2C08A

Rat endophilin a1 bar domain
Total Genus 73
20406080100120140160180010203040506070
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
73
sequence length
204
structure length
204
Chain Sequence
EGTKLDDDFKEMERKVDVTSRAVMEIMTKTIEYLQPNPASRAKPQAEALLAEAMLKFGRELGDDCNFGPALGEVGEAMRELSEVKDSLDMEVKQNFIDPLQNLHDKDLREIQHHLKKLEGRRLDFDYKKKRQGKIPDEELRQALEKFDESKEIAESSMFNLLEMDIEQVSQLSALVQAQLEYHKQAVQILQQVTVRLEERIRQA

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTIV1 (62-65)AH4 (109-174)TI3 (175-178)TI2 (174-177)AH5 (180-199)AH2 (52-58)TI1 (61-64)AH1 (31-47)AH3 (89-104)Updating...
connected with : NaN
molecule tags Transferase
source organism Rattus norvegicus
publication title Mechanism of Endophilin N-Bar Domain-Mediated Membrane Curvature.
pubmed doi rcsb
molecule keywords SH3-CONTAINING GRB2-LIKE PROTEIN 2
total genus 73
structure length 204
sequence length 204
ec nomenclature ec 2.3.1.-:
pdb deposition date 2005-08-26
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1270.60 Mainly Alpha Up-down Bundle Substrate Binding Domain Of Dnak; Chain:A; Domain 2 Arfaptin homology (AH) domain/BAR domain 2c08A00
3ABHA 2X3XA 4NQIA 1I4DA 3PLTA 4AKVA 1I4TA 2EFKA 2RAKA 1Y2OA 3CAZA 3DYTA 1URUA 3OK8A 1I4LA 3HAJA 2Q13A 2X3WA 4I1QA 3I2WA 3Q0KA 1X04A 3QNIA 4NSWA 2D1LA 2C08A 3SOGA 4WPEA 3HAIA 3M3WA 3Q84A 2Z0NA 3HAHA 2Z0VA 1WDZA 5C5BA 4ATMA 2RAIA 2X3VA 4BNEA 2EFLA 1ZWWA 3QWEA 4DYLA 2ELBA 3SYVA 3LLLA 4AVMA 1I49A 3QE6A 2YKTA 2FICA 2D4CA 2Q12A 5C5BB 4H8SA 2V0OA 4WPCA 2RAJA 2Z0OA 3ACOA 4FZSA 1X03A 4DCNC 3G9GA
chains in the Genus database with same CATH superfamily
3I04A 2EWFA 1E1DA 1URUA 3Q0KA 2D1LA 2F7OA 3HAHA 4EZPA 4EZSA 3VKHA 4HR1B 2QFFA 2QXLA 3D51A 1PS3A 3T4AG 4AZ6A 5FIGA 3QNJA 2N3KA 3T49A 3ZEDA 4G6QA 4IW0A 1W9MA 1OA1A 3DDGA 3EJUA 4JN4A 4ATMA 1SU7A 2GAFD 1ZWWA 3I39X 3B51X 3G9GA 2X3XA 3CVRA 1R5EA 3CAZA 2X3WA 3HAIA 3LMFA 3KAWA 2YIBA 4EZTA 2OBMA 1GN9A 4IWQA 3ABHA 2GA9D 4UDXX 2RT6A 3BVXA 2EX3B 1TQUA 4D8JA 4H6IA 5TKYA 4IM2A 2YL8A 3EJRA 3QWEA 2YLLA 2F18A 2PMRA 4R5KA 3PLTA 4R5LA 1I4TA 1I4LA 3SOGA 3RV1A 1YWMA 3OWGA 3VEBA 3T47A 5C5BA 2RAIA 4R5GA 3D2EA 3B53X 4KIKB 3BVVA 3EJPA 1I4DA 2LXYA 3I01A 3CKDA 4NSWA 1TQWA 3QA8A 2JNSA 4AZCB 4AZBA 1TQTA 4NPHA 4KIKA 4EZZA 3LLLA 3F7WA 4BNEA 2O0I1 1TQVA 4EZQA 3D4ZA 4AZCA 1OAOA 1JQKA 4EZOA 3UITA 1SU8A 2OW6A 3BVUA 3O3MB 3D2FA 2NCZA 4WPCA 2GF4A 4B9QA 2YLAA 3BVTA 3T48A 4AZ5A 1X04A 4E81A 4JNFA 4HYBA 4EZUA 4JWCA 2Z0VA 2OO2A 3EJQA 2MI7A 2QKWA 2YIAA 3O3OB 1HTYA 4H8SA 3ACOA 4H6HA 2YI8A 2PY6A 3DX0A 2C08A 2KHOA 3Q84A 4JNEA 2ELBA 2YL5A 5C5BB 3RPMA 3KAVA 3L3OM 3CV5A 2YL6A 3A98A 2LM0A 1O7DC 4JWIA 3FD9A 3KDRA 3RV0A 4PO2A 2Z0NA 3T46A 1DKZA 3DX2A 3C7NA 1I49A 3EJSA 5FLEX 2F1AA 2RAJA 4E3CA 1DKYA 4FM3A 3EJTA 3CZNA 2ND0A 3DX3A 3DPPA 4IWOA 3B52X 1O7DB 3BUQA 1QX1A 1QWUA 3D4YA 2F1BA 4AVMA 4FZOA 1E2UA 3QE6A 5KBPA 1SUFA 3DX1A 4JWDA 1HXKA 3QNIA 4HY9A 2WYHA 4EZXA 1R34A 2YI9A 1HWWA 3BVWA 3DPOA 3O3NB 4AZIA 4IWPA 4AZ7A 3BUDA 3D52A 4EZNA 3SYVA 3GI7A 2FICA 4F00A 1GNTA 1ZYLA 2ALWA 2V0OA 4AZHA 2OZNB 5E84A 4NQIA 4EZYA 4AKVA 2EFKA 2RAKA 1Y2OA 3DPQA 2WINM 2ND1A 4HR1A 2YIVX 3OHXM 1UPXA 4EZVA 1E9VA 2YL9A 4JWEA 1OA0A 4DYLA 2Z0OA 4M0MA 2F7QA 2OBLA 3BLBA 3ER8C 2ZXQA 2FYVA 4I1QA 3ERCC 2X3VA 2X5CA 2EFLA 3DX4A 4EZWA 1SU6A 3L3PA 4AZGA 3VEAA 4JL9A 1U00A 4WPEA 1R33A 4IM0A 1LQ7A 4R5JA 1GNLA 2Z8YA 2Q13A 3HAJA 3M3WA 3D50A 2JNKA 2F7RA 4IM3A 1WDZA 3DDFA 2OW7A 4JLCA 1MJGA 4EZRA 2D4CA 2Q12A 1TQSA 4R5IA 3ER9B 4FZSA 1X03A 3CZSA 4DCNC 4F01A 2WYIA 2F7PA 3DYTA 3OK8A 3BUBA 3BUIA 3I2WA 4FZPA 1QWNA 4UDYX 3BUPA 3LVTA 1DKXA 2YKTA
chains in the Genus database with same CATH topology
3ABHA 2X3XA 4NQIA 1I4DA 3PLTA 4AKVA 1I4TA 2EFKA 2RAKA 1Y2OA 3CAZA 3DYTA 1URUA 3OK8A 1I4LA 3HAJA 2Q13A 2X3WA 4I1QA 3I2WA 3Q0KA 1X04A 3QNIA 4NSWA 2D1LA 2C08A 3SOGA 4WPEA 3HAIA 3M3WA 3Q84A 2Z0NA 3HAHA 2Z0VA 1WDZA 5C5BA 4ATMA 2RAIA 2X3VA 4BNEA 2EFLA 1ZWWA 3QWEA 4DYLA 2ELBA 3SYVA 3LLLA 4AVMA 1I49A 3QE6A 2YKTA 2FICA 2D4CA 2Q12A 5C5BB 4H8SA 2V0OA 4WPCA 2RAJA 2Z0OA 3ACOA 4FZSA 1X03A 4DCNC 3G9GA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3ABH A;  2X3X A;  4NQI A;  1I4D A;  3PLT A;  4AKV A;  1I4T A;  2EFK A;  2RAK A;  1Y2O A;  3CAZ A;  3DYT A;  1URU A;  3OK8 A;  1I4L A;  3HAJ A;  2Q13 A;  2X3W A;  4I1Q A;  3I2W A;  3Q0K A;  1X04 A;  3QNI A;  4NSW A;  2D1L A;  2C08 A;  3SOG A;  4WPE A;  3HAI A;  3M3W A;  3Q84 A;  2Z0N A;  3HAH A;  2Z0V A;  1WDZ A;  5C5B A;  4ATM A;  2RAI A;  2X3V A;  4BNE A;  2EFL A;  1ZWW A;  3QWE A;  4DYL A;  2ELB A;  3SYV A;  3LLL A;  4AVM A;  1I49 A;  3QE6 A;  2YKT A;  2FIC A;  2D4C A;  2Q12 A;  5C5B B;  4H8S A;  2V0O A;  4WPC A;  2RAJ A;  2Z0O A;  3ACO A;  4FZS A;  1X03 A;  4DCN C;  3G9G A; 
#chains in the Genus database with same CATH topology
 3I04 A;  2EWF A;  1E1D A;  1URU A;  3Q0K A;  2D1L A;  2F7O A;  3HAH A;  4EZP A;  4EZS A;  3VKH A;  4HR1 B;  2QFF A;  2QXL A;  3D51 A;  1PS3 A;  3T4A G;  4AZ6 A;  5FIG A;  3QNJ A;  2N3K A;  3T49 A;  3ZED A;  4G6Q A;  4IW0 A;  1W9M A;  1OA1 A;  3DDG A;  3EJU A;  4JN4 A;  4ATM A;  1SU7 A;  2GAF D;  1ZWW A;  3I39 X;  3B51 X;  3G9G A;  2X3X A;  3CVR A;  1R5E A;  3CAZ A;  2X3W A;  3HAI A;  3LMF A;  3KAW A;  2YIB A;  4EZT A;  2OBM A;  1GN9 A;  4IWQ A;  3ABH A;  2GA9 D;  4UDX X;  2RT6 A;  3BVX A;  2EX3 B;  1TQU A;  4D8J A;  4H6I A;  5TKY A;  4IM2 A;  2YL8 A;  3EJR A;  3QWE A;  2YLL A;  2F18 A;  2PMR A;  4R5K A;  3PLT A;  4R5L A;  1I4T A;  1I4L A;  3SOG A;  3RV1 A;  1YWM A;  3OWG A;  3VEB A;  3T47 A;  5C5B A;  2RAI A;  4R5G A;  3D2E A;  3B53 X;  4KIK B;  3BVV A;  3EJP A;  1I4D A;  2LXY A;  3I01 A;  3CKD A;  4NSW A;  1TQW A;  3QA8 A;  2JNS A;  4AZC B;  4AZB A;  1TQT A;  4NPH A;  4KIK A;  4EZZ A;  3LLL A;  3F7W A;  4BNE A;  2O0I 1;  1TQV A;  4EZQ A;  3D4Z A;  4AZC A;  1OAO A;  1JQK A;  4EZO A;  3UIT A;  1SU8 A;  2OW6 A;  3BVU A;  3O3M B;  3D2F A;  2NCZ A;  4WPC A;  2GF4 A;  4B9Q A;  2YLA A;  3BVT A;  3T48 A;  4AZ5 A;  1X04 A;  4E81 A;  4JNF A;  4HYB A;  4EZU A;  4JWC A;  2Z0V A;  2OO2 A;  3EJQ A;  2MI7 A;  2QKW A;  2YIA A;  3O3O B;  1HTY A;  4H8S A;  3ACO A;  4H6H A;  2YI8 A;  2PY6 A;  3DX0 A;  2C08 A;  2KHO A;  3Q84 A;  4JNE A;  2ELB A;  2YL5 A;  5C5B B;  3RPM A;  3KAV A;  3L3O M;  3CV5 A;  2YL6 A;  3A98 A;  2LM0 A;  1O7D C;  4JWI A;  3FD9 A;  3KDR A;  3RV0 A;  4PO2 A;  2Z0N A;  3T46 A;  1DKZ A;  3DX2 A;  3C7N A;  1I49 A;  3EJS A;  5FLE X;  2F1A A;  2RAJ A;  4E3C A;  1DKY A;  4FM3 A;  3EJT A;  3CZN A;  2ND0 A;  3DX3 A;  3DPP A;  4IWO A;  3B52 X;  1O7D B;  3BUQ A;  1QX1 A;  1QWU A;  3D4Y A;  2F1B A;  4AVM A;  4FZO A;  1E2U A;  3QE6 A;  5KBP A;  1SUF A;  3DX1 A;  4JWD A;  1HXK A;  3QNI A;  4HY9 A;  2WYH A;  4EZX A;  1R34 A;  2YI9 A;  1HWW A;  3BVW A;  3DPO A;  3O3N B;  4AZI A;  4IWP A;  4AZ7 A;  3BUD A;  3D52 A;  4EZN A;  3SYV A;  3GI7 A;  2FIC A;  4F00 A;  1GNT A;  1ZYL A;  2ALW A;  2V0O A;  4AZH A;  2OZN B;  5E84 A;  4NQI A;  4EZY A;  4AKV A;  2EFK A;  2RAK A;  1Y2O A;  3DPQ A;  2WIN M;  2ND1 A;  4HR1 A;  2YIV X;  3OHX M;  1UPX A;  4EZV A;  1E9V A;  2YL9 A;  4JWE A;  1OA0 A;  4DYL A;  2Z0O A;  4M0M A;  2F7Q A;  2OBL A;  3BLB A;  3ER8 C;  2ZXQ A;  2FYV A;  4I1Q A;  3ERC C;  2X3V A;  2X5C A;  2EFL A;  3DX4 A;  4EZW A;  1SU6 A;  3L3P A;  4AZG A;  3VEA A;  4JL9 A;  1U00 A;  4WPE A;  1R33 A;  4IM0 A;  1LQ7 A;  4R5J A;  1GNL A;  2Z8Y A;  2Q13 A;  3HAJ A;  3M3W A;  3D50 A;  2JNK A;  2F7R A;  4IM3 A;  1WDZ A;  3DDF A;  2OW7 A;  4JLC A;  1MJG A;  4EZR A;  2D4C A;  2Q12 A;  1TQS A;  4R5I A;  3ER9 B;  4FZS A;  1X03 A;  3CZS A;  4DCN C;  4F01 A;  2WYI A;  2F7P A;  3DYT A;  3OK8 A;  3BUB A;  3BUI A;  3I2W A;  4FZP A;  1QWN A;  4UDY X;  3BUP A;  3LVT A;  1DKX A;  2YKT A; 
#chains in the Genus database with same CATH homology
 3ABH A;  2X3X A;  4NQI A;  1I4D A;  3PLT A;  4AKV A;  1I4T A;  2EFK A;  2RAK A;  1Y2O A;  3CAZ A;  3DYT A;  1URU A;  3OK8 A;  1I4L A;  3HAJ A;  2Q13 A;  2X3W A;  4I1Q A;  3I2W A;  3Q0K A;  1X04 A;  3QNI A;  4NSW A;  2D1L A;  2C08 A;  3SOG A;  4WPE A;  3HAI A;  3M3W A;  3Q84 A;  2Z0N A;  3HAH A;  2Z0V A;  1WDZ A;  5C5B A;  4ATM A;  2RAI A;  2X3V A;  4BNE A;  2EFL A;  1ZWW A;  3QWE A;  4DYL A;  2ELB A;  3SYV A;  3LLL A;  4AVM A;  1I49 A;  3QE6 A;  2YKT A;  2FIC A;  2D4C A;  2Q12 A;  5C5B B;  4H8S A;  2V0O A;  4WPC A;  2RAJ A;  2Z0O A;  3ACO A;  4FZS A;  1X03 A;  4DCN C;  3G9G A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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