2N3KA

Human brd4 et domain in complex with mlv integrase c-term
Total Genus 19

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
19
sequence length
79
structure length
79
Chain Sequence
ESEEEDKCKPMSYEEKRQLSLDINKLPGEKLGRVVHIIQSREPSLKNSNPDEIEIDFETLKPSTLRELERYVTSCLRKK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Protein binding
source organism Homo sapiens
publication title Structure of the Brd4 ET domain bound to a C-terminal motif from gamma-retroviral integrases reveals a conserved mechanism of interaction.
pubmed doi rcsb
molecule keywords Bromodomain-containing protein 4
total genus 19
structure length 79
sequence length 79
ec nomenclature
pdb deposition date 2015-06-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF17035 BET Bromodomain extra-terminal - transcription regulation
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1270.220 Mainly Alpha Up-down Bundle Substrate Binding Domain Of Dnak; Chain:A; Domain 2 Substrate Binding Domain Of Dnak; Chain:A; Domain 2 2n3kA01
2JNSA 2N3KA 2ND1A 2NCZA 2ND0A
chains in the Genus database with same CATH superfamily
1E2UA 4AZIA 2RAKA 4AZ6A 1JQKA 3OK8A 2F7OA 4HY9A 4EZNA 3G9GA 2WYHA 2OW6A 3LLLA 4BNEA 2YL6A 4D8JA 1ZWWA 4EZTA 2N3KA 1TQWA 3SYVA 4EZXA 2OW7A 3I39X 3DPOA 3QNJA 3KAWA 3D4ZA 2D1LA 2YLLA 4UDXX 3QE6A 1O7DC 3DX1A 1GNLA 1MJGA 5E84A 1QWUA 1R33A 3GI7A 4IM2A 3VKHA 3BUDA 4WPEA 1X04A 4E81A 1I4LA 3T47A 4M0MA 4H6IA 2OZNB 4EZUA 2PMRA 4KIKB 4EZZA 3Q84A 2FICA 2F1BA 1OA0A 3VEBA 4IM3A 3DX4A 1OAOA 3BVVA 3BVWA 1SU8A 2WYIA 4IWPA 4EZVA 3I2WA 4AZ7A 4FZOA 2X3VA 3SOGA 4EZRA 3DX3A 1O7DB 2F7PA 4NSWA 1WDZA 1QX1A 4R5GA 1URUA 2EFLA 3C7NA 1HXKA 3D51A 3BVXA 4F00A 4HR1A 1HTYA 4JNFA 4AZ5A 3O3NB 3D2EA 3EJRA 2ZXQA 3ER8C 3ACOA 5KBPA 2F18A 2JNSA 2YI8A 1R34A 3LMFA 3HAIA 4JLCA 1U00A 1I4DA 4WPCA 4R5LA 3UITA 2EX3B 1HWWA 4HR1B 5FIGA 3T49A 2PY6A 4JWDA 4ATMA 2YIVX 1I4TA 1DKYA 2YI9A 2X3WA 3RV1A 3B52X 3T46A 3D50A 3M3WA 4IWQA 1LQ7A 3OHXM 3B51X 2OBLA 4H6HA 4H8SA 3BVUA 3ERCC 4IW0A 2WINM 2ND1A 3KAVA 2F7RA 1GN9A 3QNIA 3D52A 1OA1A 4G6QA 5C5BA 2EWFA 3I01A 1R5EA 2GA9D 2ND0A 1DKZA 1I49A 4EZOA 2RAJA 3DPPA 4R5IA 2YL9A 2F1AA 3HAJA 2YL8A 4AVMA 4JNEA 4FZSA 4AZBA 3FD9A 3O3MB 3QA8A 3EJSA 1SUFA 1TQUA 2X3XA 3OWGA 3T48A 3KDRA 3LVTA 4HYBA 1UPXA 1PS3A 2YL5A 2Q12A 3VEAA 4JWEA 2ALWA 3DX2A 2EFKA 2RT6A 4EZYA 2Z0NA 1TQVA 2YLAA 4I1QA 2JNKA 2Q13A 3B53X 2Z0VA 4R5KA 2LM0A 3O3OB 2C08A 3DX0A 1SU7A 1X03A 3BLBA 1ZYLA 3D4YA 4AZCA 3T4AG 4JWIA 1TQSA 3BVTA 2QFFA 4JWCA 4F01A 2RAIA 4PO2A 4UDYX 2GAFD 3I04A 2O0I1 3DDGA 2Z0OA 4NPHA 2OBMA 4AZCB 2Z8YA 3CZSA 4R5JA 2OO2A 3DPQA 3EJPA 4E3CA 3BUQA 1E1DA 4FM3A 3EJTA 4EZPA 4KIKA 2YKTA 3RV0A 4AKVA 3ER9B 3CZNA 2GF4A 2NCZA 2ELBA 4AZHA 2QKWA 4EZWA 4EZSA 1DKXA 3L3PA 1W9MA 4EZQA 3BUBA 4B9QA 4IM0A 2MI7A 2QXLA 2YIAA 3DYTA 2D4CA 1GNTA 2YIBA 4FZPA 3CV5A 4IWOA 5C5BB 3CKDA 3F7WA 5TKYA 1SU6A 3BUPA 2F7QA 2FYVA 3BUIA 4DCNC 4JL9A 3HAHA 1QWNA 2KHOA 4JN4A 2X5CA 1E9VA 1YWMA 4AZGA 3EJUA 3CVRA 4DYLA 3DDFA 3PLTA 2V0OA 3A98A 3RPMA 2LXYA 1Y2OA 3L3OM 3ABHA 3Q0KA 3ZEDA 4NQIA 5FLEX 3D2FA 3QWEA 3EJQA 3CAZA 1TQTA
chains in the Genus database with same CATH topology
1E2UA 4NPHA 3I01A 2GA9D 2OBMA 2ND0A 1DKZA 2Z8YA 4R5JA 1JQKA 4EZOA 4HY9A 3DPQA 4E3CA 4EZNA 4R5GA 1E1DA 4FM3A 3DPPA 4R5IA 4EZPA 4KIKA 3C7NA 4D8JA 3RV0A 3ER9B 4EZTA 2N3KA 2NCZA 4JNEA 4F00A 4HR1A 4EZWA 4JNFA 3FD9A 4EZSA 1DKXA 3O3MB 4EZXA 3O3NB 3D2EA 3QA8A 3I39X 3ER8C 1W9MA 1SUFA 4EZQA 3DPOA 3QNJA 2JNSA 2YI8A 3KAWA 3LMFA 4B9QA 3OWGA 4JLCA 4IM0A 3T48A 3KDRA 2QXLA 2YIAA 4HYBA 1U00A 4UDXX 1UPXA 4R5LA 1GNTA 2YIBA 1GNLA 3UITA 2EX3B 1MJGA 5E84A 4IWOA 4HR1B 3F7WA 5TKYA 5FIGA 3GI7A 3VEAA 4IM2A 4JWEA 3T49A 3VKHA 1SU6A 2PY6A 4JWDA 4E81A 4JL9A 2YIVX 2RT6A 4EZYA 1DKYA 2YI9A 3T47A 3B53X 2KHOA 4H6IA 4M0MA 4EZUA 4JN4A 4KIKB 3RV1A 4EZZA 2X5CA 3B52X 1E9VA 2LM0A 3O3OB 4R5KA 3T46A 1OA0A 3VEBA 4IM3A 1SU7A 1OAOA 1ZYLA 4IWQA 3OHXM 3B51X 2OBLA 1SU8A 4H6HA 3T4AG 4JWIA 3ERCC 4IW0A 2WINM 3A98A 2ND1A 2QFFA 4IWPA 4JWCA 4F01A 3KAVA 4PO2A 4UDYX 4EZVA 3L3OM 2GAFD 3ZEDA 1GN9A 5FLEX 3I04A 3D2FA 4EZRA 1OA1A 4G6QA 2EWFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2JNS A;  2N3K A;  2ND1 A;  2NCZ A;  2ND0 A; 
#chains in the Genus database with same CATH topology
 1E2U A;  4AZI A;  2RAK A;  4AZ6 A;  1JQK A;  3OK8 A;  2F7O A;  4HY9 A;  4EZN A;  3G9G A;  2WYH A;  2OW6 A;  3LLL A;  4BNE A;  2YL6 A;  4D8J A;  1ZWW A;  4EZT A;  2N3K A;  1TQW A;  3SYV A;  4EZX A;  2OW7 A;  3I39 X;  3DPO A;  3QNJ A;  3KAW A;  3D4Z A;  2D1L A;  2YLL A;  4UDX X;  3QE6 A;  1O7D C;  3DX1 A;  1GNL A;  1MJG A;  5E84 A;  1QWU A;  1R33 A;  3GI7 A;  4IM2 A;  3VKH A;  3BUD A;  4WPE A;  1X04 A;  4E81 A;  1I4L A;  3T47 A;  4M0M A;  4H6I A;  2OZN B;  4EZU A;  2PMR A;  4KIK B;  4EZZ A;  3Q84 A;  2FIC A;  2F1B A;  1OA0 A;  3VEB A;  4IM3 A;  3DX4 A;  1OAO A;  3BVV A;  3BVW A;  1SU8 A;  2WYI A;  4IWP A;  4EZV A;  3I2W A;  4AZ7 A;  4FZO A;  2X3V A;  3SOG A;  4EZR A;  3DX3 A;  1O7D B;  2F7P A;  4NSW A;  1WDZ A;  1QX1 A;  4R5G A;  1URU A;  2EFL A;  3C7N A;  1HXK A;  3D51 A;  3BVX A;  4F00 A;  4HR1 A;  1HTY A;  4JNF A;  4AZ5 A;  3O3N B;  3D2E A;  3EJR A;  2ZXQ A;  3ER8 C;  3ACO A;  5KBP A;  2F18 A;  2JNS A;  2YI8 A;  1R34 A;  3LMF A;  3HAI A;  4JLC A;  1U00 A;  1I4D A;  4WPC A;  4R5L A;  3UIT A;  2EX3 B;  1HWW A;  4HR1 B;  5FIG A;  3T49 A;  2PY6 A;  4JWD A;  4ATM A;  2YIV X;  1I4T A;  1DKY A;  2YI9 A;  2X3W A;  3RV1 A;  3B52 X;  3T46 A;  3D50 A;  3M3W A;  4IWQ A;  1LQ7 A;  3OHX M;  3B51 X;  2OBL A;  4H6H A;  4H8S A;  3BVU A;  3ERC C;  4IW0 A;  2WIN M;  2ND1 A;  3KAV A;  2F7R A;  1GN9 A;  3QNI A;  3D52 A;  1OA1 A;  4G6Q A;  5C5B A;  2EWF A;  3I01 A;  1R5E A;  2GA9 D;  2ND0 A;  1DKZ A;  1I49 A;  4EZO A;  2RAJ A;  3DPP A;  4R5I A;  2YL9 A;  2F1A A;  3HAJ A;  2YL8 A;  4AVM A;  4JNE A;  4FZS A;  4AZB A;  3FD9 A;  3O3M B;  3QA8 A;  3EJS A;  1SUF A;  1TQU A;  2X3X A;  3OWG A;  3T48 A;  3KDR A;  3LVT A;  4HYB A;  1UPX A;  1PS3 A;  2YL5 A;  2Q12 A;  3VEA A;  4JWE A;  2ALW A;  3DX2 A;  2EFK A;  2RT6 A;  4EZY A;  2Z0N A;  1TQV A;  2YLA A;  4I1Q A;  2JNK A;  2Q13 A;  3B53 X;  2Z0V A;  4R5K A;  2LM0 A;  3O3O B;  2C08 A;  3DX0 A;  1SU7 A;  1X03 A;  3BLB A;  1ZYL A;  3D4Y A;  4AZC A;  3T4A G;  4JWI A;  1TQS A;  3BVT A;  2QFF A;  4JWC A;  4F01 A;  2RAI A;  4PO2 A;  4UDY X;  2GAF D;  3I04 A;  2O0I 1;  3DDG A;  2Z0O A;  4NPH A;  2OBM A;  4AZC B;  2Z8Y A;  3CZS A;  4R5J A;  2OO2 A;  3DPQ A;  3EJP A;  4E3C A;  3BUQ A;  1E1D A;  4FM3 A;  3EJT A;  4EZP A;  4KIK A;  2YKT A;  3RV0 A;  4AKV A;  3ER9 B;  3CZN A;  2GF4 A;  2NCZ A;  2ELB A;  4AZH A;  2QKW A;  4EZW A;  4EZS A;  1DKX A;  3L3P A;  1W9M A;  4EZQ A;  3BUB A;  4B9Q A;  4IM0 A;  2MI7 A;  2QXL A;  2YIA A;  3DYT A;  2D4C A;  1GNT A;  2YIB A;  4FZP A;  3CV5 A;  4IWO A;  5C5B B;  3CKD A;  3F7W A;  5TKY A;  1SU6 A;  3BUP A;  2F7Q A;  2FYV A;  3BUI A;  4DCN C;  4JL9 A;  3HAH A;  1QWN A;  2KHO A;  4JN4 A;  2X5C A;  1E9V A;  1YWM A;  4AZG A;  3EJU A;  3CVR A;  4DYL A;  3DDF A;  3PLT A;  2V0O A;  3A98 A;  3RPM A;  2LXY A;  1Y2O A;  3L3O M;  3ABH A;  3Q0K A;  3ZED A;  4NQI A;  5FLE X;  3D2F A;  3QWE A;  3EJQ A;  3CAZ A;  1TQT A; 
#chains in the Genus database with same CATH homology
 1E2U A;  4NPH A;  3I01 A;  2GA9 D;  2OBM A;  2ND0 A;  1DKZ A;  2Z8Y A;  4R5J A;  1JQK A;  4EZO A;  4HY9 A;  3DPQ A;  4E3C A;  4EZN A;  4R5G A;  1E1D A;  4FM3 A;  3DPP A;  4R5I A;  4EZP A;  4KIK A;  3C7N A;  4D8J A;  3RV0 A;  3ER9 B;  4EZT A;  2N3K A;  2NCZ A;  4JNE A;  4F00 A;  4HR1 A;  4EZW A;  4JNF A;  3FD9 A;  4EZS A;  1DKX A;  3O3M B;  4EZX A;  3O3N B;  3D2E A;  3QA8 A;  3I39 X;  3ER8 C;  1W9M A;  1SUF A;  4EZQ A;  3DPO A;  3QNJ A;  2JNS A;  2YI8 A;  3KAW A;  3LMF A;  4B9Q A;  3OWG A;  4JLC A;  4IM0 A;  3T48 A;  3KDR A;  2QXL A;  2YIA A;  4HYB A;  1U00 A;  4UDX X;  1UPX A;  4R5L A;  1GNT A;  2YIB A;  1GNL A;  3UIT A;  2EX3 B;  1MJG A;  5E84 A;  4IWO A;  4HR1 B;  3F7W A;  5TKY A;  5FIG A;  3GI7 A;  3VEA A;  4IM2 A;  4JWE A;  3T49 A;  3VKH A;  1SU6 A;  2PY6 A;  4JWD A;  4E81 A;  4JL9 A;  2YIV X;  2RT6 A;  4EZY A;  1DKY A;  2YI9 A;  3T47 A;  3B53 X;  2KHO A;  4H6I A;  4M0M A;  4EZU A;  4JN4 A;  4KIK B;  3RV1 A;  4EZZ A;  2X5C A;  3B52 X;  1E9V A;  2LM0 A;  3O3O B;  4R5K A;  3T46 A;  1OA0 A;  3VEB A;  4IM3 A;  1SU7 A;  1OAO A;  1ZYL A;  4IWQ A;  3OHX M;  3B51 X;  2OBL A;  1SU8 A;  4H6H A;  3T4A G;  4JWI A;  3ERC C;  4IW0 A;  2WIN M;  3A98 A;  2ND1 A;  2QFF A;  4IWP A;  4JWC A;  4F01 A;  3KAV A;  4PO2 A;  4UDY X;  4EZV A;  3L3O M;  2GAF D;  3ZED A;  1GN9 A;  5FLE X;  3I04 A;  3D2F A;  4EZR A;  1OA1 A;  4G6Q A;  2EWF A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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