2DD4B

Thiocyanate hydrolase (scnase) from thiobacillus thioparus recombinant apo-enzyme
Total Genus 47

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
47
sequence length
152
structure length
152
Chain Sequence
SSIREEVHRHLGTVALMQPALHQQTHAPAPTEITHTLFRAYTRVPHDVGGEADVPIEYHEKEEEIWELNTFATCECLAWRGVWTAEERRRKQNCDVGQTVYLGMPYYGRWLLTAARILVDKQFVTLTELHNKIVEMRERVASGQGLGEYLPP

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
3H1 (16-19)AH2 (37-44)TII1 (50-53)TI1 (46-49)EMPTYAH3 (67-82)TIV2 (83-86)AH4 (87-96)TI2 (96-99)AH5 (100-105)AH6 (108-123)TVIII1 (124-127)3H2 (32-34)TIV1 (27-30)TII'1 (148-151)AH1 (4-15)AH7 (128-144)Updating...
connected with : NaN
molecule tags Hydrolase
source organism Thiobacillus thioparus
publication title Structure of thiocyanate hydrolase: a new nitrile hydratase family protein with a novel five-coordinate cobalt(III) center.
pubmed doi rcsb
molecule keywords Thiocyanate hydrolase alpha subunit
total genus 47
structure length 152
sequence length 152
chains with identical sequence E, H, K
ec nomenclature ec 3.5.5.8: Thiocyanate hydrolase.
pdb deposition date 2006-01-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF02211 NHase_beta Nitrile hydratase beta subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.472.20 Mainly Alpha Orthogonal Bundle Cyclin A; domain 1 Cyclin A; domain 1 2dd4B00
1UGSB 2ZPBB 2DPPB 2DD4B 4OB2B 3WVDB 3X20B 1IREB 2D0QB 2CZ0B 3A8OB 4OB3B 1V29B 3A8LB 4ZGJB 3A8HB 3VYGB 2ZPGB 2CZ1B 2ZPHB 3QXEB 4ZGEB 1UGPB 2ZCFB 3HHTB 3QZ9B 2ZPFB 3VYHB 3X24B 2DD5B 3WVEB 2QDYB 4OB0B 1UGQB 4FM4B 3X26B 2ZPIB 2DXCB 3QZ5B 2ZPEB 3X25B 3A8GB 2DXBB 4ZGDB 2AHJB 1UGRB 3A8MB 3QYHB 2CZ6B 3QYGB 2CYZB 2CZ7B 2ZZDB 4OB1B 3X28B 1AHJB
chains in the Genus database with same CATH superfamily
1GY3B 2UZEB 5LQFB 3TW6A 3A8LB 1C9BA 4BCIB 1AISB 2F2CA 2JGZB 3QHRB 2C5NB 4BY7X 1XO2A 4EC9B 2AHJB 4OGRB 3BLHB 3BG5A 1P5EB 4CFUB 2BS3A 3TW7A 1IREB 3BHTB 4HNVA 4Z6YA 3QXEB 4II5B 3MIAB 3VYHB 3HB9A 4BCMB 4AKIA 2ZPIB 5ICPB 1OIYB 3O0GD 1JOWA 3BG3A 4ROEA 1UGSB 2G9XB 4UN0A 1OI9B 4M6VA 3A8HB 1VINA 2W2HA 4CFMB 2ZPHB 4HNTA 3QZ9B 2WMBB 2C4GB 4BCQB 4AKGA 1OL2B 3EIDB 4CRLB 5CYIB 1AHJB 4BCHB 5HVYB 2WEVB 4CFUD 5IHYA 5DQWA 2I40B 4ZGJB 1N4MA 4ROCA 3BG9A 3HHTB 1UGQB 2PK2A 3X25B 2QQ8A 2BPMB 4BXXX 1UNLD 4F6SB 1H27B 4F7NB 2C5XB 1FVVB 2KMGA 3A8OB 2IW9B 4ZGEB 2WJ9A 4EOPB 1QMZB 4NC6A 3X26B 3QZ5B 2LW4A 4ZGDB 2UZLB 3TNIB 4KRDB 3HBLA 4YOZA 4BCQD 4F7JB 4EOJB 2X1NB 2DPPB 2IVXA 4YOOA 2CCIB 5LMKB 2WPAB 4EOMB 2BS2A 4EORB 3MY1B 4OR5B 1OKWB 3PO3S 2CJMB 3EOCB 4CFWB 1H4LD 3A8MB 4Y72B 3QYGB 1VYWB 1JKWA 1TFBA 2B9RA 3EJ1B 3TNWB 4EOKB 1H1QB 3X20B 4BCJB 3VYGB 5EFQB 4JX4A 1UGPB 4LOCA 3DDQB 1O9KA 3DTOA 4CFXB 4BCND 1H1SB 4BCFB 4EC8B 3LQ5B 3DL1A 3DDPB 5CEIB 3BLRB 4BY1X 1D3UB 4OB3B 3TNHB 1URCB 1ZP2A 2WFYB 2QDJA 2UZBB 3BHUB 2W96A 5IDNB 4F6WB 4BBSM 2CYZB 2CZ7B 4F6UB 4KRCB 3M03A 1H26B 4BBRM 1G3NC 4I3ZB 1UNHD 4RODA 3GTMS 4F70B 4BCMD 3QYHB 2C5VB 1GUXA 5IDPB 2V22B 1OKVB 4CFNB 3QWLA 2R7GA 2QF7A 1F5QB 2WMAB 2G77A 3QYEA 2W9ZA 3H4CA 3NDQA 4YOSA 4JX6A 2BKZB 3QYBA 4BCOB 5I5ZB 2QDYB 1PKDB 4ELJA 4FM4B 2W9FA 5BNJB 2UZDB 5HNBB 4MFEA 4BCPB 1E9HB 2PK9B 4OB2B 3VKHA 1OGUB 2C5OB 1JSTB 2EUFA 3F5XB 3WVEB 4OB0B 3QHWB 1H28B 2DXCB 3A8GB 1H24B 4EOQB 1O9KB 2KR6A 1W98B 5ACBA 2WIHB 2BS4A 4MFDA 4HL4A 2IW8B 5EJCA 4HLQA 3VKGA 4CFVB 1UNGD 2CZ6B 2W99A 2IN3A 1VOLA 4NSTB 1BU2A 1ENWA 2D0QB 4G6LB 3MI9B 2IW6B 4QSHA 3X24B 4MIMA 3BHVB 2WHBB 2I53A 4EOSB 4F7SB 1GH6B 4JX5A 5IF1B 4AKHA 4EOOB 1JSUB 2ZPBB 2DD4B 2DMEA 2PJQA 1GUXB 2WXVB 2QGSA 1OL1B 1KXUA 4YC3B 2CCHB 4FX3B 1H1PB 4CXAB 5HBEB 4BCKB 1UGRB 4EOIB 5HBJB 4TTHA 5HQ0B 4AI6A 3HO8A 3POMA 5HBHB 3WVDB 4IMYB 3DOGB 3BLQB 3KHIA 4F7LB 1E7PA 1AD6A 1V29B 2C6TB 2ZPGB 4EOLB 3B57A 2ZCFB 3K7AM 2PHGA 3RGFB 4HNUA 1FINB 2DD5B 3G33B 2ZPEB 2DXBB 2PMIB 2ZZDB 2UUEB 4OB1B 5FGKB 1OIUB 2QFZA 3HZJA 2CZ0B 5L2WB 2CZ1B 2WIPB 1TD6A 1QLBA 4ELLA 1H1RB 4BCNB 4EONB 2ZPFB 3TN8B 1FKMA 3DJBA 3MY5B 3X28B 1H25B 4BCGB 5DQVA
chains in the Genus database with same CATH topology
2D0QB 2KMGA 3A8OB 4BBRM 3TW6A 3A8LB 4QSHA 4ZGEB 2WJ9A 3X24B 4MIMA 4NC6A 3X26B 3QZ5B 4ZGDB 2AHJB 3QYHB 3HBLA 3BG5A 4JX5A 4AKHA 2ZPBB 2DPPB 2DD4B 2BS3A 3TW7A 3QWLA 1IREB 2QF7A 4HNVA 2G77A 3QYEA 3H4CA 4Z6YA 3QXEB 2BS2A 4JX6A 3VYHB 3HB9A 3QYBA 2QDYB 4ELJA 4FM4B 4AKIA 2ZPIB 4MFEA 1UGRB 3A8MB 3QYGB 3BG3A 4AI6A 3HO8A 1UGSB 3WVDB 4OB2B 3X20B 3KHIA 1E7PA 4M6VA 1V29B 3VKHA 3A8HB 3VYGB 2ZPGB 4JX4A 2ZPHB 1UGPB 4LOCA 4HNTA 2ZCFB 3QZ9B 4HNUA 2DD5B 3WVEB 4OB0B 2DXCB 2ZPEB 3A8GB 2DXBB 4AKGA 2ZZDB 4OB1B 2KR6A 1AHJB 2QFZA 3DL1A 2BS4A 3HZJA 2CZ0B 4MFDA 4OB3B 4ZGJB 2CZ1B 4HL4A 1QLBA 2QDJA 3BG9A 3HHTB 2ZPFB 1UGQB 5EJCA 4HLQA 3VKGA 3X25B 2QQ8A 4BBSM 2CZ6B 1FKMA 2CYZB 2CZ7B 3X28B
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 1UGS B;  2ZPB B;  2DPP B;  2DD4 B;  4OB2 B;  3WVD B;  3X20 B;  1IRE B;  2D0Q B;  2CZ0 B;  3A8O B;  4OB3 B;  1V29 B;  3A8L B;  4ZGJ B;  3A8H B;  3VYG B;  2ZPG B;  2CZ1 B;  2ZPH B;  3QXE B;  4ZGE B;  1UGP B;  2ZCF B;  3HHT B;  3QZ9 B;  2ZPF B;  3VYH B;  3X24 B;  2DD5 B;  3WVE B;  2QDY B;  4OB0 B;  1UGQ B;  4FM4 B;  3X26 B;  2ZPI B;  2DXC B;  3QZ5 B;  2ZPE B;  3X25 B;  3A8G B;  2DXB B;  4ZGD B;  2AHJ B;  1UGR B;  3A8M B;  3QYH B;  2CZ6 B;  3QYG B;  2CYZ B;  2CZ7 B;  2ZZD B;  4OB1 B;  3X28 B;  1AHJ B; 
#chains in the Genus database with same CATH topology
 1GY3 B;  2UZE B;  5LQF B;  3TW6 A;  3A8L B;  1C9B A;  4BCI B;  1AIS B;  2F2C A;  2JGZ B;  3QHR B;  2C5N B;  4BY7 X;  1XO2 A;  4EC9 B;  2AHJ B;  4OGR B;  3BLH B;  3BG5 A;  1P5E B;  4CFU B;  2BS3 A;  3TW7 A;  1IRE B;  3BHT B;  4HNV A;  4Z6Y A;  3QXE B;  4II5 B;  3MIA B;  3VYH B;  3HB9 A;  4BCM B;  4AKI A;  2ZPI B;  5ICP B;  1OIY B;  3O0G D;  1JOW A;  3BG3 A;  4ROE A;  1UGS B;  2G9X B;  4UN0 A;  1OI9 B;  4M6V A;  3A8H B;  1VIN A;  2W2H A;  4CFM B;  2ZPH B;  4HNT A;  3QZ9 B;  2WMB B;  2C4G B;  4BCQ B;  4AKG A;  1OL2 B;  3EID B;  4CRL B;  5CYI B;  1AHJ B;  4BCH B;  5HVY B;  2WEV B;  4CFU D;  5IHY A;  5DQW A;  2I40 B;  4ZGJ B;  1N4M A;  4ROC A;  3BG9 A;  3HHT B;  1UGQ B;  2PK2 A;  3X25 B;  2QQ8 A;  2BPM B;  4BXX X;  1UNL D;  4F6S B;  1H27 B;  4F7N B;  2C5X B;  1FVV B;  2KMG A;  3A8O B;  2IW9 B;  4ZGE B;  2WJ9 A;  4EOP B;  1QMZ B;  4NC6 A;  3X26 B;  3QZ5 B;  2LW4 A;  4ZGD B;  2UZL B;  3TNI B;  4KRD B;  3HBL A;  4YOZ A;  4BCQ D;  4F7J B;  4EOJ B;  2X1N B;  2DPP B;  2IVX A;  4YOO A;  2CCI B;  5LMK B;  2WPA B;  4EOM B;  2BS2 A;  4EOR B;  3MY1 B;  4OR5 B;  1OKW B;  3PO3 S;  2CJM B;  3EOC B;  4CFW B;  1H4L D;  3A8M B;  4Y72 B;  3QYG B;  1VYW B;  1JKW A;  1TFB A;  2B9R A;  3EJ1 B;  3TNW B;  4EOK B;  1H1Q B;  3X20 B;  4BCJ B;  3VYG B;  5EFQ B;  4JX4 A;  1UGP B;  4LOC A;  3DDQ B;  1O9K A;  3DTO A;  4CFX B;  4BCN D;  1H1S B;  4BCF B;  4EC8 B;  3LQ5 B;  3DL1 A;  3DDP B;  5CEI B;  3BLR B;  4BY1 X;  1D3U B;  4OB3 B;  3TNH B;  1URC B;  1ZP2 A;  2WFY B;  2QDJ A;  2UZB B;  3BHU B;  2W96 A;  5IDN B;  4F6W B;  4BBS M;  2CYZ B;  2CZ7 B;  4F6U B;  4KRC B;  3M03 A;  1H26 B;  4BBR M;  1G3N C;  4I3Z B;  1UNH D;  4ROD A;  3GTM S;  4F70 B;  4BCM D;  3QYH B;  2C5V B;  1GUX A;  5IDP B;  2V22 B;  1OKV B;  4CFN B;  3QWL A;  2R7G A;  2QF7 A;  1F5Q B;  2WMA B;  2G77 A;  3QYE A;  2W9Z A;  3H4C A;  3NDQ A;  4YOS A;  4JX6 A;  2BKZ B;  3QYB A;  4BCO B;  5I5Z B;  2QDY B;  1PKD B;  4ELJ A;  4FM4 B;  2W9F A;  5BNJ B;  2UZD B;  5HNB B;  4MFE A;  4BCP B;  1E9H B;  2PK9 B;  4OB2 B;  3VKH A;  1OGU B;  2C5O B;  1JST B;  2EUF A;  3F5X B;  3WVE B;  4OB0 B;  3QHW B;  1H28 B;  2DXC B;  3A8G B;  1H24 B;  4EOQ B;  1O9K B;  2KR6 A;  1W98 B;  5ACB A;  2WIH B;  2BS4 A;  4MFD A;  4HL4 A;  2IW8 B;  5EJC A;  4HLQ A;  3VKG A;  4CFV B;  1UNG D;  2CZ6 B;  2W99 A;  2IN3 A;  1VOL A;  4NST B;  1BU2 A;  1ENW A;  2D0Q B;  4G6L B;  3MI9 B;  2IW6 B;  4QSH A;  3X24 B;  4MIM A;  3BHV B;  2WHB B;  2I53 A;  4EOS B;  4F7S B;  1GH6 B;  4JX5 A;  5IF1 B;  4AKH A;  4EOO B;  1JSU B;  2ZPB B;  2DD4 B;  2DME A;  2PJQ A;  1GUX B;  2WXV B;  2QGS A;  1OL1 B;  1KXU A;  4YC3 B;  2CCH B;  4FX3 B;  1H1P B;  4CXA B;  5HBE B;  4BCK B;  1UGR B;  4EOI B;  5HBJ B;  4TTH A;  5HQ0 B;  4AI6 A;  3HO8 A;  3POM A;  5HBH B;  3WVD B;  4IMY B;  3DOG B;  3BLQ B;  3KHI A;  4F7L B;  1E7P A;  1AD6 A;  1V29 B;  2C6T B;  2ZPG B;  4EOL B;  3B57 A;  2ZCF B;  3K7A M;  2PHG A;  3RGF B;  4HNU A;  1FIN B;  2DD5 B;  3G33 B;  2ZPE B;  2DXB B;  2PMI B;  2ZZD B;  2UUE B;  4OB1 B;  5FGK B;  1OIU B;  2QFZ A;  3HZJ A;  2CZ0 B;  5L2W B;  2CZ1 B;  2WIP B;  1TD6 A;  1QLB A;  4ELL A;  1H1R B;  4BCN B;  4EON B;  2ZPF B;  3TN8 B;  1FKM A;  3DJB A;  3MY5 B;  3X28 B;  1H25 B;  4BCG B;  5DQV A; 
#chains in the Genus database with same CATH homology
 2D0Q B;  2KMG A;  3A8O B;  4BBR M;  3TW6 A;  3A8L B;  4QSH A;  4ZGE B;  2WJ9 A;  3X24 B;  4MIM A;  4NC6 A;  3X26 B;  3QZ5 B;  4ZGD B;  2AHJ B;  3QYH B;  3HBL A;  3BG5 A;  4JX5 A;  4AKH A;  2ZPB B;  2DPP B;  2DD4 B;  2BS3 A;  3TW7 A;  3QWL A;  1IRE B;  2QF7 A;  4HNV A;  2G77 A;  3QYE A;  3H4C A;  4Z6Y A;  3QXE B;  2BS2 A;  4JX6 A;  3VYH B;  3HB9 A;  3QYB A;  2QDY B;  4ELJ A;  4FM4 B;  4AKI A;  2ZPI B;  4MFE A;  1UGR B;  3A8M B;  3QYG B;  3BG3 A;  4AI6 A;  3HO8 A;  1UGS B;  3WVD B;  4OB2 B;  3X20 B;  3KHI A;  1E7P A;  4M6V A;  1V29 B;  3VKH A;  3A8H B;  3VYG B;  2ZPG B;  4JX4 A;  2ZPH B;  1UGP B;  4LOC A;  4HNT A;  2ZCF B;  3QZ9 B;  4HNU A;  2DD5 B;  3WVE B;  4OB0 B;  2DXC B;  2ZPE B;  3A8G B;  2DXB B;  4AKG A;  2ZZD B;  4OB1 B;  2KR6 A;  1AHJ B;  2QFZ A;  3DL1 A;  2BS4 A;  3HZJ A;  2CZ0 B;  4MFD A;  4OB3 B;  4ZGJ B;  2CZ1 B;  4HL4 A;  1QLB A;  2QDJ A;  3BG9 A;  3HHT B;  2ZPF B;  1UGQ B;  5EJC A;  4HLQ A;  3VKG A;  3X25 B;  2QQ8 A;  4BBS M;  2CZ6 B;  1FKM A;  2CYZ B;  2CZ7 B;  3X28 B;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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