2JNSA

Solution structure of the bromodomain-containing protein 4 et domain
Total Genus 20

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
20
sequence length
90
structure length
90
Chain Sequence
GSSGSSGESEEEDKCKPMSYEEKRQLSLDINKLPGEKLGRVVHIIQSREPSLKNSNPDEIEIDFETLKPSTLRELERYVTSCLRKKRKPQ

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTIV1 (1-4)TI1 (9-12)TIV2 (8-11)TI2 (10-13)TIV3 (13-16)AH1 (20-31)TI6 (63-66)AH2 (35-47)AH3 (69-81)3H1 (50-52)TI5 (56-59)TI7 (64-67)TI4 (52-55)TI8 (81-84)Updating...
connected with : NaN
molecule tags Unknown function
source organism Mus musculus
publication title Solution structure of the Bromodomain-containing protein 4 ET domain
rcsb
molecule keywords Bromodomain-containing protein 4
total genus 20
structure length 90
sequence length 90
ec nomenclature
pdb deposition date 2007-02-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF17035 BET Bromodomain extra-terminal - transcription regulation
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1270.220 Mainly Alpha Up-down Bundle Substrate Binding Domain Of Dnak; Chain:A; Domain 2 Substrate Binding Domain Of Dnak; Chain:A; Domain 2 2jnsA01
2ND0A 2ND1A 2N3KA 2JNSA 2NCZA
chains in the Genus database with same CATH superfamily
4NQIA 4JWEA 3CZNA 3EJPA 1I4LA 4JNFA 3BVWA 2OBLA 1JQKA 3D4YA 2ND0A 1MJGA 1E1DA 2ELBA 4FZSA 3DDFA 4UDYX 3RV1A 2OZNB 2QKWA 1DKYA 4JN4A 2WYHA 3VEAA 2Z0NA 3BLBA 3QA8A 2F7OA 4NSWA 2EFLA 3OHXM 3DYTA 3DDGA 2YI8A 2WYIA 2Z0VA 1SU8A 4G6QA 3O3OB 3HAIA 3CAZA 2X3XA 1GNLA 2JNSA 4WPEA 4IWPA 2OW6A 3O3MB 2F7QA 1X03A 5KBPA 4IWQA 4M0MA 3EJSA 1SU6A 3EJRA 3ZEDA 3B53X 2PMRA 2YLAA 1TQVA 3C7NA 2F1AA 1SUFA 2YI9A 4AZIA 2OW7A 4F01A 1TQTA 3KAWA 4H6IA 2GA9D 3LVTA 3KAVA 3BUPA 2EWFA 2Z8YA 4D8JA 4B9QA 4EZSA 3T49A 2QFFA 4AKVA 2YIVX 1Y2OA 3EJUA 3DX1A 3O3NB 3T48A 4AZCA 3RPMA 4JWDA 2ZXQA 3DX4A 5C5BB 3LMFA 5E84A 4AZBA 4KIKB 3L3OM 3BVXA 2O0I1 2YIBA 2D4CA 4HR1B 3ER9B 3CV5A 1UPXA 2LXYA 2D1LA 4H8SA 2F1BA 4EZVA 3I2WA 1OA0A 1YWMA 3QNIA 1OA1A 3D2EA 3G9GA 2Q13A 1W9MA 3Q84A 1R33A 4EZWA 4H6HA 1LQ7A 3SOGA 2WINM 1E2UA 1O7DC 2OO2A 5FIGA 4IWOA 2MI7A 1OAOA 1WDZA 4IW0A 3FD9A 4AZHA 3EJTA 1QWUA 3DX0A 2F7RA 2RAJA 3A98A 1ZWWA 2X3VA 4JLCA 3QWEA 3D52A 3Q0KA 5FLEX 2OBMA 1PS3A 3CKDA 3B52X 3RV0A 3HAHA 1E9VA 3SYVA 3D50A 1HTYA 3ER8C 4EZQA 4F00A 4IM2A 2Z0OA 4FZPA 3BUBA 3BVTA 2ND1A 1I4DA 2YL8A 3BVVA 3D4ZA 2GF4A 3I01A 3QNJA 2LM0A 3CVRA 3M3WA 1GNTA 4IM3A 4AZGA 3F7WA 1HXKA 3L3PA 4JWCA 2ALWA 4EZUA 4R5LA 1U00A 4FM3A 4EZNA 3OK8A 1TQUA 3BUIA 1I49A 3D51A 4JL9A 4ATMA 1I4TA 3CZSA 4DYLA 4DCNC 4R5JA 2N3KA 4EZOA 3I39X 3ACOA 2FICA 3T4AG 2YL5A 4AVMA 3T47A 4BNEA 3PLTA 3GI7A 4AZ5A 2F7PA 1DKXA 4I1QA 5C5BA 1TQWA 4EZXA 2X5CA 1O7DB 2X3WA 2PY6A 4KIKA 2Q12A 2EFKA 4EZPA 3LLLA 1X04A 1QWNA 3B51X 4PO2A 4HR1A 1URUA 4EZZA 3VEBA 4R5KA 1DKZA 1SU7A 4AZCB 2NCZA 3EJQA 1R5EA 3T46A 4E3CA 1R34A 2YL6A 1HWWA 4E81A 2YIAA 2KHOA 4IM0A 2F18A 4EZTA 1TQSA 3VKHA 4R5IA 2V0OA 4JWIA 3OWGA 3I04A 2C08A 5TKYA 4HY9A 2QXLA 3DPPA 3ERCC 1QX1A 3D2FA 2RAKA 4EZYA 3UITA 2YL9A 1ZYLA 4FZOA 1GN9A 2JNKA 3BVUA 4AZ7A 4JNEA 3DX2A 2FYVA 4EZRA 3BUDA 3HAJA 3KDRA 4WPCA 4AZ6A 2YLLA 3DPQA 2GAFD 3DX3A 4NPHA 2RAIA 4UDXX 3QE6A 3BUQA 2EX3B 2YKTA 4HYBA 2RT6A 3DPOA 4R5GA 3ABHA
chains in the Genus database with same CATH topology
4JLCA 1DKXA 4JWEA 4EZXA 2X5CA 5FLEX 2PY6A 3O3NB 3T48A 2OBMA 4JWDA 3B52X 3RV0A 4KIKA 1E9VA 4EZPA 4JNFA 2OBLA 1JQKA 3B51X 4PO2A 3ER8C 3LMFA 2ND0A 4HR1A 5E84A 4EZZA 3VEBA 4R5KA 1DKZA 1SU7A 1MJGA 2NCZA 1E1DA 4EZQA 4F00A 4IM2A 4KIKB 3L3OM 4UDYX 3RV1A 2YIBA 3T46A 1DKYA 4E3CA 2ND1A 4HR1B 4E81A 4JN4A 2YIAA 3VEAA 3ER9B 2KHOA 4IM0A 1UPXA 3QA8A 4EZTA 3VKHA 3I01A 4R5IA 3OHXM 3OWGA 4JWIA 4EZVA 3I04A 2LM0A 3QNJA 5TKYA 4HY9A 2QXLA 1OA0A 2YI8A 3DPPA 3ERCC 1SU8A 3D2FA 1OA1A 1GNTA 3D2EA 3UITA 4EZYA 4IM3A 3F7WA 4G6QA 3O3OB 1W9MA 1GNLA 4JWCA 2JNSA 1ZYLA 4IWPA 4EZUA 4R5LA 4EZWA 1U00A 4FM3A 1GN9A 3O3MB 4H6HA 4JNEA 4IWQA 4EZNA 4M0MA 2WINM 1E2UA 1SU6A 4EZRA 5FIGA 4JL9A 3ZEDA 4IWOA 3B53X 1OAOA 3KDRA 4IW0A 3C7NA 3FD9A 1SUFA 2YI9A 3DPQA 4F01A 2GAFD 4R5JA 4NPHA 2N3KA 4EZOA 3I39X 3KAWA 4H6IA 4UDXX 2GA9D 3KAVA 3T4AG 2EWFA 2Z8YA 4D8JA 2EX3B 4HYBA 4B9QA 2RT6A 3DPOA 4EZSA 3T49A 2QFFA 3A98A 2YIVX 4R5GA 3T47A 3GI7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2ND0 A;  2ND1 A;  2N3K A;  2JNS A;  2NCZ A; 
#chains in the Genus database with same CATH topology
 4NQI A;  4JWE A;  3CZN A;  3EJP A;  1I4L A;  4JNF A;  3BVW A;  2OBL A;  1JQK A;  3D4Y A;  2ND0 A;  1MJG A;  1E1D A;  2ELB A;  4FZS A;  3DDF A;  4UDY X;  3RV1 A;  2OZN B;  2QKW A;  1DKY A;  4JN4 A;  2WYH A;  3VEA A;  2Z0N A;  3BLB A;  3QA8 A;  2F7O A;  4NSW A;  2EFL A;  3OHX M;  3DYT A;  3DDG A;  2YI8 A;  2WYI A;  2Z0V A;  1SU8 A;  4G6Q A;  3O3O B;  3HAI A;  3CAZ A;  2X3X A;  1GNL A;  2JNS A;  4WPE A;  4IWP A;  2OW6 A;  3O3M B;  2F7Q A;  1X03 A;  5KBP A;  4IWQ A;  4M0M A;  3EJS A;  1SU6 A;  3EJR A;  3ZED A;  3B53 X;  2PMR A;  2YLA A;  1TQV A;  3C7N A;  2F1A A;  1SUF A;  2YI9 A;  4AZI A;  2OW7 A;  4F01 A;  1TQT A;  3KAW A;  4H6I A;  2GA9 D;  3LVT A;  3KAV A;  3BUP A;  2EWF A;  2Z8Y A;  4D8J A;  4B9Q A;  4EZS A;  3T49 A;  2QFF A;  4AKV A;  2YIV X;  1Y2O A;  3EJU A;  3DX1 A;  3O3N B;  3T48 A;  4AZC A;  3RPM A;  4JWD A;  2ZXQ A;  3DX4 A;  5C5B B;  3LMF A;  5E84 A;  4AZB A;  4KIK B;  3L3O M;  3BVX A;  2O0I 1;  2YIB A;  2D4C A;  4HR1 B;  3ER9 B;  3CV5 A;  1UPX A;  2LXY A;  2D1L A;  4H8S A;  2F1B A;  4EZV A;  3I2W A;  1OA0 A;  1YWM A;  3QNI A;  1OA1 A;  3D2E A;  3G9G A;  2Q13 A;  1W9M A;  3Q84 A;  1R33 A;  4EZW A;  4H6H A;  1LQ7 A;  3SOG A;  2WIN M;  1E2U A;  1O7D C;  2OO2 A;  5FIG A;  4IWO A;  2MI7 A;  1OAO A;  1WDZ A;  4IW0 A;  3FD9 A;  4AZH A;  3EJT A;  1QWU A;  3DX0 A;  2F7R A;  2RAJ A;  3A98 A;  1ZWW A;  2X3V A;  4JLC A;  3QWE A;  3D52 A;  3Q0K A;  5FLE X;  2OBM A;  1PS3 A;  3CKD A;  3B52 X;  3RV0 A;  3HAH A;  1E9V A;  3SYV A;  3D50 A;  1HTY A;  3ER8 C;  4EZQ A;  4F00 A;  4IM2 A;  2Z0O A;  4FZP A;  3BUB A;  3BVT A;  2ND1 A;  1I4D A;  2YL8 A;  3BVV A;  3D4Z A;  2GF4 A;  3I01 A;  3QNJ A;  2LM0 A;  3CVR A;  3M3W A;  1GNT A;  4IM3 A;  4AZG A;  3F7W A;  1HXK A;  3L3P A;  4JWC A;  2ALW A;  4EZU A;  4R5L A;  1U00 A;  4FM3 A;  4EZN A;  3OK8 A;  1TQU A;  3BUI A;  1I49 A;  3D51 A;  4JL9 A;  4ATM A;  1I4T A;  3CZS A;  4DYL A;  4DCN C;  4R5J A;  2N3K A;  4EZO A;  3I39 X;  3ACO A;  2FIC A;  3T4A G;  2YL5 A;  4AVM A;  3T47 A;  4BNE A;  3PLT A;  3GI7 A;  4AZ5 A;  2F7P A;  1DKX A;  4I1Q A;  5C5B A;  1TQW A;  4EZX A;  2X5C A;  1O7D B;  2X3W A;  2PY6 A;  4KIK A;  2Q12 A;  2EFK A;  4EZP A;  3LLL A;  1X04 A;  1QWN A;  3B51 X;  4PO2 A;  4HR1 A;  1URU A;  4EZZ A;  3VEB A;  4R5K A;  1DKZ A;  1SU7 A;  4AZC B;  2NCZ A;  3EJQ A;  1R5E A;  3T46 A;  4E3C A;  1R34 A;  2YL6 A;  1HWW A;  4E81 A;  2YIA A;  2KHO A;  4IM0 A;  2F18 A;  4EZT A;  1TQS A;  3VKH A;  4R5I A;  2V0O A;  4JWI A;  3OWG A;  3I04 A;  2C08 A;  5TKY A;  4HY9 A;  2QXL A;  3DPP A;  3ERC C;  1QX1 A;  3D2F A;  2RAK A;  4EZY A;  3UIT A;  2YL9 A;  1ZYL A;  4FZO A;  1GN9 A;  2JNK A;  3BVU A;  4AZ7 A;  4JNE A;  3DX2 A;  2FYV A;  4EZR A;  3BUD A;  3HAJ A;  3KDR A;  4WPC A;  4AZ6 A;  2YLL A;  3DPQ A;  2GAF D;  3DX3 A;  4NPH A;  2RAI A;  4UDX X;  3QE6 A;  3BUQ A;  2EX3 B;  2YKT A;  4HYB A;  2RT6 A;  3DPO A;  4R5G A;  3ABH A; 
#chains in the Genus database with same CATH homology
 4JLC A;  1DKX A;  4JWE A;  4EZX A;  2X5C A;  5FLE X;  2PY6 A;  3O3N B;  3T48 A;  2OBM A;  4JWD A;  3B52 X;  3RV0 A;  4KIK A;  1E9V A;  4EZP A;  4JNF A;  2OBL A;  1JQK A;  3B51 X;  4PO2 A;  3ER8 C;  3LMF A;  2ND0 A;  4HR1 A;  5E84 A;  4EZZ A;  3VEB A;  4R5K A;  1DKZ A;  1SU7 A;  1MJG A;  2NCZ A;  1E1D A;  4EZQ A;  4F00 A;  4IM2 A;  4KIK B;  3L3O M;  4UDY X;  3RV1 A;  2YIB A;  3T46 A;  1DKY A;  4E3C A;  2ND1 A;  4HR1 B;  4E81 A;  4JN4 A;  2YIA A;  3VEA A;  3ER9 B;  2KHO A;  4IM0 A;  1UPX A;  3QA8 A;  4EZT A;  3VKH A;  3I01 A;  4R5I A;  3OHX M;  3OWG A;  4JWI A;  4EZV A;  3I04 A;  2LM0 A;  3QNJ A;  5TKY A;  4HY9 A;  2QXL A;  1OA0 A;  2YI8 A;  3DPP A;  3ERC C;  1SU8 A;  3D2F A;  1OA1 A;  1GNT A;  3D2E A;  3UIT A;  4EZY A;  4IM3 A;  3F7W A;  4G6Q A;  3O3O B;  1W9M A;  1GNL A;  4JWC A;  2JNS A;  1ZYL A;  4IWP A;  4EZU A;  4R5L A;  4EZW A;  1U00 A;  4FM3 A;  1GN9 A;  3O3M B;  4H6H A;  4JNE A;  4IWQ A;  4EZN A;  4M0M A;  2WIN M;  1E2U A;  1SU6 A;  4EZR A;  5FIG A;  4JL9 A;  3ZED A;  4IWO A;  3B53 X;  1OAO A;  3KDR A;  4IW0 A;  3C7N A;  3FD9 A;  1SUF A;  2YI9 A;  3DPQ A;  4F01 A;  2GAF D;  4R5J A;  4NPH A;  2N3K A;  4EZO A;  3I39 X;  3KAW A;  4H6I A;  4UDX X;  2GA9 D;  3KAV A;  3T4A G;  2EWF A;  2Z8Y A;  4D8J A;  2EX3 B;  4HYB A;  4B9Q A;  2RT6 A;  3DPO A;  4EZS A;  3T49 A;  2QFF A;  3A98 A;  2YIV X;  4R5G A;  3T47 A;  3GI7 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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