2ND0A

Solution nmr structures of brd4 et domain with lana peptide
Total Genus 27

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
sequence length
83
structure length
83
Chain Sequence
SEEEDKCKPMSYEEKRQLSLDINKLPGEKLGRVVHIIQSREPSLKNSNPDEIEIDFETLKPSTLRELERYVTSCLRKKRKPQA

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (2-6)AH4 (61-76)3H2 (56-58)AH2 (12-24)AH3 (27-40)TI1 (44-47)3H1 (42-44)EMPTYTI2 (48-51)TVIII1 (76-79)Updating...
connected with : NaN
molecule tags Transcription/viral protein
source organism Homo sapiens
publication title Structural Mechanism of Transcriptional Regulator NSD3 Recognition by the ET Domain of BRD4.
pubmed doi rcsb
molecule keywords Bromodomain-containing protein 4
total genus 27
structure length 83
sequence length 83
ec nomenclature
pdb deposition date 2016-04-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF17035 BET Bromodomain extra-terminal - transcription regulation
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1270.220 Mainly Alpha Up-down Bundle Substrate Binding Domain Of Dnak; Chain:A; Domain 2 Substrate Binding Domain Of Dnak; Chain:A; Domain 2 2nd0A01
2JNSA 2ND1A 2ND0A 2N3KA 2NCZA
chains in the Genus database with same CATH superfamily
3D50A 1LQ7A 4WPEA 3Q0KA 3KDRA 3DDGA 4ATMA 2WYIA 2WINM 4IWOA 3SOGA 2F1BA 4IW0A 2Z0VA 3F7WA 4F01A 3L3PA 4F00A 3BUBA 3EJRA 1O7DC 3I01A 1DKYA 1E9VA 1R34A 3DX4A 3BUQA 2Z0OA 1TQSA 2EX3B 1SUFA 2YKTA 4JLCA 4NSWA 1TQVA 4KIKA 3M3WA 1TQTA 2N3KA 3ACOA 2C08A 4FM3A 5FLEX 1HTYA 3GI7A 2Z8YA 1ZYLA 2X3XA 3EJPA 4EZQA 3VEBA 2PY6A 3BVTA 3B53X 3HAHA 1PS3A 3A98A 4R5LA 4JNFA 3QA8A 4DYLA 4EZUA 3RPMA 2OZNB 2JNKA 3D4ZA 3LLLA 3B51X 1O7DB 4EZRA 4R5GA 3T47A 2Z0NA 2QFFA 3ABHA 2RAKA 4AVMA 4AZCA 3LMFA 2EFLA 4EZVA 4BNEA 4HY9A 1WDZA 4AZ5A 1I4LA 2X3WA 1TQWA 4IM3A 2FYVA 3DPOA 4HR1A 4AZ6A 2OO2A 4I1QA 4E81A 3ERCC 3QE6A 3BVXA 3CAZA 2RT6A 2YLAA 2D1LA 1I4TA 3C7NA 4E3CA 1TQUA 2NCZA 1HXKA 4D8JA 4JWDA 1DKZA 2QXLA 3HAIA 3BVUA 1Y2OA 4EZXA 4IWQA 4EZTA 3CKDA 4NQIA 3BUIA 1X04A 4H6IA 4EZPA 3Q84A 5FIGA 3I2WA 2EFKA 1GNLA 2RAJA 2ND0A 4AZ7A 1YWMA 4JNEA 4JWIA 5KBPA 3DX0A 1E1DA 1OA0A 4KIKB 3G9GA 3D52A 3EJSA 1QX1A 3CZSA 4JL9A 4AZHA 3KAWA 2YL8A 4HYBA 2F7OA 1URUA 3VKHA 3DDFA 2F7QA 4JWCA 3T46A 3ER8C 4EZWA 3D51A 4R5KA 2V0OA 1GNTA 1JQKA 2OW6A 4AZBA 4AZIA 3DPPA 2YI8A 4UDXX 2GA9D 4R5JA 5C5BA 1DKXA 3SYVA 2YIAA 2YL9A 4IM0A 4AZGA 4UDYX 3VEAA 4R5IA 1E2UA 4AZCB 2MI7A 2YIVX 3DX3A 3QNIA 2F7PA 1GN9A 3D2FA 3I04A 3O3MB 3ZEDA 2OBMA 2F18A 4EZNA 1MJGA 4EZSA 3BUDA 2LM0A 3KAVA 4HR1B 4IM2A 3D4YA 1W9MA 2OW7A 2WYHA 4AKVA 3DPQA 1HWWA 2LXYA 2Q13A 3DX2A 5TKYA 3BVWA 1SU7A 2GAFD 3HAJA 1I49A 3DYTA 2GF4A 3B52X 4H8SA 2YLLA 1SU8A 3EJUA 4EZYA 1QWNA 1ZWWA 2X5CA 3I39X 3D2EA 4EZOA 2JNSA 2YI9A 4JWEA 1SU6A 3OWGA 4H6HA 3CV5A 2QKWA 4IWPA 2Q12A 1R33A 4NPHA 3EJQA 4EZZA 2O0I1 2RAIA 3QWEA 4FZSA 2EWFA 4WPCA 1U00A 3OK8A 3PLTA 4FZPA 3ER9B 2ALWA 3T49A 3FD9A 3OHXM 3O3NB 3UITA 1R5EA 1OAOA 4M0MA 3RV1A 3CZNA 3CVRA 2YL6A 3O3OB 2YIBA 4G6QA 2YL5A 3LVTA 2D4CA 2F1AA 2OBLA 2ZXQA 3BLBA 5E84A 3DX1A 5C5BB 3BVVA 3QNJA 2FICA 3EJTA 4JN4A 2ND1A 2F7RA 1QWUA 4FZOA 2X3VA 3T4AG 4DCNC 1UPXA 1X03A 3BUPA 2ELBA 3RV0A 4PO2A 2PMRA 4B9QA 3L3OM 3T48A 1I4DA 2KHOA 1OA1A
chains in the Genus database with same CATH topology
2JNSA 2YI9A 4HYBA 3LMFA 3KDRA 4JWEA 1SU6A 3OWGA 4EZVA 2WINM 4IWOA 3VKHA 4HY9A 4IW0A 3F7WA 4H6HA 4JWCA 4F01A 4IWPA 4F00A 3T46A 3ER8C 4IM3A 4EZWA 3DPOA 4HR1A 4NPHA 3I01A 4R5KA 3ERCC 1DKYA 1E9VA 4E81A 1GNTA 1JQKA 4EZZA 2EX3B 2RT6A 3DPPA 2YI8A 1SUFA 2EWFA 4UDXX 1U00A 2GA9D 4R5JA 1DKXA 4JLCA 3C7NA 4E3CA 2YIAA 2NCZA 4D8JA 4IM0A 3ER9B 3T49A 4KIKA 4UDYX 4JWDA 3FD9A 1DKZA 2QXLA 3VEAA 3OHXM 2N3KA 4R5IA 1E2UA 3O3NB 3UITA 4FM3A 5FLEX 2YIVX 4EZXA 4IWQA 1GN9A 3D2FA 3O3MB 1OAOA 3GI7A 3I04A 3ZEDA 4M0MA 2Z8YA 3RV1A 4EZTA 1ZYLA 2OBMA 4EZNA 1MJGA 4EZSA 2LM0A 3KAVA 4HR1B 3O3OB 4IM2A 2YIBA 4G6QA 1W9MA 4EZQA 3VEBA 2PY6A 3DPQA 2OBLA 3B53X 4H6IA 4EZPA 5TKYA 5FIGA 3A98A 5E84A 4R5LA 4JNFA 1SU7A 1GNLA 2GAFD 2ND0A 4JNEA 3QNJA 4JWIA 3B52X 3QA8A 4JN4A 2ND1A 1E1DA 1SU8A 1OA0A 4EZUA 4KIKB 3T4AG 4EZYA 1UPXA 2X5CA 3I39X 3D2EA 3RV0A 3B51X 4EZRA 4EZOA 4PO2A 4R5GA 4JL9A 3T47A 4B9QA 3L3OM 3T48A 2QFFA 2KHOA 3KAWA 1OA1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2JNS A;  2ND1 A;  2ND0 A;  2N3K A;  2NCZ A; 
#chains in the Genus database with same CATH topology
 3D50 A;  1LQ7 A;  4WPE A;  3Q0K A;  3KDR A;  3DDG A;  4ATM A;  2WYI A;  2WIN M;  4IWO A;  3SOG A;  2F1B A;  4IW0 A;  2Z0V A;  3F7W A;  4F01 A;  3L3P A;  4F00 A;  3BUB A;  3EJR A;  1O7D C;  3I01 A;  1DKY A;  1E9V A;  1R34 A;  3DX4 A;  3BUQ A;  2Z0O A;  1TQS A;  2EX3 B;  1SUF A;  2YKT A;  4JLC A;  4NSW A;  1TQV A;  4KIK A;  3M3W A;  1TQT A;  2N3K A;  3ACO A;  2C08 A;  4FM3 A;  5FLE X;  1HTY A;  3GI7 A;  2Z8Y A;  1ZYL A;  2X3X A;  3EJP A;  4EZQ A;  3VEB A;  2PY6 A;  3BVT A;  3B53 X;  3HAH A;  1PS3 A;  3A98 A;  4R5L A;  4JNF A;  3QA8 A;  4DYL A;  4EZU A;  3RPM A;  2OZN B;  2JNK A;  3D4Z A;  3LLL A;  3B51 X;  1O7D B;  4EZR A;  4R5G A;  3T47 A;  2Z0N A;  2QFF A;  3ABH A;  2RAK A;  4AVM A;  4AZC A;  3LMF A;  2EFL A;  4EZV A;  4BNE A;  4HY9 A;  1WDZ A;  4AZ5 A;  1I4L A;  2X3W A;  1TQW A;  4IM3 A;  2FYV A;  3DPO A;  4HR1 A;  4AZ6 A;  2OO2 A;  4I1Q A;  4E81 A;  3ERC C;  3QE6 A;  3BVX A;  3CAZ A;  2RT6 A;  2YLA A;  2D1L A;  1I4T A;  3C7N A;  4E3C A;  1TQU A;  2NCZ A;  1HXK A;  4D8J A;  4JWD A;  1DKZ A;  2QXL A;  3HAI A;  3BVU A;  1Y2O A;  4EZX A;  4IWQ A;  4EZT A;  3CKD A;  4NQI A;  3BUI A;  1X04 A;  4H6I A;  4EZP A;  3Q84 A;  5FIG A;  3I2W A;  2EFK A;  1GNL A;  2RAJ A;  2ND0 A;  4AZ7 A;  1YWM A;  4JNE A;  4JWI A;  5KBP A;  3DX0 A;  1E1D A;  1OA0 A;  4KIK B;  3G9G A;  3D52 A;  3EJS A;  1QX1 A;  3CZS A;  4JL9 A;  4AZH A;  3KAW A;  2YL8 A;  4HYB A;  2F7O A;  1URU A;  3VKH A;  3DDF A;  2F7Q A;  4JWC A;  3T46 A;  3ER8 C;  4EZW A;  3D51 A;  4R5K A;  2V0O A;  1GNT A;  1JQK A;  2OW6 A;  4AZB A;  4AZI A;  3DPP A;  2YI8 A;  4UDX X;  2GA9 D;  4R5J A;  5C5B A;  1DKX A;  3SYV A;  2YIA A;  2YL9 A;  4IM0 A;  4AZG A;  4UDY X;  3VEA A;  4R5I A;  1E2U A;  4AZC B;  2MI7 A;  2YIV X;  3DX3 A;  3QNI A;  2F7P A;  1GN9 A;  3D2F A;  3I04 A;  3O3M B;  3ZED A;  2OBM A;  2F18 A;  4EZN A;  1MJG A;  4EZS A;  3BUD A;  2LM0 A;  3KAV A;  4HR1 B;  4IM2 A;  3D4Y A;  1W9M A;  2OW7 A;  2WYH A;  4AKV A;  3DPQ A;  1HWW A;  2LXY A;  2Q13 A;  3DX2 A;  5TKY A;  3BVW A;  1SU7 A;  2GAF D;  3HAJ A;  1I49 A;  3DYT A;  2GF4 A;  3B52 X;  4H8S A;  2YLL A;  1SU8 A;  3EJU A;  4EZY A;  1QWN A;  1ZWW A;  2X5C A;  3I39 X;  3D2E A;  4EZO A;  2JNS A;  2YI9 A;  4JWE A;  1SU6 A;  3OWG A;  4H6H A;  3CV5 A;  2QKW A;  4IWP A;  2Q12 A;  1R33 A;  4NPH A;  3EJQ A;  4EZZ A;  2O0I 1;  2RAI A;  3QWE A;  4FZS A;  2EWF A;  4WPC A;  1U00 A;  3OK8 A;  3PLT A;  4FZP A;  3ER9 B;  2ALW A;  3T49 A;  3FD9 A;  3OHX M;  3O3N B;  3UIT A;  1R5E A;  1OAO A;  4M0M A;  3RV1 A;  3CZN A;  3CVR A;  2YL6 A;  3O3O B;  2YIB A;  4G6Q A;  2YL5 A;  3LVT A;  2D4C A;  2F1A A;  2OBL A;  2ZXQ A;  3BLB A;  5E84 A;  3DX1 A;  5C5B B;  3BVV A;  3QNJ A;  2FIC A;  3EJT A;  4JN4 A;  2ND1 A;  2F7R A;  1QWU A;  4FZO A;  2X3V A;  3T4A G;  4DCN C;  1UPX A;  1X03 A;  3BUP A;  2ELB A;  3RV0 A;  4PO2 A;  2PMR A;  4B9Q A;  3L3O M;  3T48 A;  1I4D A;  2KHO A;  1OA1 A; 
#chains in the Genus database with same CATH homology
 2JNS A;  2YI9 A;  4HYB A;  3LMF A;  3KDR A;  4JWE A;  1SU6 A;  3OWG A;  4EZV A;  2WIN M;  4IWO A;  3VKH A;  4HY9 A;  4IW0 A;  3F7W A;  4H6H A;  4JWC A;  4F01 A;  4IWP A;  4F00 A;  3T46 A;  3ER8 C;  4IM3 A;  4EZW A;  3DPO A;  4HR1 A;  4NPH A;  3I01 A;  4R5K A;  3ERC C;  1DKY A;  1E9V A;  4E81 A;  1GNT A;  1JQK A;  4EZZ A;  2EX3 B;  2RT6 A;  3DPP A;  2YI8 A;  1SUF A;  2EWF A;  4UDX X;  1U00 A;  2GA9 D;  4R5J A;  1DKX A;  4JLC A;  3C7N A;  4E3C A;  2YIA A;  2NCZ A;  4D8J A;  4IM0 A;  3ER9 B;  3T49 A;  4KIK A;  4UDY X;  4JWD A;  3FD9 A;  1DKZ A;  2QXL A;  3VEA A;  3OHX M;  2N3K A;  4R5I A;  1E2U A;  3O3N B;  3UIT A;  4FM3 A;  5FLE X;  2YIV X;  4EZX A;  4IWQ A;  1GN9 A;  3D2F A;  3O3M B;  1OAO A;  3GI7 A;  3I04 A;  3ZED A;  4M0M A;  2Z8Y A;  3RV1 A;  4EZT A;  1ZYL A;  2OBM A;  4EZN A;  1MJG A;  4EZS A;  2LM0 A;  3KAV A;  4HR1 B;  3O3O B;  4IM2 A;  2YIB A;  4G6Q A;  1W9M A;  4EZQ A;  3VEB A;  2PY6 A;  3DPQ A;  2OBL A;  3B53 X;  4H6I A;  4EZP A;  5TKY A;  5FIG A;  3A98 A;  5E84 A;  4R5L A;  4JNF A;  1SU7 A;  1GNL A;  2GAF D;  2ND0 A;  4JNE A;  3QNJ A;  4JWI A;  3B52 X;  3QA8 A;  4JN4 A;  2ND1 A;  1E1D A;  1SU8 A;  1OA0 A;  4EZU A;  4KIK B;  3T4A G;  4EZY A;  1UPX A;  2X5C A;  3I39 X;  3D2E A;  3RV0 A;  3B51 X;  4EZR A;  4EZO A;  4PO2 A;  4R5G A;  4JL9 A;  3T47 A;  4B9Q A;  3L3O M;  3T48 A;  2QFF A;  2KHO A;  3KAW A;  1OA1 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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