1ENWA

Elongation factor tfiis domain ii
Total Genus 16

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
16
sequence length
114
structure length
114
Chain Sequence
GSHMPRNSKNDGVDTAIYHHKLRDQVLKALYDVLAKESEHPPQSILHTAKAIESEMNKVNNCDTNEAAYKARYRIIYSNVISKNNPDLKHKIANGDITPEFLATCDAKDLAPAP

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
TIV1 (6-9)AH2 (45-53)TIV8 (42-45)TI2 (55-58)TIV9 (53-56)TIV11 (57-60)TIV12 (60-63)AH3 (66-82)TIV14 (62-65)EMPTY3H1 (91-93)TIV16 (85-88)TI3 (87-90)TI5 (94-97)3H2 (107-109)AH4 (101-106)AH1 (22-37)Updating...
connected with : NaN
molecule tags Transcription
source organism Saccharomyces cerevisiae
publication title Elongation factor TFIIS contains three structural domains: solution structure of domain II.
pubmed doi rcsb
molecule keywords TRANSCRIPTION ELONGATION FACTOR S-II
total genus 16
structure length 114
sequence length 114
ec nomenclature
pdb deposition date 2000-03-21
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.472.30 Mainly Alpha Orthogonal Bundle Cyclin A; domain 1 Transcription elongation factor S-II, central domain 1enwA00
3PO3S 2LW4A 4BY1X 4BY7X 1ENWA 3GTMS 4BXXX 2DMEA 3NDQA
chains in the Genus database with same CATH superfamily
3A8GB 1H24B 4EOIB 2ZPBB 1O9KB 3TNWB 1QMZB 3BLRB 3TW6A 3QYEA 4OGRB 4CFWB 4I3ZB 1D3UB 4EOQB 3HBLA 5EJCA 2WEVB 3QHWB 4MFDA 1URCB 4ROEA 2ZPEB 1JOWA 5CEIB 2V22B 3MY5B 1UGSB 4CFMB 2WMAB 4BCIB 2WIPB 2DPPB 4BCQB 1H25B 2CZ1B 1AHJB 4BCFB 2ZPIB 3DDQB 4BCMD 1BU2A 3DTOA 4BCNB 2X1NB 3BG9A 5CYIB 1XO2A 1GUXA 1H1QB 4EOLB 1UNHD 4IMYB 4OB0B 4OB2B 4UN0A 5LQFB 4OR5B 2QDYB 2ZPHB 4CXAB 2QGSA 1V29B 2CZ7B 4F7NB 1GUXB 2ZPGB 4ELJA 4AKIA 2R7GA 2W99A 2WJ9A 1OL2B 1OL1B 4AI6A 3VYHB 4OB1B 5DQVA 1H1RB 4YC3B 5HBEB 2WMBB 4F6SB 4F6UB 2DD5B 3H4CA 3QYGB 3HZJA 3X20B 4EC9B 1H28B 4F70B 4F7SB 3X24B 4EOOB 5HVYB 3B57A 1O9KA 3WVDB 3QXEB 5HBHB 2DD4B 3PO3S 1F5QB 2PK2A 4FM4B 2C5VB 2W96A 3KHIA 3QWLA 2CZ6B 2G9XB 2ZZDB 3F5XB 4JX4A 2WIHB 2PHGA 2QDJA 3BG5A 2JGZB 1OIYB 5LMKB 4JX5A 4CFUD 1OKVB 1H27B 2IW6B 1W98B 5EFQB 2I53A 4ROCA 1OGUB 2C5XB 2DMEA 3BLHB 3DJBA 2BS4A 4MFEA 4CFNB 5IF1B 4JX6A 5IDPB 1PKDB 1C9BA 2UZDB 2W9FA 1AISB 4M6VA 5HQ0B 4CFXB 3EIDB 4YOOA 4BCOB 4YOSA 2CJMB 4EOMB 4G6LB 3VYGB 5BNJB 4KRDB 2CZ0B 4QSHA 1UGPB 2UZLB 4F7LB 2IW8B 3M03A 2PMIB 2BS2A 1VINA 5IDNB 4KRCB 2PK9B 4NSTB 2ZPFB 1JKWA 1H1PB 1OI9B 4CFUB 1ENWA 1G3NC 5L2WB 2W2HA 4EORB 2UZEB 2D0QB 4BY1X 3GTMS 4EOKB 4BCJB 2UZBB 4HNVA 1GH6B 3VKHA 4Y72B 3DOGB 4NC6A 1KXUA 2WFYB 2WPAB 3MIAB 1E7PA 2PJQA 2DXBB 4RODA 2CYZB 4EC8B 2CCIB 1OKWB 3A8OB 3X25B 4BXXX 5FGKB 3A8HB 2KR6A 2W9ZA 3MY1B 3DDPB 1UGQB 4ZGJB 4TTHA 4AKGA 1N4MA 4BCKB 4HNTA 1GY3B 1FKMA 3X28B 2IW9B 1H1SB 4MIMA 3TN8B 2CCHB 1E9HB 3QYHB 1H26B 4II5B 2IVXA 2WHBB 3BHUB 3POMA 4ELLA 3X26B 4Z6YA 4EONB 4EOSB 2DXCB 4HNUA 4FX3B 2B9RA 2BKZB 4EOJB 1VYWB 3MI9B 3TNHB 3VKGA 4AKHA 3QHRB 3HHTB 4BCHB 4LOCA 3BHTB 1IREB 2QFZA 1UGRB 3EOCB 3A8MB 4YOZA 3O0GD 1ZP2A 4ZGDB 1P5EB 4BBSM 1H4LD 4ZGEB 5IHYA 4BCPB 1UNGD 3BLQB 3HO8A 4CFVB 1TD6A 3EJ1B 1VOLA 1OIUB 4OB3B 4BCGB 3WVEB 5DQWA 1QLBA 2ZCFB 4HLQA 3BHVB 5ACBA 1JSUB 3A8LB 2C6TB 5I5ZB 2C4GB 3DL1A 3BG3A 2C5NB 4CRLB 4F7JB 1JSTB 2C5OB 4F6WB 2LW4A 2I40B 5HNBB 1FINB 2UUEB 3G33B 2EUFA 1TFBA 2BPMB 3LQ5B 2IN3A 2QQ8A 2QF7A 2G77A 4BCQD 3QZ9B 2KMGA 3QZ5B 5HBJB 4BCND 1FVVB 4HL4A 3HB9A 4BY7X 4BCMB 2WXVB 1UNLD 4EOPB 3TNIB 3NDQA 2F2CA 4BBRM 3K7AM 3RGFB 3QYBA 3TW7A 2AHJB 2BS3A 1AD6A 5ICPB
chains in the Genus database with same CATH topology
3PO3S 2LW4A 4BY1X 4BY7X 1ENWA 3GTMS 4BXXX 2DMEA 3NDQA
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 3PO3 S;  2LW4 A;  4BY1 X;  4BY7 X;  1ENW A;  3GTM S;  4BXX X;  2DME A;  3NDQ A; 
#chains in the Genus database with same CATH topology
 3A8G B;  1H24 B;  4EOI B;  2ZPB B;  1O9K B;  3TNW B;  1QMZ B;  3BLR B;  3TW6 A;  3QYE A;  4OGR B;  4CFW B;  4I3Z B;  1D3U B;  4EOQ B;  3HBL A;  5EJC A;  2WEV B;  3QHW B;  4MFD A;  1URC B;  4ROE A;  2ZPE B;  1JOW A;  5CEI B;  2V22 B;  3MY5 B;  1UGS B;  4CFM B;  2WMA B;  4BCI B;  2WIP B;  2DPP B;  4BCQ B;  1H25 B;  2CZ1 B;  1AHJ B;  4BCF B;  2ZPI B;  3DDQ B;  4BCM D;  1BU2 A;  3DTO A;  4BCN B;  2X1N B;  3BG9 A;  5CYI B;  1XO2 A;  1GUX A;  1H1Q B;  4EOL B;  1UNH D;  4IMY B;  4OB0 B;  4OB2 B;  4UN0 A;  5LQF B;  4OR5 B;  2QDY B;  2ZPH B;  4CXA B;  2QGS A;  1V29 B;  2CZ7 B;  4F7N B;  1GUX B;  2ZPG B;  4ELJ A;  4AKI A;  2R7G A;  2W99 A;  2WJ9 A;  1OL2 B;  1OL1 B;  4AI6 A;  3VYH B;  4OB1 B;  5DQV A;  1H1R B;  4YC3 B;  5HBE B;  2WMB B;  4F6S B;  4F6U B;  2DD5 B;  3H4C A;  3QYG B;  3HZJ A;  3X20 B;  4EC9 B;  1H28 B;  4F70 B;  4F7S B;  3X24 B;  4EOO B;  5HVY B;  3B57 A;  1O9K A;  3WVD B;  3QXE B;  5HBH B;  2DD4 B;  3PO3 S;  1F5Q B;  2PK2 A;  4FM4 B;  2C5V B;  2W96 A;  3KHI A;  3QWL A;  2CZ6 B;  2G9X B;  2ZZD B;  3F5X B;  4JX4 A;  2WIH B;  2PHG A;  2QDJ A;  3BG5 A;  2JGZ B;  1OIY B;  5LMK B;  4JX5 A;  4CFU D;  1OKV B;  1H27 B;  2IW6 B;  1W98 B;  5EFQ B;  2I53 A;  4ROC A;  1OGU B;  2C5X B;  2DME A;  3BLH B;  3DJB A;  2BS4 A;  4MFE A;  4CFN B;  5IF1 B;  4JX6 A;  5IDP B;  1PKD B;  1C9B A;  2UZD B;  2W9F A;  1AIS B;  4M6V A;  5HQ0 B;  4CFX B;  3EID B;  4YOO A;  4BCO B;  4YOS A;  2CJM B;  4EOM B;  4G6L B;  3VYG B;  5BNJ B;  4KRD B;  2CZ0 B;  4QSH A;  1UGP B;  2UZL B;  4F7L B;  2IW8 B;  3M03 A;  2PMI B;  2BS2 A;  1VIN A;  5IDN B;  4KRC B;  2PK9 B;  4NST B;  2ZPF B;  1JKW A;  1H1P B;  1OI9 B;  4CFU B;  1ENW A;  1G3N C;  5L2W B;  2W2H A;  4EOR B;  2UZE B;  2D0Q B;  4BY1 X;  3GTM S;  4EOK B;  4BCJ B;  2UZB B;  4HNV A;  1GH6 B;  3VKH A;  4Y72 B;  3DOG B;  4NC6 A;  1KXU A;  2WFY B;  2WPA B;  3MIA B;  1E7P A;  2PJQ A;  2DXB B;  4ROD A;  2CYZ B;  4EC8 B;  2CCI B;  1OKW B;  3A8O B;  3X25 B;  4BXX X;  5FGK B;  3A8H B;  2KR6 A;  2W9Z A;  3MY1 B;  3DDP B;  1UGQ B;  4ZGJ B;  4TTH A;  4AKG A;  1N4M A;  4BCK B;  4HNT A;  1GY3 B;  1FKM A;  3X28 B;  2IW9 B;  1H1S B;  4MIM A;  3TN8 B;  2CCH B;  1E9H B;  3QYH B;  1H26 B;  4II5 B;  2IVX A;  2WHB B;  3BHU B;  3POM A;  4ELL A;  3X26 B;  4Z6Y A;  4EON B;  4EOS B;  2DXC B;  4HNU A;  4FX3 B;  2B9R A;  2BKZ B;  4EOJ B;  1VYW B;  3MI9 B;  3TNH B;  3VKG A;  4AKH A;  3QHR B;  3HHT B;  4BCH B;  4LOC A;  3BHT B;  1IRE B;  2QFZ A;  1UGR B;  3EOC B;  3A8M B;  4YOZ A;  3O0G D;  1ZP2 A;  4ZGD B;  1P5E B;  4BBS M;  1H4L D;  4ZGE B;  5IHY A;  4BCP B;  1UNG D;  3BLQ B;  3HO8 A;  4CFV B;  1TD6 A;  3EJ1 B;  1VOL A;  1OIU B;  4OB3 B;  4BCG B;  3WVE B;  5DQW A;  1QLB A;  2ZCF B;  4HLQ A;  3BHV B;  5ACB A;  1JSU B;  3A8L B;  2C6T B;  5I5Z B;  2C4G B;  3DL1 A;  3BG3 A;  2C5N B;  4CRL B;  4F7J B;  1JST B;  2C5O B;  4F6W B;  2LW4 A;  2I40 B;  5HNB B;  1FIN B;  2UUE B;  3G33 B;  2EUF A;  1TFB A;  2BPM B;  3LQ5 B;  2IN3 A;  2QQ8 A;  2QF7 A;  2G77 A;  4BCQ D;  3QZ9 B;  2KMG A;  3QZ5 B;  5HBJ B;  4BCN D;  1FVV B;  4HL4 A;  3HB9 A;  4BY7 X;  4BCM B;  2WXV B;  1UNL D;  4EOP B;  3TNI B;  3NDQ A;  2F2C A;  4BBR M;  3K7A M;  3RGF B;  3QYB A;  3TW7 A;  2AHJ B;  2BS3 A;  1AD6 A;  5ICP B; 
#chains in the Genus database with same CATH homology
 3PO3 S;  2LW4 A;  4BY1 X;  4BY7 X;  1ENW A;  3GTM S;  4BXX X;  2DME A;  3NDQ A;
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...
How to cite
Application loaded.