2O0I | Genus

Total Genus 52

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	52
sequence length	180
structure length	180
Chain Sequence	STIPGSAATLNTSITKNIQNGNAYIDLYDVKLGKIDPLQLIVLEQGFTAKYVFRQGTKYYGDVSQLQSTGRASLTYNIFGEDGLPHVKTDGQIDIVSVALTIYDSTTLRDKIEEVRTNANDPKWTEESATEVLTGLDTIKTDIDNNPKTQTDIDSKIVEVNELEKLLVLKLAAALEHHHH

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Surface active protein
source organism	Streptococcus agalactiae serogroup ia
publication title	Identification of a glycosaminoglycan binding region of the alpha C protein that mediates entry of group B streptococci into host cells. pubmed doi rcsb
molecule keywords	C protein alpha-antigen
total genus	52
structure length	180
sequence length	180
ec nomenclature
pdb deposition date	2006-11-27

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
1	PF08829	AlphaC_N	Alpha C protein N terminal

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.20.1270.150	Mainly Alpha	Up-down Bundle	Substrate Binding Domain Of Dnak; Chain:A; Domain 2	Surface Active Protein	2o0i102
2.60.500.10	Mainly Beta	Sandwich	Surface Active Protein fold	Surface Active Protein domain	2o0i101

2O0I1 1YWMA
chains in the Genus database with same CATH superfamily

4UDYX 2F1BA 3L3PA 3I2WA 1YWMA 3DPQA 2OBLA 3VEBA 4NPHA 2RAKA 1HXKA 1OAOA 3ACOA 1SU6A 2X3VA 3B51X 2GA9D 4EZPA 3BVVA 1R5EA 3KAVA 2F18A 4R5LA 3DPOA 3PLTA 3RPMA 2F7OA 2OW6A 2QFFA 4AZGA 4EZTA 2EX3B 4AZCA 3CZSA 1U00A 4EZUA 4EZRA 3I39X 3B52X 2X5CA 1X04A 1URUA 2YI8A 3EJUA 1QWNA 4JNFA 4R5KA 3QNJA 4I1QA 4F00A 4G6QA 3ERCC 3BVUA 1SU8A 2Z0VA 1QX1A 3HAJA 4R5IA 3QA8A 4AVMA 4F01A 1I4DA 2O0I1 2V0OA 3DX1A 2OZNB 4IM0A 4DCNC 3M3WA 4NQIA 4JWCA 1JQKA 3I04A 3C7NA 2X3XA 2JNSA 2JNKA 2LM0A 2NCZA 4JWIA 4AZBA 1R34A 4AZIA 1QWUA 1ZYLA 2QKWA 3SYVA 4BNEA 2YL5A 3RV0A 2EFKA 4EZSA 3DYTA 3RV1A 2Q13A 1TQSA 2Q12A 1PS3A 1TQVA 2GAFD 1TQWA 4HR1B 2ND1A 4JWDA 2PMRA 3ABHA 1OA1A 4JL9A 4PO2A 3QWEA 5C5BA 4IM3A 3CKDA 3QNIA 2YIAA 2MI7A 3D2FA 3BVTA 2Z0NA 1TQTA 4EZVA 4EZZA 4FZOA 4IWQA 1GN9A 4WPEA 3CAZA 3CV5A 3T48A 3D51A 4WPCA 2C08A 4AZCB 2ALWA 1WDZA 2YI9A 3T46A 1DKXA 2D1LA 4KIKB 3HAIA 3SOGA 1ZWWA 1I49A 3L3OM 4NSWA 3BVXA 3VKHA 2WINM 2YKTA 2EWFA 1R33A 3OHXM 2PY6A 3O3OB 5TKYA 1MJGA 4R5JA 4IWPA 4HY9A 3Q84A 3BUQA 4E81A 2F1AA 2GF4A 4H6IA 3EJTA 1E1DA 2ELBA 1E9VA 2OW7A 4DYLA 2RAIA 3DX0A 4R5GA 1UPXA 1I4TA 3GI7A 3HAHA 3A98A 3O3NB 2YLAA 2X3WA 3KAWA 1SU7A 2FICA 1E2UA 4JWEA 2YL8A 1X03A 3UITA 3B53X 4ATMA 3FD9A 3DDGA 2YL6A 3LVTA 4AZHA 3DX2A 5E84A 3DDFA 3D50A 2ZXQA 3ER8C 2RT6A 4HR1A 3T49A 4EZOA 5C5BB 3BUDA 4AZ5A 1W9MA 5FIGA 4EZQA 4AKVA 3T4AG 3LLLA 3CZNA 3T47A 4FM3A 3EJPA 2Z8YA 4H6HA 2QXLA 3D2EA 4EZNA 3OWGA 1O7DB 4FZPA 2YL9A 3QE6A 3BUBA 2F7RA 4H8SA 2F7QA 3EJQA 3I01A 2WYIA 1HTYA 2D4CA 3EJSA 3CVRA 1O7DC 4KIKA 1OA0A 2YIBA 1HWWA 3G9GA 1SUFA 3VEAA 1DKYA 1GNTA 4AZ6A 3EJRA 1TQUA 3BUIA 1LQ7A 3OK8A 3LMFA 4EZYA 4EZWA 2FYVA 3O3MB 3BLBA 2RAJA 2KHOA 4JNEA 2YLLA 2YIVX 3ER9B 4EZXA 3D4ZA 4IW0A 4JN4A 3DPPA 3Q0KA 2Z0OA 1Y2OA 2ND0A 3DX3A 5KBPA 2F7PA 1DKZA 4D8JA 3D52A 3BVWA 4JLCA 3KDRA 1GNLA 4FZSA 2WYHA 4E3CA 2EFLA 3D4YA 4HYBA 2OBMA 4AZ7A 3DX4A 4IM2A 5FLEX 4B9QA 4M0MA 3ZEDA 3BUPA 3F7WA 2OO2A 2LXYA 4UDXX 4IWOA 2N3KA 1I4LA
chains in the Genus database with same CATH topology

2O0I1 1YWMA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 2O0I 1;  1YWM A; 
#chains in the Genus database with same CATH topology
 4UDY X;  2F1B A;  3L3P A;  3I2W A;  1YWM A;  3DPQ A;  2OBL A;  3VEB A;  4NPH A;  2RAK A;  1HXK A;  1OAO A;  3ACO A;  1SU6 A;  2X3V A;  3B51 X;  2GA9 D;  4EZP A;  3BVV A;  1R5E A;  3KAV A;  2F18 A;  4R5L A;  3DPO A;  3PLT A;  3RPM A;  2F7O A;  2OW6 A;  2QFF A;  4AZG A;  4EZT A;  2EX3 B;  4AZC A;  3CZS A;  1U00 A;  4EZU A;  4EZR A;  3I39 X;  3B52 X;  2X5C A;  1X04 A;  1URU A;  2YI8 A;  3EJU A;  1QWN A;  4JNF A;  4R5K A;  3QNJ A;  4I1Q A;  4F00 A;  4G6Q A;  3ERC C;  3BVU A;  1SU8 A;  2Z0V A;  1QX1 A;  3HAJ A;  4R5I A;  3QA8 A;  4AVM A;  4F01 A;  1I4D A;  2O0I 1;  2V0O A;  3DX1 A;  2OZN B;  4IM0 A;  4DCN C;  3M3W A;  4NQI A;  4JWC A;  1JQK A;  3I04 A;  3C7N A;  2X3X A;  2JNS A;  2JNK A;  2LM0 A;  2NCZ A;  4JWI A;  4AZB A;  1R34 A;  4AZI A;  1QWU A;  1ZYL A;  2QKW A;  3SYV A;  4BNE A;  2YL5 A;  3RV0 A;  2EFK A;  4EZS A;  3DYT A;  3RV1 A;  2Q13 A;  1TQS A;  2Q12 A;  1PS3 A;  1TQV A;  2GAF D;  1TQW A;  4HR1 B;  2ND1 A;  4JWD A;  2PMR A;  3ABH A;  1OA1 A;  4JL9 A;  4PO2 A;  3QWE A;  5C5B A;  4IM3 A;  3CKD A;  3QNI A;  2YIA A;  2MI7 A;  3D2F A;  3BVT A;  2Z0N A;  1TQT A;  4EZV A;  4EZZ A;  4FZO A;  4IWQ A;  1GN9 A;  4WPE A;  3CAZ A;  3CV5 A;  3T48 A;  3D51 A;  4WPC A;  2C08 A;  4AZC B;  2ALW A;  1WDZ A;  2YI9 A;  3T46 A;  1DKX A;  2D1L A;  4KIK B;  3HAI A;  3SOG A;  1ZWW A;  1I49 A;  3L3O M;  4NSW A;  3BVX A;  3VKH A;  2WIN M;  2YKT A;  2EWF A;  1R33 A;  3OHX M;  2PY6 A;  3O3O B;  5TKY A;  1MJG A;  4R5J A;  4IWP A;  4HY9 A;  3Q84 A;  3BUQ A;  4E81 A;  2F1A A;  2GF4 A;  4H6I A;  3EJT A;  1E1D A;  2ELB A;  1E9V A;  2OW7 A;  4DYL A;  2RAI A;  3DX0 A;  4R5G A;  1UPX A;  1I4T A;  3GI7 A;  3HAH A;  3A98 A;  3O3N B;  2YLA A;  2X3W A;  3KAW A;  1SU7 A;  2FIC A;  1E2U A;  4JWE A;  2YL8 A;  1X03 A;  3UIT A;  3B53 X;  4ATM A;  3FD9 A;  3DDG A;  2YL6 A;  3LVT A;  4AZH A;  3DX2 A;  5E84 A;  3DDF A;  3D50 A;  2ZXQ A;  3ER8 C;  2RT6 A;  4HR1 A;  3T49 A;  4EZO A;  5C5B B;  3BUD A;  4AZ5 A;  1W9M A;  5FIG A;  4EZQ A;  4AKV A;  3T4A G;  3LLL A;  3CZN A;  3T47 A;  4FM3 A;  3EJP A;  2Z8Y A;  4H6H A;  2QXL A;  3D2E A;  4EZN A;  3OWG A;  1O7D B;  4FZP A;  2YL9 A;  3QE6 A;  3BUB A;  2F7R A;  4H8S A;  2F7Q A;  3EJQ A;  3I01 A;  2WYI A;  1HTY A;  2D4C A;  3EJS A;  3CVR A;  1O7D C;  4KIK A;  1OA0 A;  2YIB A;  1HWW A;  3G9G A;  1SUF A;  3VEA A;  1DKY A;  1GNT A;  4AZ6 A;  3EJR A;  1TQU A;  3BUI A;  1LQ7 A;  3OK8 A;  3LMF A;  4EZY A;  4EZW A;  2FYV A;  3O3M B;  3BLB A;  2RAJ A;  2KHO A;  4JNE A;  2YLL A;  2YIV X;  3ER9 B;  4EZX A;  3D4Z A;  4IW0 A;  4JN4 A;  3DPP A;  3Q0K A;  2Z0O A;  1Y2O A;  2ND0 A;  3DX3 A;  5KBP A;  2F7P A;  1DKZ A;  4D8J A;  3D52 A;  3BVW A;  4JLC A;  3KDR A;  1GNL A;  4FZS A;  2WYH A;  4E3C A;  2EFL A;  3D4Y A;  4HYB A;  2OBM A;  4AZ7 A;  3DX4 A;  4IM2 A;  5FLE X;  4B9Q A;  4M0M A;  3ZED A;  3BUP A;  3F7W A;  2OO2 A;  2LXY A;  4UDX X;  4IWO A;  2N3K A;  1I4L A; 
#chains in the Genus database with same CATH homology
 2O0I 1;  1YWM A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2O0I1

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations