The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
22
|
sequence length |
67
|
structure length |
67
|
Chain Sequence |
GSRVKALEEKVKALEEKVKALGGGGRIEELKKKYEELKKKIEELGGGGEVKKVEEEVKKLEEEIKKL
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Photochemical tyrosine oxidation in the structurally well-defined alpha 3Y protein: proton-coupled electron transfer and a long-lived tyrosine radical.
pubmed doi rcsb |
| molecule tags |
De novo protein
|
| source organism |
Synthetic construct
|
| molecule keywords |
de novo protein a3Y
|
| total genus |
22
|
| structure length |
67
|
| sequence length |
67
|
| ec nomenclature | |
| pdb deposition date | 2013-12-10 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Up-down Bundle | Substrate Binding Domain Of Dnak; Chain:A; Domain 2 | Designed single chain three-helix bundle |
#chains in the Genus database with same CATH superfamily 2ZXQ A; 2LXY A; 1LQ7 A; 2MI7 A; #chains in the Genus database with same CATH topology 4EZT A; 3DPP A; 3T4A G; 4AZC B; 4JL9 A; 3FD9 A; 4AVM A; 1OA0 A; 1W9M A; 2RAK A; 4H6H A; 3BVT A; 3HAJ A; 5FLE X; 3BUI A; 3I39 X; 4EZW A; 4ATM A; 1TQW A; 3GI7 A; 2OW6 A; 2F7R A; 2YL8 A; 3D50 A; 2ND0 A; 4EZQ A; 4HYB A; 5C5B B; 1QWU A; 3RV1 A; 3DX0 A; 3QWE A; 3QNI A; 2ZXQ A; 3D2E A; 3QE6 A; 3PLT A; 3BUQ A; 3ABH A; 4AZ7 A; 3EJS A; 3CV5 A; 2YIA A; 3ER9 B; 1JQK A; 3M3W A; 4DYL A; 1HXK A; 1R33 A; 1SUF A; 4UDX X; 1DKY A; 4M0M A; 3DX2 A; 3EJU A; 4JWE A; 2YLA A; 2PY6 A; 1GNL A; 1E9V A; 3D51 A; 4EZX A; 1TQU A; 4JNE A; 1R34 A; 3BVX A; 2YL6 A; 3DX4 A; 3Q0K A; 4JWC A; 3CZS A; 4D8J A; 2D1L A; 2Q12 A; 1DKZ A; 3OWG A; 1TQS A; 2F1B A; 3CAZ A; 1I4L A; 1I49 A; 3DDG A; 1ZWW A; 3EJT A; 3B53 X; 3G9G A; 3D4Y A; 2F1A A; 4IM3 A; 3D52 A; 4F01 A; 1OA1 A; 3KAV A; 1Y2O A; 2YL9 A; 4EZO A; 3I01 A; 4AZG A; 3B52 X; 1E2U A; 1GNT A; 2X3W A; 3CKD A; 3BUD A; 3ZED A; 4EZP A; 2OBM A; 2EFK A; 1U00 A; 2YIB A; 2N3K A; 3B51 X; 1UPX A; 2LXY A; 1SU7 A; 3DPO A; 2KHO A; 4IW0 A; 1ZYL A; 3VEB A; 2OBL A; 2X3V A; 4BNE A; 2WIN M; 3VEA A; 2X3X A; 4R5L A; 4R5K A; 3OHX M; 2Z8Y A; 2WYI A; 4E3C A; 3BLB A; 1QX1 A; 4UDY X; 2QFF A; 2JNS A; 3OK8 A; 4EZU A; 3T47 A; 3ERC C; 3SYV A; 1QWN A; 3Q84 A; 1R5E A; 1WDZ A; 4FZP A; 1HTY A; 3HAI A; 4EZY A; 4JNF A; 3BVU A; 2Z0O A; 5FIG A; 3HAH A; 2F7O A; 3LVT A; 4JWI A; 4R5I A; 2O0I 1; 1GN9 A; 4IWQ A; 3EJP A; 4NPH A; 4R5J A; 3RPM A; 4EZV A; 3D2F A; 3O3O B; 2LM0 A; 2NCZ A; 2ALW A; 2F18 A; 3I04 A; 2EFL A; 3LLL A; 4AZB A; 3CVR A; 4FZS A; 4G6Q A; 4WPE A; 3BVW A; 1PS3 A; 4B9Q A; 1O7D B; 3L3P A; 2RAI A; 4HR1 A; 3CZN A; 4H6I A; 4EZS A; 2OW7 A; 1YWM A; 3LMF A; 1X03 A; 5TKY A; 2FIC A; 1URU A; 3ACO A; 3C7N A; 1I4T A; 3T48 A; 4IWO A; 3EJQ A; 2GF4 A; 4HY9 A; 1HWW A; 2YIV X; 2Z0N A; 4AZI A; 4IWP A; 4AZH A; 4EZZ A; 4FM3 A; 1MJG A; 4NSW A; 4JWD A; 2YI8 A; 2JNK A; 4EZR A; 3DDF A; 4PO2 A; 2QXL A; 2MI7 A; 4AZ5 A; 3VKH A; 2C08 A; 1OAO A; 2GAF D; 2YI9 A; 1E1D A; 4JLC A; 1LQ7 A; 3T49 A; 3O3M B; 2YL5 A; 4R5G A; 4KIK B; 4FZO A; 4EZN A; 3F7W A; 2Q13 A; 4JN4 A; 3KDR A; 4WPC A; 3ER8 C; 4H8S A; 4HR1 B; 2OZN B; 3EJR A; 1O7D C; 4AZC A; 4AKV A; 3I2W A; 2EX3 B; 5E84 A; 3DX1 A; 1SU8 A; 2X5C A; 2F7P A; 1TQV A; 1DKX A; 3T46 A; 2GA9 D; 2EWF A; 2V0O A; 2FYV A; 4E81 A; 3SOG A; 1SU6 A; 4DCN C; 2PMR A; 1I4D A; 3DPQ A; 4NQI A; 3QNJ A; 3A98 A; 4KIK A; 4I1Q A; 2D4C A; 2ND1 A; 2QKW A; 3BUP A; 5C5B A; 2RAJ A; 2OO2 A; 2YKT A; 3O3N B; 3DYT A; 1TQT A; 3BUB A; 3QA8 A; 3KAW A; 2YLL A; 1X04 A; 2F7Q A; 3RV0 A; 2RT6 A; 4AZ6 A; 4F00 A; 2WYH A; 3UIT A; 4IM0 A; 5KBP A; 2Z0V A; 3DX3 A; 3D4Z A; 3L3O M; 3BVV A; 2ELB A; 4IM2 A; #chains in the Genus database with same CATH homology 2ZXQ A; 2LXY A; 1LQ7 A; 2MI7 A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
