The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
30
|
sequence length |
89
|
structure length |
89
|
Chain Sequence |
MHKDELLELHEQMVNIKDQFLGFDHVDETAFAAYEELDVEPSHVHKSKSEHKHAVFLLGNALAAAMSEDEFSSAGRISKRMEELADDAS
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Crystal structure of Vng1086c from Halobacterium salinarium (Halobacterium halobium). Northeast Structural Genomics Target HsR14
rcsb |
| molecule tags |
Structural genomics, unknown function
|
| source organism |
Halobacterium sp.
|
| molecule keywords |
Protein Vng1086c
|
| total genus |
30
|
| structure length |
89
|
| sequence length |
89
|
| chains with identical sequence |
B
|
| ec nomenclature | |
| pdb deposition date | 2006-03-21 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF01893 | UPF0058 | Uncharacterised protein family UPF0058 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Up-down Bundle | Substrate Binding Domain Of Dnak; Chain:A; Domain 2 | Uncharacterised protein family UPF0058 |
#chains in the Genus database with same CATH superfamily 2GF4 A; #chains in the Genus database with same CATH topology 4NSW A; 5TKY A; 4R5L A; 3BUB A; 2Q13 A; 4PO2 A; 2WIN M; 1I4D A; 2RT6 A; 2FIC A; 4AZG A; 2Z0O A; 2JNS A; 3I2W A; 1ZYL A; 2V0O A; 3BLB A; 3DYT A; 1WDZ A; 3DPQ A; 1W9M A; 2OBM A; 2X3X A; 3BVT A; 4AZC B; 1SU6 A; 3DX4 A; 4AZI A; 4R5K A; 4DYL A; 4JNF A; 1SUF A; 3D52 A; 3DX1 A; 4F01 A; 4WPE A; 1DKZ A; 2F1B A; 1PS3 A; 2YIB A; 3DPP A; 3KDR A; 2F18 A; 3QNJ A; 3BUI A; 3D4Z A; 4JN4 A; 2YKT A; 2C08 A; 2YL8 A; 2X3W A; 1R5E A; 2F7O A; 2F7R A; 1Y2O A; 2D4C A; 3BVU A; 2ND0 A; 2YIA A; 1TQS A; 3D2F A; 2LXY A; 1YWM A; 1QWN A; 3DDG A; 4EZY A; 3BVW A; 2O0I 1; 4F00 A; 2ELB A; 2ND1 A; 1JQK A; 2WYH A; 3ABH A; 3T49 A; 2Q12 A; 1DKY A; 4HY9 A; 3CZS A; 1O7D C; 3QA8 A; 3PLT A; 2YLL A; 4WPC A; 3T48 A; 1R34 A; 1OAO A; 3ER8 C; 1MJG A; 3EJQ A; 4JWI A; 3ER9 B; 2GAF D; 2GF4 A; 4FM3 A; 3CVR A; 3SYV A; 2YL9 A; 3OHX M; 3HAJ A; 4EZQ A; 4D8J A; 2F7Q A; 3I01 A; 3T4A G; 3B52 X; 2ALW A; 4AKV A; 1I4L A; 1U00 A; 4NQI A; 1TQW A; 2RAI A; 3T46 A; 5C5B B; 4ATM A; 1TQT A; 4H8S A; 3F7W A; 2EX3 B; 4JL9 A; 3RV0 A; 4FZP A; 2NCZ A; 4KIK A; 1O7D B; 1E2U A; 4AZ6 A; 1HTY A; 3D2E A; 3DX3 A; 2Z0V A; 3LMF A; 3EJT A; 1R33 A; 4EZV A; 4IWQ A; 3KAV A; 4JWE A; 2PY6 A; 2GA9 D; 1GNT A; 1X04 A; 2YL5 A; 4AZH A; 2JNK A; 1GNL A; 3SOG A; 4EZZ A; 3QWE A; 2EFL A; 1OA0 A; 4FZS A; 4H6I A; 4IWP A; 4EZT A; 4FZO A; 2YLA A; 3ACO A; 3EJP A; 3QE6 A; 5KBP A; 3VKH A; 3DDF A; 2Z0N A; 1E9V A; 3M3W A; 4H6H A; 3BUQ A; 3BUP A; 3O3M B; 3KAW A; 4AVM A; 4AZ7 A; 4JWC A; 4IM3 A; 2EFK A; 4IM0 A; 1QWU A; 3A98 A; 3B53 X; 3CZN A; 1I4T A; 3Q84 A; 2D1L A; 1DKX A; 1SU7 A; 4HR1 A; 1LQ7 A; 2QXL A; 4G6Q A; 1URU A; 2RAK A; 2PMR A; 2OBL A; 4DCN C; 3BUD A; 3EJS A; 3O3O B; 4JNE A; 2YL6 A; 3CKD A; 3G9G A; 4JWD A; 5C5B A; 4EZO A; 3D51 A; 3L3O M; 3BVX A; 3RPM A; 2X3V A; 2RAJ A; 2EWF A; 3HAH A; 3BVV A; 3T47 A; 4AZB A; 4EZU A; 2F1A A; 4I1Q A; 3DX0 A; 3ERC C; 1ZWW A; 4AZC A; 4E81 A; 2YI9 A; 2KHO A; 5E84 A; 3FD9 A; 3ZED A; 3O3N B; 3LVT A; 4B9Q A; 4E3C A; 2OW6 A; 2N3K A; 5FIG A; 4EZW A; 4AZ5 A; 4KIK B; 4IWO A; 3L3P A; 1E1D A; 4EZS A; 4HYB A; 2MI7 A; 4UDY X; 3CAZ A; 3RV1 A; 3D4Y A; 4EZN A; 3HAI A; 3QNI A; 4NPH A; 2WYI A; 3OK8 A; 2F7P A; 3DX2 A; 4EZR A; 1SU8 A; 1GN9 A; 2QFF A; 2QKW A; 3LLL A; 3VEB A; 1TQU A; 3OWG A; 2LM0 A; 4JLC A; 2Z8Y A; 2OO2 A; 3D50 A; 3B51 X; 3GI7 A; 3UIT A; 3I39 X; 2YI8 A; 1HWW A; 4IW0 A; 3C7N A; 3EJR A; 4BNE A; 1TQV A; 4IM2 A; 3DPO A; 2ZXQ A; 1I49 A; 1UPX A; 2X5C A; 2OZN B; 4R5I A; 3CV5 A; 5FLE X; 4R5G A; 2OW7 A; 4R5J A; 4EZP A; 3VEA A; 4UDX X; 4EZX A; 4M0M A; 2FYV A; 1X03 A; 3EJU A; 3I04 A; 2YIV X; 1QX1 A; 3Q0K A; 1OA1 A; 1HXK A; 4HR1 B; #chains in the Genus database with same CATH homology 2GF4 A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
