1ZWWA

Crystal structure of endophilin-a1 bar domain
Total Genus 86

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
86
sequence length
220
structure length
199
Chain Sequence
TKLDDDFKEMERKVDVTSRAVMEIMTKTIEYLQPNPASRPQAEALLAEAMLKFGRELGDDCNFGPALGEVGEAMRELSEVKDSLDMEVKQNFIDPLQNLHDKDLREIQHHLKKLEGRRLDFGYKKKRQGKIPDEELRQALEKFDESKEIAESSMFNLLEMDIEQVSQLSALVQAQLEYHKQAVQILQQVTVRLEERIRQ

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTI2 (62-65)AH4 (180-245)AH3 (109-174)TIV1 (175-178)TII1 (174-177)TIV2 (176-179)TI1 (61-64)AH1 (31-58)AH2 (89-104)Updating...
connected with : NaN
molecule tags Transferase
source organism Mus musculus
publication title Crystal Structure of the Endophilin-A1 BAR Domain.
pubmed doi rcsb
molecule keywords SH3-containing GRB2-like protein 2
total genus 86
structure length 199
sequence length 220
chains with identical sequence B
ec nomenclature ec 2.3.1.-:
pdb deposition date 2005-06-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03114 BAR BAR domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1270.60 Mainly Alpha Up-down Bundle Substrate Binding Domain Of Dnak; Chain:A; Domain 2 Arfaptin homology (AH) domain/BAR domain 1zwwA00
2RAIA 3M3WA 1I4DA 2FICA 3HAHA 4FZSA 4NQIA 3PLTA 4I1QA 2C08A 2ELBA 1URUA 2X3WA 3QE6A 3SOGA 2Q13A 2V0OA 2YKTA 5C5BA 3QWEA 1X04A 3ACOA 4H8SA 1I4TA 2Z0VA 4WPEA 4WPCA 5C5BB 4BNEA 3OK8A 3Q0KA 3SYVA 4DYLA 3LLLA 3CAZA 1Y2OA 2EFKA 3ABHA 2X3XA 3G9GA 4NSWA 3HAIA 4AKVA 4AVMA 1I49A 2D4CA 3DYTA 3Q84A 3QNIA 2Q12A 2Z0NA 2RAKA 2D1LA 1I4LA 3HAJA 4DCNC 1X03A 2EFLA 2Z0OA 3I2WA 4ATMA 2X3VA 1WDZA 2RAJA 1ZWWA
chains in the Genus database with same CATH superfamily
2OBMA 3L3PA 4JWEA 1E2UA 2ELBA 2YKTA 3D4ZA 2GA9D 2OO2A 3SYVA 1OA1A 3ZEDA 4AKVA 4M0MA 4ATMA 2F7PA 2C08A 4R5GA 2Z8YA 3BUIA 1HTYA 3ERCC 4R5LA 1GNTA 4EZNA 4EZVA 2QFFA 1OA0A 2YL5A 1U00A 1TQVA 2D1LA 1X03A 3RPMA 1HWWA 3EJUA 1I4DA 3D2FA 1OAOA 2Q13A 3D50A 2X5CA 3GI7A 3CKDA 3O3NB 3CZSA 2N3KA 3LVTA 2RAKA 3DPOA 1MJGA 4EZZA 2X3VA 1WDZA 4R5IA 2FICA 4FZOA 3D52A 2EWFA 1DKYA 2NCZA 4AZIA 3I04A 2Z0VA 3CVRA 4R5JA 4HR1A 3I39X 3G9GA 2WYIA 3T46A 3BUPA 3DDGA 3CV5A 2RAIA 3DX2A 4JWIA 4AZ7A 4EZPA 3DX3A 2YI8A 1GN9A 4FM3A 4DYLA 4D8JA 1TQSA 2ND0A 2Q12A 2QKWA 1I4LA 5TKYA 3BVUA 4IM3A 4NPHA 4UDXX 3T49A 4AZGA 3CAZA 2JNKA 3D2EA 1SU6A 4AZHA 1HXKA 2YIBA 2WINM 3SOGA 4AZ5A 4KIKA 2V0OA 3QWEA 2LM0A 4IWPA 5E84A 3I01A 3DPPA 3D51A 1R5EA 2KHOA 2X3XA 3BUBA 2ND1A 2WYHA 4E81A 2Z0NA 2O0I1 2YIAA 3I2WA 4EZOA 2YI9A 4AZBA 4IW0A 1DKZA 3BVWA 4JNFA 1QWUA 3B52X 3ER8C 4HY9A 4WPCA 5C5BB 2ALWA 3VEAA 3BVVA 1JQKA 4HR1B 3Q84A 3DDFA 3DX0A 1ZWWA 2YL6A 2GF4A 3RV1A 2YLAA 2X3WA 4IM2A 3QA8A 4AZCA 3T48A 3ABHA 3B53X 1DKXA 3DYTA 4AZ6A 3T4AG 2F7RA 3KDRA 3BVTA 4E3CA 3QE6A 1TQWA 4H8SA 3OWGA 2F7OA 1LQ7A 3DPQA 2OZNB 3CZNA 3QNIA 4F01A 2Z0OA 1O7DC 2PY6A 1E1DA 5FLEX 3C7NA 1SUFA 3M3WA 2YLLA 4H6IA 4NQIA 4EZUA 3PLTA 1X04A 4FZPA 4JLCA 3ER9B 3KAWA 3DX4A 4AVMA 3LMFA 1I49A 2D4CA 3EJPA 3O3MB 3HAJA 2F18A 3EJRA 1URUA 1UPXA 4G6QA 4IWQA 3B51X 2RT6A 3RV0A 2YL9A 4NSWA 2QXLA 4DCNC 2MI7A 3T47A 2JNSA 3BUQA 2EFLA 1R34A 3D4YA 4I1QA 3KAVA 1SU8A 4JN4A 1I4TA 3L3OM 1YWMA 4JL9A 1W9MA 4EZYA 3F7WA 4IWOA 4EZRA 1O7DB 3A98A 2GAFD 2OW7A 3EJTA 4F00A 1E9VA 4R5KA 4EZWA 3VEBA 2F1BA 4WPEA 3Q0KA 1QX1A 1TQUA 1TQTA 4JNEA 3VKHA 1SU7A 4B9QA 1ZYLA 2OW6A 3FD9A 3HAHA 3EJQA 4FZSA 5FIGA 2F1AA 4KIKB 3DX1A 3LLLA 4HYBA 3QNJA 3BUDA 3HAIA 3O3OB 1GNLA 3OHXM 2OBLA 2ZXQA 5C5BA 3OK8A 4UDYX 4IM0A 4H6HA 4PO2A 4EZSA 2YIVX 2PMRA 4EZXA 4EZTA 2EX3B 3UITA 1QWNA 4JWCA 3BLBA 3ACOA 4EZQA 1R33A 4BNEA 5KBPA 4AZCB 1Y2OA 2EFKA 4JWDA 1PS3A 2LXYA 3BVXA 2YL8A 3EJSA 2F7QA 2FYVA 2RAJA
chains in the Genus database with same CATH topology
2RAIA 3M3WA 1I4DA 2FICA 3HAHA 4FZSA 4NQIA 3PLTA 4I1QA 2C08A 2ELBA 1URUA 2X3WA 3QE6A 3SOGA 2Q13A 2V0OA 2YKTA 5C5BA 3QWEA 1X04A 3ACOA 4H8SA 1I4TA 2Z0VA 4WPEA 4WPCA 5C5BB 4BNEA 3OK8A 3Q0KA 3SYVA 4DYLA 3LLLA 3CAZA 1Y2OA 2EFKA 3ABHA 2X3XA 3G9GA 4NSWA 3HAIA 4AKVA 4AVMA 1I49A 2D4CA 3DYTA 3Q84A 3QNIA 2Q12A 2Z0NA 2RAKA 2D1LA 1I4LA 3HAJA 4DCNC 1X03A 2EFLA 2Z0OA 3I2WA 4ATMA 2X3VA 1WDZA 2RAJA 1ZWWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2RAI A;  3M3W A;  1I4D A;  2FIC A;  3HAH A;  4FZS A;  4NQI A;  3PLT A;  4I1Q A;  2C08 A;  2ELB A;  1URU A;  2X3W A;  3QE6 A;  3SOG A;  2Q13 A;  2V0O A;  2YKT A;  5C5B A;  3QWE A;  1X04 A;  3ACO A;  4H8S A;  1I4T A;  2Z0V A;  4WPE A;  4WPC A;  5C5B B;  4BNE A;  3OK8 A;  3Q0K A;  3SYV A;  4DYL A;  3LLL A;  3CAZ A;  1Y2O A;  2EFK A;  3ABH A;  2X3X A;  3G9G A;  4NSW A;  3HAI A;  4AKV A;  4AVM A;  1I49 A;  2D4C A;  3DYT A;  3Q84 A;  3QNI A;  2Q12 A;  2Z0N A;  2RAK A;  2D1L A;  1I4L A;  3HAJ A;  4DCN C;  1X03 A;  2EFL A;  2Z0O A;  3I2W A;  4ATM A;  2X3V A;  1WDZ A;  2RAJ A;  1ZWW A; 
#chains in the Genus database with same CATH topology
 2OBM A;  3L3P A;  4JWE A;  1E2U A;  2ELB A;  2YKT A;  3D4Z A;  2GA9 D;  2OO2 A;  3SYV A;  1OA1 A;  3ZED A;  4AKV A;  4M0M A;  4ATM A;  2F7P A;  2C08 A;  4R5G A;  2Z8Y A;  3BUI A;  1HTY A;  3ERC C;  4R5L A;  1GNT A;  4EZN A;  4EZV A;  2QFF A;  1OA0 A;  2YL5 A;  1U00 A;  1TQV A;  2D1L A;  1X03 A;  3RPM A;  1HWW A;  3EJU A;  1I4D A;  3D2F A;  1OAO A;  2Q13 A;  3D50 A;  2X5C A;  3GI7 A;  3CKD A;  3O3N B;  3CZS A;  2N3K A;  3LVT A;  2RAK A;  3DPO A;  1MJG A;  4EZZ A;  2X3V A;  1WDZ A;  4R5I A;  2FIC A;  4FZO A;  3D52 A;  2EWF A;  1DKY A;  2NCZ A;  4AZI A;  3I04 A;  2Z0V A;  3CVR A;  4R5J A;  4HR1 A;  3I39 X;  3G9G A;  2WYI A;  3T46 A;  3BUP A;  3DDG A;  3CV5 A;  2RAI A;  3DX2 A;  4JWI A;  4AZ7 A;  4EZP A;  3DX3 A;  2YI8 A;  1GN9 A;  4FM3 A;  4DYL A;  4D8J A;  1TQS A;  2ND0 A;  2Q12 A;  2QKW A;  1I4L A;  5TKY A;  3BVU A;  4IM3 A;  4NPH A;  4UDX X;  3T49 A;  4AZG A;  3CAZ A;  2JNK A;  3D2E A;  1SU6 A;  4AZH A;  1HXK A;  2YIB A;  2WIN M;  3SOG A;  4AZ5 A;  4KIK A;  2V0O A;  3QWE A;  2LM0 A;  4IWP A;  5E84 A;  3I01 A;  3DPP A;  3D51 A;  1R5E A;  2KHO A;  2X3X A;  3BUB A;  2ND1 A;  2WYH A;  4E81 A;  2Z0N A;  2O0I 1;  2YIA A;  3I2W A;  4EZO A;  2YI9 A;  4AZB A;  4IW0 A;  1DKZ A;  3BVW A;  4JNF A;  1QWU A;  3B52 X;  3ER8 C;  4HY9 A;  4WPC A;  5C5B B;  2ALW A;  3VEA A;  3BVV A;  1JQK A;  4HR1 B;  3Q84 A;  3DDF A;  3DX0 A;  1ZWW A;  2YL6 A;  2GF4 A;  3RV1 A;  2YLA A;  2X3W A;  4IM2 A;  3QA8 A;  4AZC A;  3T48 A;  3ABH A;  3B53 X;  1DKX A;  3DYT A;  4AZ6 A;  3T4A G;  2F7R A;  3KDR A;  3BVT A;  4E3C A;  3QE6 A;  1TQW A;  4H8S A;  3OWG A;  2F7O A;  1LQ7 A;  3DPQ A;  2OZN B;  3CZN A;  3QNI A;  4F01 A;  2Z0O A;  1O7D C;  2PY6 A;  1E1D A;  5FLE X;  3C7N A;  1SUF A;  3M3W A;  2YLL A;  4H6I A;  4NQI A;  4EZU A;  3PLT A;  1X04 A;  4FZP A;  4JLC A;  3ER9 B;  3KAW A;  3DX4 A;  4AVM A;  3LMF A;  1I49 A;  2D4C A;  3EJP A;  3O3M B;  3HAJ A;  2F18 A;  3EJR A;  1URU A;  1UPX A;  4G6Q A;  4IWQ A;  3B51 X;  2RT6 A;  3RV0 A;  2YL9 A;  4NSW A;  2QXL A;  4DCN C;  2MI7 A;  3T47 A;  2JNS A;  3BUQ A;  2EFL A;  1R34 A;  3D4Y A;  4I1Q A;  3KAV A;  1SU8 A;  4JN4 A;  1I4T A;  3L3O M;  1YWM A;  4JL9 A;  1W9M A;  4EZY A;  3F7W A;  4IWO A;  4EZR A;  1O7D B;  3A98 A;  2GAF D;  2OW7 A;  3EJT A;  4F00 A;  1E9V A;  4R5K A;  4EZW A;  3VEB A;  2F1B A;  4WPE A;  3Q0K A;  1QX1 A;  1TQU A;  1TQT A;  4JNE A;  3VKH A;  1SU7 A;  4B9Q A;  1ZYL A;  2OW6 A;  3FD9 A;  3HAH A;  3EJQ A;  4FZS A;  5FIG A;  2F1A A;  4KIK B;  3DX1 A;  3LLL A;  4HYB A;  3QNJ A;  3BUD A;  3HAI A;  3O3O B;  1GNL A;  3OHX M;  2OBL A;  2ZXQ A;  5C5B A;  3OK8 A;  4UDY X;  4IM0 A;  4H6H A;  4PO2 A;  4EZS A;  2YIV X;  2PMR A;  4EZX A;  4EZT A;  2EX3 B;  3UIT A;  1QWN A;  4JWC A;  3BLB A;  3ACO A;  4EZQ A;  1R33 A;  4BNE A;  5KBP A;  4AZC B;  1Y2O A;  2EFK A;  4JWD A;  1PS3 A;  2LXY A;  3BVX A;  2YL8 A;  3EJS A;  2F7Q A;  2FYV A;  2RAJ A; 
#chains in the Genus database with same CATH homology
 2RAI A;  3M3W A;  1I4D A;  2FIC A;  3HAH A;  4FZS A;  4NQI A;  3PLT A;  4I1Q A;  2C08 A;  2ELB A;  1URU A;  2X3W A;  3QE6 A;  3SOG A;  2Q13 A;  2V0O A;  2YKT A;  5C5B A;  3QWE A;  1X04 A;  3ACO A;  4H8S A;  1I4T A;  2Z0V A;  4WPE A;  4WPC A;  5C5B B;  4BNE A;  3OK8 A;  3Q0K A;  3SYV A;  4DYL A;  3LLL A;  3CAZ A;  1Y2O A;  2EFK A;  3ABH A;  2X3X A;  3G9G A;  4NSW A;  3HAI A;  4AKV A;  4AVM A;  1I49 A;  2D4C A;  3DYT A;  3Q84 A;  3QNI A;  2Q12 A;  2Z0N A;  2RAK A;  2D1L A;  1I4L A;  3HAJ A;  4DCN C;  1X03 A;  2EFL A;  2Z0O A;  3I2W A;  4ATM A;  2X3V A;  1WDZ A;  2RAJ A;  1ZWW A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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