2KMGA

The structure of the klca and ardb proteins show a novel fold and antirestriction activity against type i dna restriction systems in vivo but not in vitro
Total Genus 31
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
31
sequence length
142
structure length
142
Chain Sequence
MNTEEQPVTASLVAEAQRLDFLPTYFGPRLMMRGEALVYAWMRRLCERYNGAYWHYYALSDGGFYMAPDLAGRLEIEVNGNGFRGELSADAAGIVATLFALGQLAAEIADTDAADALIDRYHFLRGFAAGHPEAAAIYRAID
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Gene regulation
molecule keywords KlcA
publication title The structure of the KlcA and ArdB proteins reveals a novel fold and antirestriction activity against Type I DNA restriction systems in vivo but not in vitro
pubmed doi rcsb
source organism Bordetella pertussis
total genus 31
structure length 142
sequence length 142
ec nomenclature
pdb deposition date 2009-07-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03230 Antirestrict Antirestriction protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.472.120 Mainly Alpha Orthogonal Bundle Cyclin A; domain 1 Cyclin A; domain 1 2kmgA00
2KMGA 2WJ9A
chains in the Genus database with same CATH superfamily
4BCJB 1H28B 3DL1A 4FX3B 1N4MA 2QQ8A 4YOZA 2DXCB 1H27B 4EC9B 4AKHA 2IW9B 1OI9B 3M03A 4ELLA 4F7NB 4BCKB 5BNJB 1UNLD 3VYGB 2ZPHB 2IVXA 1OL1B 2DD4B 2PK2A 3EJ1B 4ZGJB 4LOCA 5HVYB 4HNUA 3QXEB 5IHYA 1D3UB 4BCFB 3DOGB 4RODA 5LMKB 4ROCA 2CZ1B 2IN3A 2C4GB 2WIHB 3KHIA 3HB9A 5I5ZB 4OR5B 2W2HA 3X28B 5LQFB 2W99A 3MY5B 2WEVB 2B9RA 2EUFA 2D0QB 3A8GB 4AKGA 1AHJB 1URCB 4ZGEB 4IMYB 2KMGA 2CCIB 1OGUB 2IW8B 3QYGB 3BLRB 1ZP2A 3A8MB 3VKHA 1H26B 5ACBA 3PO3S 3EIDB 2ZPGB 5ICPB 4II5B 4BY1X 3DTOA 2QDYB 2QF7A 2PJQA 2PMIB 5IF1B 3X20B 1H25B 5HBEB 4CFWB 4OB0B 3QYEA 2F2CA 2BKZB 1KXUA 4BCPB 2C5NB 4AI6A 3TW7A 1H24B 1OKWB 3BHUB 4BCMB 3HBLA 3H4CA 3F5XB 4BBSM 1OKVB 4EONB 5DQWA 1GH6B 3B57A 4CXAB 2I40B 5EFQB 2LW4A 3LQ5B 2UUEB 2UZDB 4F6WB 4UN0A 4MFEA 4MFDA 1G3NC 1H1QB 4OGRB 1JSUB 2WIPB 3MIAB 4ELJA 2C6TB 2CZ0B 3WVDB 4BCMD 2G77A 4EOKB 4F70B 2G9XB 1VOLA 2AHJB 2KR6A 2ZCFB 3TNHB 1TD6A 1E7PA 2QDJA 2DD5B 4EOQB 4YOOA 3X26B 4NSTB 4ROEA 2WXVB 2WMAB 1JSTB 1QMZB 1GUXA 3QWLA 2CCHB 4OB1B 4BCNB 4FM4B 5HBHB 1W98B 1F5QB 3HHTB 3MY1B 1UGSB 4BCQB 4OB3B 3G33B 1TFBA 4YC3B 4BCHB 1UGRB 3O0GD 2DXBB 4M6VA 2W9ZA 4YOSA 2ZPBB 2W96A 2BS3A 2DPPB 2PK9B 2X1NB 4BCND 2WFYB 3DDPB 5EJCA 2CYZB 3HO8A 4EOJB 4G6LB 2BS4A 4BCOB 2BPMB 5L2WB 3BG9A 4EORB 4BY7X 5DQVA 3BHVB 4BCQD 2QGSA 1OIYB 4F7JB 4HL4A 4OB2B 1OIUB 1UNGD 5IDPB 2DMEA 1PKDB 2W9FA 1XO2A 3K7AM 4BCGB 2ZZDB 1P5EB 3A8HB 2IW6B 4CFMB 1ENWA 3X24B 3TNWB 5HNBB 2R7GA 2WPAB 1QLBA 2ZPIB 1UGQB 1FINB 5HQ0B 2I53A 1AISB 4KRDB 4Z6YA 2CJMB 3QZ5B 4KRCB 4EOLB 3POMA 3TN8B 3DJBA 1GUXB 2UZEB 4TTHA 4JX5A 4CFUB 1C9BA 2BS2A 3BHTB 4CRLB 3QYHB 1BU2A 3QHWB 1FKMA 3A8OB 2C5VB 1UNHD 4EOIB 4I3ZB 1E9HB 2ZPFB 2UZLB 2C5OB 2WHBB 4F6SB 1H1SB 4EOPB 1UGPB 1H1RB 4JX6A 4EOOB 3NDQA 3TW6A 3X25B 1O9KB 4ZGDB 4CFVB 2WJ9A 1IREB 4CFUD 3MI9B 3QYBA 3EOCB 2QFZA 3VYHB 4EC8B 4CFNB 1H1PB 4EOSB 2CZ7B 3A8LB 3HZJA 4AKIA 1VYWB 4HNVA 4HNTA 4BXXX 1JKWA 4Y72B 3WVEB 2V22B 4QSHA 3BLHB 2WMBB 1O9KA 2UZBB 4NC6A 5IDNB 4CFXB 1AD6A 4BCIB 1OL2B 3QZ9B 4MIMA 3GTMS 2ZPEB 3DDQB 1GY3B 2CZ6B 4BBRM 4JX4A 2JGZB 3RGFB 1H4LD 5FGKB 5CYIB 4F6UB 4F7SB 5HBJB 1V29B 3QHRB 5CEIB 4F7LB 4HLQA 1VINA 4EOMB 3TNIB 3BLQB 2PHGA 2C5XB 3BG3A 1JOWA 3BG5A 1FVVB 3VKGA
chains in the Genus database with same CATH topology
1FKMA 3A8OB 3DL1A 3HHTB 2QDYB 2QF7A 2QQ8A 1UGSB 2DXCB 2ZPFB 3X20B 4AKHA 4OB3B 4OB0B 3QYEA 1UGPB 1UGRB 4JX6A 3TW6A 3X25B 4AI6A 2DXBB 4ZGDB 4M6VA 3VYGB 2ZPHB 2WJ9A 3TW7A 2ZPBB 1IREB 2DD4B 2BS3A 2DPPB 3QYBA 4ZGJB 2QFZA 4LOCA 3VYHB 3HBLA 3H4CA 5EJCA 4HNUA 2CYZB 3HO8A 4BBSM 2BS4A 3QXEB 2CZ7B 3A8LB 3BG9A 3HZJA 4AKIA 4HNVA 4HNTA 3WVEB 4HL4A 4QSHA 2CZ1B 4OB2B 3KHIA 4NC6A 4MFEA 4MFDA 3HB9A 4ELJA 3QZ9B 4MIMA 2CZ0B 2ZZDB 3WVDB 3X28B 2G77A 3A8HB 2ZPEB 3X24B 1QLBA 2CZ6B 2D0QB 2ZPIB 1UGQB 4BBRM 4JX4A 2AHJB 2KR6A 3A8GB 2ZCFB 4AKGA 1AHJB 4ZGEB 1V29B 4Z6YA 2KMGA 1E7PA 2QDJA 3QZ5B 2DD5B 3X26B 3QYGB 4HLQA 3VKHA 3A8MB 3QWLA 4JX5A 4OB1B 3BG3A 2BS2A 3BG5A 3QYHB 3VKGA 2ZPGB 4FM4B
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2KMG A;  2WJ9 A; 
#chains in the Genus database with same CATH topology
 4BCJ B;  1H28 B;  3DL1 A;  4FX3 B;  1N4M A;  2QQ8 A;  4YOZ A;  2DXC B;  1H27 B;  4EC9 B;  4AKH A;  2IW9 B;  1OI9 B;  3M03 A;  4ELL A;  4F7N B;  4BCK B;  5BNJ B;  1UNL D;  3VYG B;  2ZPH B;  2IVX A;  1OL1 B;  2DD4 B;  2PK2 A;  3EJ1 B;  4ZGJ B;  4LOC A;  5HVY B;  4HNU A;  3QXE B;  5IHY A;  1D3U B;  4BCF B;  3DOG B;  4ROD A;  5LMK B;  4ROC A;  2CZ1 B;  2IN3 A;  2C4G B;  2WIH B;  3KHI A;  3HB9 A;  5I5Z B;  4OR5 B;  2W2H A;  3X28 B;  5LQF B;  2W99 A;  3MY5 B;  2WEV B;  2B9R A;  2EUF A;  2D0Q B;  3A8G B;  4AKG A;  1AHJ B;  1URC B;  4ZGE B;  4IMY B;  2KMG A;  2CCI B;  1OGU B;  2IW8 B;  3QYG B;  3BLR B;  1ZP2 A;  3A8M B;  3VKH A;  1H26 B;  5ACB A;  3PO3 S;  3EID B;  2ZPG B;  5ICP B;  4II5 B;  4BY1 X;  3DTO A;  2QDY B;  2QF7 A;  2PJQ A;  2PMI B;  5IF1 B;  3X20 B;  1H25 B;  5HBE B;  4CFW B;  4OB0 B;  3QYE A;  2F2C A;  2BKZ B;  1KXU A;  4BCP B;  2C5N B;  4AI6 A;  3TW7 A;  1H24 B;  1OKW B;  3BHU B;  4BCM B;  3HBL A;  3H4C A;  3F5X B;  4BBS M;  1OKV B;  4EON B;  5DQW A;  1GH6 B;  3B57 A;  4CXA B;  2I40 B;  5EFQ B;  2LW4 A;  3LQ5 B;  2UUE B;  2UZD B;  4F6W B;  4UN0 A;  4MFE A;  4MFD A;  1G3N C;  1H1Q B;  4OGR B;  1JSU B;  2WIP B;  3MIA B;  4ELJ A;  2C6T B;  2CZ0 B;  3WVD B;  4BCM D;  2G77 A;  4EOK B;  4F70 B;  2G9X B;  1VOL A;  2AHJ B;  2KR6 A;  2ZCF B;  3TNH B;  1TD6 A;  1E7P A;  2QDJ A;  2DD5 B;  4EOQ B;  4YOO A;  3X26 B;  4NST B;  4ROE A;  2WXV B;  2WMA B;  1JST B;  1QMZ B;  1GUX A;  3QWL A;  2CCH B;  4OB1 B;  4BCN B;  4FM4 B;  5HBH B;  1W98 B;  1F5Q B;  3HHT B;  3MY1 B;  1UGS B;  4BCQ B;  4OB3 B;  3G33 B;  1TFB A;  4YC3 B;  4BCH B;  1UGR B;  3O0G D;  2DXB B;  4M6V A;  2W9Z A;  4YOS A;  2ZPB B;  2W96 A;  2BS3 A;  2DPP B;  2PK9 B;  2X1N B;  4BCN D;  2WFY B;  3DDP B;  5EJC A;  2CYZ B;  3HO8 A;  4EOJ B;  4G6L B;  2BS4 A;  4BCO B;  2BPM B;  5L2W B;  3BG9 A;  4EOR B;  4BY7 X;  5DQV A;  3BHV B;  4BCQ D;  2QGS A;  1OIY B;  4F7J B;  4HL4 A;  4OB2 B;  1OIU B;  1UNG D;  5IDP B;  2DME A;  1PKD B;  2W9F A;  1XO2 A;  3K7A M;  4BCG B;  2ZZD B;  1P5E B;  3A8H B;  2IW6 B;  4CFM B;  1ENW A;  3X24 B;  3TNW B;  5HNB B;  2R7G A;  2WPA B;  1QLB A;  2ZPI B;  1UGQ B;  1FIN B;  5HQ0 B;  2I53 A;  1AIS B;  4KRD B;  4Z6Y A;  2CJM B;  3QZ5 B;  4KRC B;  4EOL B;  3POM A;  3TN8 B;  3DJB A;  1GUX B;  2UZE B;  4TTH A;  4JX5 A;  4CFU B;  1C9B A;  2BS2 A;  3BHT B;  4CRL B;  3QYH B;  1BU2 A;  3QHW B;  1FKM A;  3A8O B;  2C5V B;  1UNH D;  4EOI B;  4I3Z B;  1E9H B;  2ZPF B;  2UZL B;  2C5O B;  2WHB B;  4F6S B;  1H1S B;  4EOP B;  1UGP B;  1H1R B;  4JX6 A;  4EOO B;  3NDQ A;  3TW6 A;  3X25 B;  1O9K B;  4ZGD B;  4CFV B;  2WJ9 A;  1IRE B;  4CFU D;  3MI9 B;  3QYB A;  3EOC B;  2QFZ A;  3VYH B;  4EC8 B;  4CFN B;  1H1P B;  4EOS B;  2CZ7 B;  3A8L B;  3HZJ A;  4AKI A;  1VYW B;  4HNV A;  4HNT A;  4BXX X;  1JKW A;  4Y72 B;  3WVE B;  2V22 B;  4QSH A;  3BLH B;  2WMB B;  1O9K A;  2UZB B;  4NC6 A;  5IDN B;  4CFX B;  1AD6 A;  4BCI B;  1OL2 B;  3QZ9 B;  4MIM A;  3GTM S;  2ZPE B;  3DDQ B;  1GY3 B;  2CZ6 B;  4BBR M;  4JX4 A;  2JGZ B;  3RGF B;  1H4L D;  5FGK B;  5CYI B;  4F6U B;  4F7S B;  5HBJ B;  1V29 B;  3QHR B;  5CEI B;  4F7L B;  4HLQ A;  1VIN A;  4EOM B;  3TNI B;  3BLQ B;  2PHG A;  2C5X B;  3BG3 A;  1JOW A;  3BG5 A;  1FVV B;  3VKG A; 
#chains in the Genus database with same CATH homology
 1FKM A;  3A8O B;  3DL1 A;  3HHT B;  2QDY B;  2QF7 A;  2QQ8 A;  1UGS B;  2DXC B;  2ZPF B;  3X20 B;  4AKH A;  4OB3 B;  4OB0 B;  3QYE A;  1UGP B;  1UGR B;  4JX6 A;  3TW6 A;  3X25 B;  4AI6 A;  2DXB B;  4ZGD B;  4M6V A;  3VYG B;  2ZPH B;  2WJ9 A;  3TW7 A;  2ZPB B;  1IRE B;  2DD4 B;  2BS3 A;  2DPP B;  3QYB A;  4ZGJ B;  2QFZ A;  4LOC A;  3VYH B;  3HBL A;  3H4C A;  5EJC A;  4HNU A;  2CYZ B;  3HO8 A;  4BBS M;  2BS4 A;  3QXE B;  2CZ7 B;  3A8L B;  3BG9 A;  3HZJ A;  4AKI A;  4HNV A;  4HNT A;  3WVE B;  4HL4 A;  4QSH A;  2CZ1 B;  4OB2 B;  3KHI A;  4NC6 A;  4MFE A;  4MFD A;  3HB9 A;  4ELJ A;  3QZ9 B;  4MIM A;  2CZ0 B;  2ZZD B;  3WVD B;  3X28 B;  2G77 A;  3A8H B;  2ZPE B;  3X24 B;  1QLB A;  2CZ6 B;  2D0Q B;  2ZPI B;  1UGQ B;  4BBR M;  4JX4 A;  2AHJ B;  2KR6 A;  3A8G B;  2ZCF B;  4AKG A;  1AHJ B;  4ZGE B;  1V29 B;  4Z6Y A;  2KMG A;  1E7P A;  2QDJ A;  3QZ5 B;  2DD5 B;  3X26 B;  3QYG B;  4HLQ A;  3VKH A;  3A8M B;  3QWL A;  4JX5 A;  4OB1 B;  3BG3 A;  2BS2 A;  3BG5 A;  3QYH B;  3VKG A;  2ZPG B;  4FM4 B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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