2D4CA

Crystal structure of the endophilin bar domain mutant
Total Genus 99

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
99
sequence length
241
structure length
224
Chain Sequence
HKATQKVSEKVGGAEGTKLDDDFKEMERKVDVTSRAVMEIMTKTIEYLQPNPASRAKLYPQAEALLAEAMLKFGRELGDDCNFGPALGEVGEAMRELSEVKDSLDIEVKQNFIDPLQNLHDKDLREIQSALQHHLKKLEGRRLDFDYKKKRQGKIPDEELRQALEKFDESKEIAESSMFNLLEMDIEQVSQLSALVQAQLEYHKQAVQILQQVTVRLEERIRQA

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (12-22)AH4 (109-179)AH2 (24-58)AH5 (184-250)AH3 (89-104)TIV2 (105-108)EMPTY3H1 (62-64)TIV1 (65-68)TIV3 (179-182)Updating...
connected with : NaN
molecule tags Transferase
source organism Homo sapiens
publication title Endophilin BAR domain drives membrane curvature by two newly identified structure-based mechanisms
pubmed doi rcsb
molecule keywords SH3-containing GRB2-like protein 2
total genus 99
structure length 224
sequence length 241
chains with identical sequence B, C, D
ec nomenclature ec 2.3.1.-:
pdb deposition date 2005-10-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03114 BAR BAR domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1270.60 Mainly Alpha Up-down Bundle Substrate Binding Domain Of Dnak; Chain:A; Domain 2 Arfaptin homology (AH) domain/BAR domain 2d4cA00
3ACOA 2Z0NA 3QE6A 3PLTA 2EFLA 2D1LA 2EFKA 2X3XA 2RAIA 2D4CA 3I2WA 1I49A 3Q0KA 4BNEA 2YKTA 2Z0VA 3ABHA 1I4LA 1X03A 5C5BB 1URUA 4DCNC 3CAZA 4NQIA 5C5BA 2X3WA 4H8SA 1X04A 4WPEA 3LLLA 2FICA 3QNIA 4NSWA 1ZWWA 1I4DA 4DYLA 4ATMA 2C08A 2Q13A 3Q84A 4FZSA 3SOGA 2X3VA 4AVMA 3QWEA 3DYTA 2RAJA 3OK8A 2Q12A 2V0OA 3M3WA 2Z0OA 3HAIA 2RAKA 3SYVA 4AKVA 3HAJA 4I1QA 4WPCA 1Y2OA 3HAHA 1I4TA 3G9GA 1WDZA 2ELBA
chains in the Genus database with same CATH superfamily
1OAOA 3DX4A 2EX3B 4EZWA 2YL9A 4HR1B 1DKZA 4EZZA 2QXLA 4JNEA 3GI7A 2WINM 4JL9A 2Q13A 4FM3A 3BUBA 1I4TA 5TKYA 3ACOA 3B51X 2YI8A 4AZIA 5KBPA 4AZ5A 2X3WA 2F7RA 2FICA 4IW0A 3CV5A 3A98A 1GNLA 2O0I1 4B9QA 1LQ7A 3T4AG 1TQTA 2EFKA 2PMRA 3B52X 3FD9A 2WYIA 4NPHA 4JWIA 4NSWA 1UPXA 4DYLA 3SOGA 3BUPA 2JNKA 3CZNA 3BUIA 3HAJA 4AZ6A 5FIGA 4BNEA 1SUFA 2RT6A 4EZTA 2YIVX 4JWCA 4IWOA 3Q84A 3BVWA 3QA8A 1TQWA 4UDXX 3QE6A 5C5BA 2JNSA 2YIBA 3D2EA 4H8SA 3BVUA 2GAFD 2Z8YA 4ATMA 3D51A 3RPMA 1OA0A 4KIKB 3BUQA 3RV0A 4I1QA 2F1AA 1I4DA 3LMFA 2F7QA 3DX0A 4EZXA 2Z0VA 1HXKA 3DDFA 2EWFA 3T47A 1O7DB 3EJUA 3RV1A 3LVTA 4M0MA 4EZNA 3OK8A 2Z0OA 3C7NA 3T48A 5E84A 4IWPA 3DX1A 4IWQA 3BVXA 2Z0NA 3DPQA 3DX2A 1URUA 3DPOA 2OZNB 4JNFA 4HR1A 4WPEA 4E3CA 1O7DC 4HYBA 1HWWA 2N3KA 3O3OB 4F01A 3DPPA 1R34A 1TQVA 3ABHA 1W9MA 4R5LA 3D50A 2GA9D 3BVTA 2F7PA 4H6HA 3I39X 4EZYA 4EZRA 3I04A 3SYVA 1GNTA 2YI9A 1YWMA 2F1BA 2QKWA 2ELBA 2GF4A 1OA1A 3VEAA 3CZSA 5FLEX 3DDGA 3BUDA 3O3MB 3F7WA 3HAIA 2NCZA 3KDRA 3D4YA 4EZSA 3CVRA 3EJQA 3L3OM 1ZYLA 4FZOA 4R5JA 2RAIA 1I4LA 2YLLA 2F18A 3LLLA 1ZWWA 3I01A 4FZSA 4AZCA 4EZPA 2MI7A 2OBLA 2ND0A 4FZPA 1QX1A 1R33A 1PS3A 2OW7A 1E9VA 3Q0KA 3ER8C 2YKTA 4JWEA 2LM0A 3O3NB 4JLCA 1R5EA 4R5GA 1JQKA 4D8JA 3DYTA 1SU6A 4G6QA 4AKVA 4KIKA 3HAHA 3L3PA 3G9GA 3KAVA 3ERCC 1I49A 4JWDA 2ND1A 3BLBA 1X04A 1QWNA 4PO2A 2X5CA 2X3VA 3QWEA 2Q12A 2V0OA 3M3WA 3VEBA 2KHOA 1GN9A 1Y2OA 3CAZA 3EJPA 4DCNC 2YLAA 3T49A 2YL6A 4AZGA 1TQUA 4JN4A 1DKXA 3D4ZA 1E2UA 4EZUA 2YL5A 4IM2A 3D52A 2QFFA 4WPCA 3VKHA 1SU8A 3D2FA 2D4CA 4R5IA 4IM3A 2OBMA 2OW6A 4NQIA 4F00A 3QNIA 3EJTA 3ER9B 1E1DA 3QNJA 4EZOA 2WYHA 1WDZA 3ZEDA 2ALWA 2F7OA 2YIAA 3PLTA 4AZBA 1MJGA 2D1LA 2X3XA 3I2WA 1X03A 5C5BB 1QWUA 3T46A 4H6IA 1HTYA 3EJSA 3B53X 3DX3A 4IM0A 4AZCB 4AVMA 4AZ7A 2FYVA 4E81A 2RAKA 4UDYX 2PY6A 3CKDA 1U00A 2ZXQA 4EZVA 2EFLA 3OHXM 3OWGA 4EZQA 4HY9A 1DKYA 2LXYA 1TQSA 3UITA 2OO2A 3KAWA 4AZHA 3BVVA 2C08A 1SU7A 2RAJA 4R5KA 3EJRA 2YL8A
chains in the Genus database with same CATH topology
3ACOA 2Z0NA 3QE6A 3PLTA 2EFLA 2D1LA 2EFKA 2X3XA 2RAIA 2D4CA 3I2WA 1I49A 3Q0KA 4BNEA 2YKTA 2Z0VA 3ABHA 1I4LA 1X03A 5C5BB 1URUA 4DCNC 3CAZA 4NQIA 5C5BA 2X3WA 4H8SA 1X04A 4WPEA 3LLLA 2FICA 3QNIA 4NSWA 1ZWWA 1I4DA 4DYLA 4ATMA 2C08A 2Q13A 3Q84A 4FZSA 3SOGA 2X3VA 4AVMA 3QWEA 3DYTA 2RAJA 3OK8A 2Q12A 2V0OA 3M3WA 2Z0OA 3HAIA 2RAKA 3SYVA 4AKVA 3HAJA 4I1QA 4WPCA 1Y2OA 3HAHA 1I4TA 3G9GA 1WDZA 2ELBA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3ACO A;  2Z0N A;  3QE6 A;  3PLT A;  2EFL A;  2D1L A;  2EFK A;  2X3X A;  2RAI A;  2D4C A;  3I2W A;  1I49 A;  3Q0K A;  4BNE A;  2YKT A;  2Z0V A;  3ABH A;  1I4L A;  1X03 A;  5C5B B;  1URU A;  4DCN C;  3CAZ A;  4NQI A;  5C5B A;  2X3W A;  4H8S A;  1X04 A;  4WPE A;  3LLL A;  2FIC A;  3QNI A;  4NSW A;  1ZWW A;  1I4D A;  4DYL A;  4ATM A;  2C08 A;  2Q13 A;  3Q84 A;  4FZS A;  3SOG A;  2X3V A;  4AVM A;  3QWE A;  3DYT A;  2RAJ A;  3OK8 A;  2Q12 A;  2V0O A;  3M3W A;  2Z0O A;  3HAI A;  2RAK A;  3SYV A;  4AKV A;  3HAJ A;  4I1Q A;  4WPC A;  1Y2O A;  3HAH A;  1I4T A;  3G9G A;  1WDZ A;  2ELB A; 
#chains in the Genus database with same CATH topology
 1OAO A;  3DX4 A;  2EX3 B;  4EZW A;  2YL9 A;  4HR1 B;  1DKZ A;  4EZZ A;  2QXL A;  4JNE A;  3GI7 A;  2WIN M;  4JL9 A;  2Q13 A;  4FM3 A;  3BUB A;  1I4T A;  5TKY A;  3ACO A;  3B51 X;  2YI8 A;  4AZI A;  5KBP A;  4AZ5 A;  2X3W A;  2F7R A;  2FIC A;  4IW0 A;  3CV5 A;  3A98 A;  1GNL A;  2O0I 1;  4B9Q A;  1LQ7 A;  3T4A G;  1TQT A;  2EFK A;  2PMR A;  3B52 X;  3FD9 A;  2WYI A;  4NPH A;  4JWI A;  4NSW A;  1UPX A;  4DYL A;  3SOG A;  3BUP A;  2JNK A;  3CZN A;  3BUI A;  3HAJ A;  4AZ6 A;  5FIG A;  4BNE A;  1SUF A;  2RT6 A;  4EZT A;  2YIV X;  4JWC A;  4IWO A;  3Q84 A;  3BVW A;  3QA8 A;  1TQW A;  4UDX X;  3QE6 A;  5C5B A;  2JNS A;  2YIB A;  3D2E A;  4H8S A;  3BVU A;  2GAF D;  2Z8Y A;  4ATM A;  3D51 A;  3RPM A;  1OA0 A;  4KIK B;  3BUQ A;  3RV0 A;  4I1Q A;  2F1A A;  1I4D A;  3LMF A;  2F7Q A;  3DX0 A;  4EZX A;  2Z0V A;  1HXK A;  3DDF A;  2EWF A;  3T47 A;  1O7D B;  3EJU A;  3RV1 A;  3LVT A;  4M0M A;  4EZN A;  3OK8 A;  2Z0O A;  3C7N A;  3T48 A;  5E84 A;  4IWP A;  3DX1 A;  4IWQ A;  3BVX A;  2Z0N A;  3DPQ A;  3DX2 A;  1URU A;  3DPO A;  2OZN B;  4JNF A;  4HR1 A;  4WPE A;  4E3C A;  1O7D C;  4HYB A;  1HWW A;  2N3K A;  3O3O B;  4F01 A;  3DPP A;  1R34 A;  1TQV A;  3ABH A;  1W9M A;  4R5L A;  3D50 A;  2GA9 D;  3BVT A;  2F7P A;  4H6H A;  3I39 X;  4EZY A;  4EZR A;  3I04 A;  3SYV A;  1GNT A;  2YI9 A;  1YWM A;  2F1B A;  2QKW A;  2ELB A;  2GF4 A;  1OA1 A;  3VEA A;  3CZS A;  5FLE X;  3DDG A;  3BUD A;  3O3M B;  3F7W A;  3HAI A;  2NCZ A;  3KDR A;  3D4Y A;  4EZS A;  3CVR A;  3EJQ A;  3L3O M;  1ZYL A;  4FZO A;  4R5J A;  2RAI A;  1I4L A;  2YLL A;  2F18 A;  3LLL A;  1ZWW A;  3I01 A;  4FZS A;  4AZC A;  4EZP A;  2MI7 A;  2OBL A;  2ND0 A;  4FZP A;  1QX1 A;  1R33 A;  1PS3 A;  2OW7 A;  1E9V A;  3Q0K A;  3ER8 C;  2YKT A;  4JWE A;  2LM0 A;  3O3N B;  4JLC A;  1R5E A;  4R5G A;  1JQK A;  4D8J A;  3DYT A;  1SU6 A;  4G6Q A;  4AKV A;  4KIK A;  3HAH A;  3L3P A;  3G9G A;  3KAV A;  3ERC C;  1I49 A;  4JWD A;  2ND1 A;  3BLB A;  1X04 A;  1QWN A;  4PO2 A;  2X5C A;  2X3V A;  3QWE A;  2Q12 A;  2V0O A;  3M3W A;  3VEB A;  2KHO A;  1GN9 A;  1Y2O A;  3CAZ A;  3EJP A;  4DCN C;  2YLA A;  3T49 A;  2YL6 A;  4AZG A;  1TQU A;  4JN4 A;  1DKX A;  3D4Z A;  1E2U A;  4EZU A;  2YL5 A;  4IM2 A;  3D52 A;  2QFF A;  4WPC A;  3VKH A;  1SU8 A;  3D2F A;  2D4C A;  4R5I A;  4IM3 A;  2OBM A;  2OW6 A;  4NQI A;  4F00 A;  3QNI A;  3EJT A;  3ER9 B;  1E1D A;  3QNJ A;  4EZO A;  2WYH A;  1WDZ A;  3ZED A;  2ALW A;  2F7O A;  2YIA A;  3PLT A;  4AZB A;  1MJG A;  2D1L A;  2X3X A;  3I2W A;  1X03 A;  5C5B B;  1QWU A;  3T46 A;  4H6I A;  1HTY A;  3EJS A;  3B53 X;  3DX3 A;  4IM0 A;  4AZC B;  4AVM A;  4AZ7 A;  2FYV A;  4E81 A;  2RAK A;  4UDY X;  2PY6 A;  3CKD A;  1U00 A;  2ZXQ A;  4EZV A;  2EFL A;  3OHX M;  3OWG A;  4EZQ A;  4HY9 A;  1DKY A;  2LXY A;  1TQS A;  3UIT A;  2OO2 A;  3KAW A;  4AZH A;  3BVV A;  2C08 A;  1SU7 A;  2RAJ A;  4R5K A;  3EJR A;  2YL8 A; 
#chains in the Genus database with same CATH homology
 3ACO A;  2Z0N A;  3QE6 A;  3PLT A;  2EFL A;  2D1L A;  2EFK A;  2X3X A;  2RAI A;  2D4C A;  3I2W A;  1I49 A;  3Q0K A;  4BNE A;  2YKT A;  2Z0V A;  3ABH A;  1I4L A;  1X03 A;  5C5B B;  1URU A;  4DCN C;  3CAZ A;  4NQI A;  5C5B A;  2X3W A;  4H8S A;  1X04 A;  4WPE A;  3LLL A;  2FIC A;  3QNI A;  4NSW A;  1ZWW A;  1I4D A;  4DYL A;  4ATM A;  2C08 A;  2Q13 A;  3Q84 A;  4FZS A;  3SOG A;  2X3V A;  4AVM A;  3QWE A;  3DYT A;  2RAJ A;  3OK8 A;  2Q12 A;  2V0O A;  3M3W A;  2Z0O A;  3HAI A;  2RAK A;  3SYV A;  4AKV A;  3HAJ A;  4I1Q A;  4WPC A;  1Y2O A;  3HAH A;  1I4T A;  3G9G A;  1WDZ A;  2ELB A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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