVE B;  3A8L B;  2KR6 A;  4AKG A;  1QLB A;  4AI6 A;  3HO8 A;  4AKI A;  4AKH A;  2DXC B;  4BBR M;  4OB1 B;  1FKM A;  3QYG B;  4MIM A;  3WVD B;  2ZCF B;  1UGQ B;  2D0Q B;  2CYZ B;  1UGS B;  4LOC A;  3VYG B;  3HB9 A;  3QYE A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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