2KMGA

The structure of the klca and ardb proteins show a novel fold and antirestriction activity against type i dna restriction systems in vivo but not in vitro
Total Genus 31

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
31
sequence length
142
structure length
142
Chain Sequence
MNTEEQPVTASLVAEAQRLDFLPTYFGPRLMMRGEALVYAWMRRLCERYNGAYWHYYALSDGGFYMAPDLAGRLEIEVNGNGFRGELSADAAGIVATLFALGQLAAEIADTDAADALIDRYHFLRGFAAGHPEAAAIYRAID
2040608010012014014012010080604020
051015202530Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
TIV1 (2-5)EMPTYS1 (10-12)S2 (55-59)AH2 (29-45)TIV2 (46-49)TIV3 (78-81)S4 (74-78)O1 (53-55)TI2 (59-62)TIV4 (79-82)AH5 (133-141)AH3 (89-108)TIV5 (108-111)AH4 (112-130)AH1 (17-26)TI1 (14-17)S3 (64-67)S5 (83-87)Updating...
connected with : NaN
molecule tags Gene regulation
source organism Bordetella pertussis
publication title The structure of the KlcA and ArdB proteins reveals a novel fold and antirestriction activity against Type I DNA restriction systems in vivo but not in vitro
pubmed doi rcsb
molecule keywords KlcA
total genus 31
structure length 142
sequence length 142
ec nomenclature
pdb deposition date 2009-07-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03230 Antirestrict Antirestriction protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.472.120 Mainly Alpha Orthogonal Bundle Cyclin A; domain 1 Cyclin A; domain 1 2kmgA00
2KMGA 2WJ9A
chains in the Genus database with same CATH superfamily
4BCFB 3MIAB 2ZPEB 1TD6A 3DL1A 3TNWB 5IF1B 4AI6A 1FVVB 3KHIA 3QYGB 1H4LD 3EIDB 3GTMS 4EOKB 1D3UB 4BY1X 4CFMB 2DPPB 1IREB 2C5XB 3QZ5B 5ICPB 2PMIB 4F6WB 1OIYB 4F7NB 2AHJB 1UGQB 1XO2A 2W9FA 4OB3B 3VKHA 1H28B 2I53A 4MFEA 1VINA 4CFUD 1KXUA 1UGRB 2BS4A 2W96A 4HLQA 3TW7A 4ELJA 1AD6A 4CRLB 3BG9A 1F5QB 3G33B 4EONB 2CJMB 1PKDB 2WHBB 1H25B 1AISB 4AKIA 1OL1B 1JKWA 4ZGDB 2UZBB 1JSTB 1QMZB 4F70B 4BCKB 1GY3B 3VYHB 2DMEA 3DTOA 2WFYB 3QYBA 5HBHB 4EOQB 1ENWA 4EOJB 2G77A 4YOOA 1H1RB 4Z6YA 2I40B 3POMA 3QXEB 3QZ9B 2WJ9A 4CFUB 2ZCFB 2KMGA 4I3ZB 2BPMB 2DXBB 4EORB 4AKGA 3VKGA 1C9BA 3HHTB 2CYZB 5HQ0B 2WXVB 5EJCA 5BNJB 1UNHD 2EUFA 4BCMD 4CXAB 4AKHA 4ZGJB 3BLHB 4BCPB 2ZZDB 3NDQA 4ROCA 1UNGD 2QDYB 2BKZB 3A8LB 3X28B 2CCHB 1VYWB 2IVXA 4OB2B 4CFNB 1N4MA 4CFXB 4ROEA 4EOLB 1E7PA 4HL4A 3BHVB 3H4CA 2UZDB 1FKMA 4BCND 5IDPB 4YOZA 4JX5A 1H24B 1H1PB 4G6LB 1OL2B 2ZPGB 1H27B 4BCMB 2W9ZA 1OGUB 2W99A 2PHGA 3B57A 4BY7X 1P5EB 3EJ1B 1OKWB 2LW4A 2IN3A 3HB9A 3WVDB 3TNHB 4F7SB 1E9HB 3X24B 1UGPB 2WPAB 4FX3B 4M6VA 3M03A 2QGSA 1BU2A 5CYIB 2CZ7B 3A8HB 4KRDB 4LOCA 2ZPHB 4MFDA 3HO8A 3RGFB 4EC8B 1O9KA 2B9RA 2JGZB 3MY5B 4BCNB 4OB1B 4MIMA 4OGRB 4HNTA 2QQ8A 1GUXA 2QDJA 5L2WB 4EC9B 2ZPIB 4NC6A 1ZP2A 2WMAB 1QLBA 5IDNB 1H26B 1URCB 4BCHB 2ZPBB 2BS3A 5LMKB 4BCQD 2C5VB 3PO3S 2F2CA 3BG3A 2QF7A 3VYGB 2X1NB 5DQVA 3DJBA 1AHJB 4HNVA 3EOCB 1VOLA 5HNBB 3A8GB 3QYHB 2IW9B 4F6SB 3TNIB 4IMYB 4RODA 2CZ0B 2CCIB 3X25B 4EOSB 4BBRM 2W2HA 3BLRB 2DD4B 5LQFB 3X20B 4EOPB 3HZJA 2IW8B 4CFWB 1OKVB 2DXCB 2C5NB 4BXXX 2UZEB 1TFBA 3F5XB 3BG5A 4UN0A 4BCQB 3DOGB 1GH6B 4JX4A 3BHTB 3QYEA 1O9KB 1H1QB 1UGSB 2QFZA 3DDPB 1OIUB 3HBLA 3O0GD 1GUXB 2CZ1B 3A8OB 4KRCB 4BCOB 3QHRB 5EFQB 4ZGEB 4F7JB 2WMBB 3QHWB 2BS2A 2G9XB 3WVEB 3MI9B 2CZ6B 2KR6A 1G3NC 3X26B 1UNLD 1FINB 2D0QB 3MY1B 5CEIB 2UUEB 2DD5B 4FM4B 2ZPFB 4QSHA 4EOOB 3A8MB 4BCIB 4ELLA 2UZLB 5I5ZB 5FGKB 4JX6A 5IHYA 1OI9B 2V22B 2PK9B 4F7LB 4OB0B 2IW6B 4OR5B 1W98B 4CFVB 4II5B 4HNUA 4YC3B 5ACBA 3LQ5B 3K7AM 5HBEB 4EOIB 4BCJB 3TN8B 1JOWA 4F6UB 1JSUB 3BHUB 3DDQB 2C5OB 2PK2A 4BBSM 2PJQA 1V29B 2WIPB 2C4GB 4EOMB 4NSTB 5HBJB 4YOSA 2WEVB 4BCGB 5HVYB 3QWLA 1H1SB 2WIHB 5DQWA 2R7GA 3TW6A 4Y72B 4TTHA 3BLQB 2C6TB
chains in the Genus database with same CATH topology
4ZGEB 2ZPEB 3DL1A 4AKGA 3VKGA 2BS2A 3HHTB 3WVEB 4AI6A 2CZ6B 2KR6A 3KHIA 3QYGB 2CYZB 4OB1B 3X26B 4MIMA 2D0QB 4HNTA 2QQ8A 5EJCA 2QDJA 2ZPIB 2DD5B 4NC6A 4FM4B 2ZPFB 4QSHA 2DPPB 3A8MB 4AKHA 4ZGJB 1IREB 1QLBA 2ZZDB 3QZ5B 2QDYB 4JX6A 2ZPBB 2AHJB 1UGQB 3A8LB 2BS3A 3X28B 4OB3B 4OB0B 3VKHA 3BG3A 4OB2B 2QF7A 4MFEA 3VYGB 1UGRB 1AHJB 4HNVA 2BS4A 4HNUA 4HLQA 3TW7A 4ELJA 3A8GB 3BG9A 3QYHB 1E7PA 4HL4A 3H4CA 1FKMA 4JX5A 2CZ0B 3X25B 4BBRM 4BBSM 4AKIA 2DD4B 1V29B 2CZ1B 4ZGDB 2ZPGB 3X20B 3HZJA 3VYHB 2DXCB 3QYBA 3HB9A 3WVDB 3X24B 2G77A 1UGPB 3QWLA 3BG5A 4M6VA 4Z6YA 4JX4A 3QXEB 3QZ9B 3QYEA 2WJ9A 3TW6A 2CZ7B 3A8HB 2ZCFB 4LOCA 2ZPHB 4MFDA 1UGSB 3HO8A 2KMGA 2QFZA 3HBLA 2DXBB 3A8OB
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 2KMG A;  2WJ9 A; 
#chains in the Genus database with same CATH topology
 4BCF B;  3MIA B;  2ZPE B;  1TD6 A;  3DL1 A;  3TNW B;  5IF1 B;  4AI6 A;  1FVV B;  3KHI A;  3QYG B;  1H4L D;  3EID B;  3GTM S;  4EOK B;  1D3U B;  4BY1 X;  4CFM B;  2DPP B;  1IRE B;  2C5X B;  3QZ5 B;  5ICP B;  2PMI B;  4F6W B;  1OIY B;  4F7N B;  2AHJ B;  1UGQ B;  1XO2 A;  2W9F A;  4OB3 B;  3VKH A;  1H28 B;  2I53 A;  4MFE A;  1VIN A;  4CFU D;  1KXU A;  1UGR B;  2BS4 A;  2W96 A;  4HLQ A;  3TW7 A;  4ELJ A;  1AD6 A;  4CRL B;  3BG9 A;  1F5Q B;  3G33 B;  4EON B;  2CJM B;  1PKD B;  2WHB B;  1H25 B;  1AIS B;  4AKI A;  1OL1 B;  1JKW A;  4ZGD B;  2UZB B;  1JST B;  1QMZ B;  4F70 B;  4BCK B;  1GY3 B;  3VYH B;  2DME A;  3DTO A;  2WFY B;  3QYB A;  5HBH B;  4EOQ B;  1ENW A;  4EOJ B;  2G77 A;  4YOO A;  1H1R B;  4Z6Y A;  2I40 B;  3POM A;  3QXE B;  3QZ9 B;  2WJ9 A;  4CFU B;  2ZCF B;  2KMG A;  4I3Z B;  2BPM B;  2DXB B;  4EOR B;  4AKG A;  3VKG A;  1C9B A;  3HHT B;  2CYZ B;  5HQ0 B;  2WXV B;  5EJC A;  5BNJ B;  1UNH D;  2EUF A;  4BCM D;  4CXA B;  4AKH A;  4ZGJ B;  3BLH B;  4BCP B;  2ZZD B;  3NDQ A;  4ROC A;  1UNG D;  2QDY B;  2BKZ B;  3A8L B;  3X28 B;  2CCH B;  1VYW B;  2IVX A;  4OB2 B;  4CFN B;  1N4M A;  4CFX B;  4ROE A;  4EOL B;  1E7P A;  4HL4 A;  3BHV B;  3H4C A;  2UZD B;  1FKM A;  4BCN D;  5IDP B;  4YOZ A;  4JX5 A;  1H24 B;  1H1P B;  4G6L B;  1OL2 B;  2ZPG B;  1H27 B;  4BCM B;  2W9Z A;  1OGU B;  2W99 A;  2PHG A;  3B57 A;  4BY7 X;  1P5E B;  3EJ1 B;  1OKW B;  2LW4 A;  2IN3 A;  3HB9 A;  3WVD B;  3TNH B;  4F7S B;  1E9H B;  3X24 B;  1UGP B;  2WPA B;  4FX3 B;  4M6V A;  3M03 A;  2QGS A;  1BU2 A;  5CYI B;  2CZ7 B;  3A8H B;  4KRD B;  4LOC A;  2ZPH B;  4MFD A;  3HO8 A;  3RGF B;  4EC8 B;  1O9K A;  2B9R A;  2JGZ B;  3MY5 B;  4BCN B;  4OB1 B;  4MIM A;  4OGR B;  4HNT A;  2QQ8 A;  1GUX A;  2QDJ A;  5L2W B;  4EC9 B;  2ZPI B;  4NC6 A;  1ZP2 A;  2WMA B;  1QLB A;  5IDN B;  1H26 B;  1URC B;  4BCH B;  2ZPB B;  2BS3 A;  5LMK B;  4BCQ D;  2C5V B;  3PO3 S;  2F2C A;  3BG3 A;  2QF7 A;  3VYG B;  2X1N B;  5DQV A;  3DJB A;  1AHJ B;  4HNV A;  3EOC B;  1VOL A;  5HNB B;  3A8G B;  3QYH B;  2IW9 B;  4F6S B;  3TNI B;  4IMY B;  4ROD A;  2CZ0 B;  2CCI B;  3X25 B;  4EOS B;  4BBR M;  2W2H A;  3BLR B;  2DD4 B;  5LQF B;  3X20 B;  4EOP B;  3HZJ A;  2IW8 B;  4CFW B;  1OKV B;  2DXC B;  2C5N B;  4BXX X;  2UZE B;  1TFB A;  3F5X B;  3BG5 A;  4UN0 A;  4BCQ B;  3DOG B;  1GH6 B;  4JX4 A;  3BHT B;  3QYE A;  1O9K B;  1H1Q B;  1UGS B;  2QFZ A;  3DDP B;  1OIU B;  3HBL A;  3O0G D;  1GUX B;  2CZ1 B;  3A8O B;  4KRC B;  4BCO B;  3QHR B;  5EFQ B;  4ZGE B;  4F7J B;  2WMB B;  3QHW B;  2BS2 A;  2G9X B;  3WVE B;  3MI9 B;  2CZ6 B;  2KR6 A;  1G3N C;  3X26 B;  1UNL D;  1FIN B;  2D0Q B;  3MY1 B;  5CEI B;  2UUE B;  2DD5 B;  4FM4 B;  2ZPF B;  4QSH A;  4EOO B;  3A8M B;  4BCI B;  4ELL A;  2UZL B;  5I5Z B;  5FGK B;  4JX6 A;  5IHY A;  1OI9 B;  2V22 B;  2PK9 B;  4F7L B;  4OB0 B;  2IW6 B;  4OR5 B;  1W98 B;  4CFV B;  4II5 B;  4HNU A;  4YC3 B;  5ACB A;  3LQ5 B;  3K7A M;  5HBE B;  4EOI B;  4BCJ B;  3TN8 B;  1JOW A;  4F6U B;  1JSU B;  3BHU B;  3DDQ B;  2C5O B;  2PK2 A;  4BBS M;  2PJQ A;  1V29 B;  2WIP B;  2C4G B;  4EOM B;  4NST B;  5HBJ B;  4YOS A;  2WEV B;  4BCG B;  5HVY B;  3QWL A;  1H1S B;  2WIH B;  5DQW A;  2R7G A;  3TW6 A;  4Y72 B;  4TTH A;  3BLQ B;  2C6T B; 
#chains in the Genus database with same CATH homology
 4ZGE B;  2ZPE B;  3DL1 A;  4AKG A;  3VKG A;  2BS2 A;  3HHT B;  3WVE B;  4AI6 A;  2CZ6 B;  2KR6 A;  3KHI A;  3QYG B;  2CYZ B;  4OB1 B;  3X26 B;  4MIM A;  2D0Q B;  4HNT A;  2QQ8 A;  5EJC A;  2QDJ A;  2ZPI B;  2DD5 B;  4NC6 A;  4FM4 B;  2ZPF B;  4QSH A;  2DPP B;  3A8M B;  4AKH A;  4ZGJ B;  1IRE B;  1QLB A;  2ZZD B;  3QZ5 B;  2QDY B;  4JX6 A;  2ZPB B;  2AHJ B;  1UGQ B;  3A8L B;  2BS3 A;  3X28 B;  4OB3 B;  4OB0 B;  3VKH A;  3BG3 A;  4OB2 B;  2QF7 A;  4MFE A;  3VYG B;  1UGR B;  1AHJ B;  4HNV A;  2BS4 A;  4HNU A;  4HLQ A;  3TW7 A;  4ELJ A;  3A8G B;  3BG9 A;  3QYH B;  1E7P A;  4HL4 A;  3H4C A;  1FKM A;  4JX5 A;  2CZ0 B;  3X25 B;  4BBR M;  4BBS M;  4AKI A;  2DD4 B;  1V29 B;  2CZ1 B;  4ZGD B;  2ZPG B;  3X20 B;  3HZJ A;  3VYH B;  2DXC B;  3QYB A;  3HB9 A;  3WVD B;  3X24 B;  2G77 A;  1UGP B;  3QWL A;  3BG5 A;  4M6V A;  4Z6Y A;  4JX4 A;  3QXE B;  3QZ9 B;  3QYE A;  2WJ9 A;  3TW6 A;  2CZ7 B;  3A8H B;  2ZCF B;  4LOC A;  2ZPH B;  4MFD A;  1UGS B;  3HO8 A;  2KMG A;  2QFZ A;  3HBL A;  2DXB B;  3A8O B;
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...
How to cite
Application loaded.