The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
64
|
sequence length |
232
|
structure length |
214
|
Chain Sequence |
GIPKVILPADFNKCSRTDLVVLISRMLVSLIAINENSITLTRYHSKIPPNISIFNYFIRLTKFSSLEHCVLMTSLYYIDLLQTVYPDFTLNSLTAHRFLLTATTVATKGLCDSFSTNAHYAKVGGVRCHELNILENDFLKRVNYRIIPRDHNITLCSIEQKQKKFVIDKNSYVNRPKSGYNVLDKYYRRIVQLVGSFNASPDKSRKVDYVLPPN
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Structure of the Pho85-Pho80 CDK-Cyclin Complex of the Phosphate-Responsive Signal Transduction Pathway
pubmed doi rcsb |
| molecule tags |
Signaling protein,transferase/cell cycle
|
| source organism |
Saccharomyces cerevisiae
|
| molecule keywords |
Cyclin-dependent protein kinase PHO85
|
| total genus |
64
|
| structure length |
214
|
| sequence length |
232
|
| chains with identical sequence |
D
|
| ec nomenclature | |
| pdb deposition date | 2007-04-17 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| B | PF08613 | Cyclin | Cyclin |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Orthogonal Bundle | Cyclin A; domain 1 | Cyclin-like |
#chains in the Genus database with same CATH superfamily 2IVX A; 3BLQ B; 2WMA B; 2JGZ B; 4EOR B; 2BPM B; 3EJ1 B; 4Y72 B; 4CFN B; 2UZL B; 1D3U B; 1N4M A; 1OGU B; 2CJM B; 4BCM B; 4CRL B; 3QHR B; 1VYW B; 2C5V B; 3POM A; 4BCN B; 4BCN D; 4EOK B; 2WIP B; 1E9H B; 2C5N B; 2QDJ A; 2IW9 B; 4ELL A; 5CEI B; 1VOL A; 3DDP B; 4F6S B; 4FX3 B; 1UNL D; 5LMK B; 4OR5 B; 5HVY B; 3BLH B; 1XO2 A; 1OI9 B; 4CFW B; 5HBE B; 5HBH B; 2W9Z A; 3G33 B; 4EC8 B; 4F7N B; 4F6W B; 2W96 A; 4UN0 A; 4BCQ B; 4EOO B; 2WEV B; 3F5X B; 3DDQ B; 4YOS A; 3EOC B; 4F7J B; 2PK9 B; 2IW6 B; 4F70 B; 1H1Q B; 4YOO A; 2F2C A; 1URC B; 2G9X B; 4BCM D; 1OKW B; 1O9K B; 2C5O B; 4EOI B; 1H24 B; 2CCH B; 5L2W B; 4BCG B; 3RGF B; 1C9B A; 1FIN B; 4TTH A; 3DOG B; 5IDN B; 4BCI B; 3O0G D; 4EOQ B; 3MY5 B; 2WPA B; 4EON B; 3M03 A; 4BCF B; 5HBJ B; 1OKV B; 4EOP B; 3TNW B; 4EOL B; 1JST B; 1OIY B; 1OL1 B; 4BCK B; 4CXA B; 1UNH D; 2C4G B; 4BCQ D; 1H27 B; 2PMI B; 4ROC A; 1ZP2 A; 1TFB A; 2W9F A; 1OL2 B; 1JOW A; 2EUF A; 2W2H A; 1H1R B; 1OIU B; 3TN8 B; 3MY1 B; 4EC9 B; 2W99 A; 1H4L D; 4F7S B; 5EFQ B; 4F7L B; 3MI9 B; 2I53 A; 5BNJ B; 2UUE B; 4G6L B; 4KRC B; 1BU2 A; 5FGK B; 4EOS B; 2B9R A; 3MIA B; 4F6U B; 2IW8 B; 4ROD A; 5CYI B; 2UZB B; 3EID B; 4IMY B; 1QMZ B; 5ACB A; 5IF1 B; 5LQF B; 3BHT B; 2BKZ B; 2R7G A; 2WXV B; 4CFM B; 1O9K A; 1GUX B; 2WFY B; 4ELJ A; 4CFX B; 5I5Z B; 3BLR B; 4II5 B; 4YOZ A; 5IDP B; 1H1S B; 1UNG D; 1FVV B; 1H28 B; 1H26 B; 4OGR B; 2C5X B; 4KRD B; 3TNH B; 2C6T B; 4ROE A; 4BCO B; 4CFU B; 2UZD B; 4YC3 B; 4CFU D; 1P5E B; 4BCP B; 1G3N C; 2WHB B; 3QHW B; 2PHG A; 4EOM B; 1W98 B; 4BCJ B; 1KXU A; 3TNI B; 1JSU B; 4EOJ B; 4BCH B; 2CCI B; 1VIN A; 2I40 B; 1GY3 B; 2PK2 A; 2UZE B; 4CFV B; 5HNB B; 1GH6 B; 5HQ0 B; 4NST B; 3H4C A; 2WMB B; 3K7A M; 3BHU B; 1AIS B; 3BHV B; 1PKD B; 3LQ5 B; 2X1N B; 4I3Z B; 1AD6 A; 1JKW A; 2WIH B; 1H25 B; 5ICP B; 1GUX A; 1F5Q B; 1H1P B; 2V22 B; #chains in the Genus database with same CATH topology 4EOR B; 5EJC A; 3EJ1 B; 1D3U B; 1OGU B; 1TD6 A; 2CJM B; 4CRL B; 3POM A; 4FM4 B; 4BCN D; 4MFD A; 3WVE B; 3QZ9 B; 4EOK B; 2QDJ A; 2IW9 B; 2ZCF B; 4AKH A; 4Z6Y A; 5HVY B; 4BCQ B; 4YOS A; 1QLB A; 2D0Q B; 5DQW A; 2QF7 A; 1H1Q B; 2G9X B; 2CCH B; 4JX6 A; 5L2W B; 5IDN B; 4BCI B; 4EOQ B; 3MY5 B; 4EON B; 3M03 A; 3BG3 A; 5HBJ B; 2ZZD B; 3TNW B; 2LW4 A; 3QYB A; 3HZJ A; 1UNH D; 4ROC A; 1ZP2 A; 1TFB A; 4AI6 A; 4F7L B; 4F7S B; 3MY1 B; 4HNU A; 3MI9 B; 4EOS B; 4KRC B; 3MIA B; 1QMZ B; 2BKZ B; 1O9K A; 4HNT A; 5I5Z B; 4BBR M; 1H28 B; 4OGR B; 5DQV A; 4BY7 X; 1G3N C; 2QDY B; 2I40 B; 4OB3 B; 5HNB B; 2DXC B; 5HQ0 B; 3TW6 A; 3H4C A; 3K7A M; 3BHV B; 3QYG B; 1PKD B; 3LQ5 B; 1H25 B; 1GUX A; 2WEV B; 1F5Q B; 2V22 B; 2WMA B; 2BPM B; 4CFN B; 4BCM B; 3QHR B; 3QXE B; 1V29 B; 1UGR B; 3HHT B; 5LMK B; 3BLH B; 1XO2 A; 2DPP B; 5HBE B; 5HBH B; 4EC8 B; 4F6W B; 2PJQ A; 3HO8 A; 4QSH A; 2KMG A; 2IN3 A; 4BY1 X; 3X20 B; 1O9K B; 2C5O B; 3WVD B; 1H24 B; 3A8O B; 3RGF B; 3O0G D; 1OIY B; 2CZ1 B; 4CXA B; 3X25 B; 4BXX X; 3QZ5 B; 4OB0 B; 3BG5 A; 4EC9 B; 5BNJ B; 5FGK B; 4F6U B; 2IW8 B; 4ROD A; 1UGP B; 2ZPB B; 3EID B; 5LQF B; 3BHT B; 2R7G A; 2WXV B; 2DXB B; 4CFM B; 1GUX B; 4ZGJ B; 4YOZ A; 5IDP B; 1H1S B; 1H26 B; 2C5X B; 4KRD B; 4ROE A; 4CFU B; 4YC3 B; 1P5E B; 2WHB B; 2PHG A; 4EOM B; 3VKG A; 1KXU A; 4MIM A; 3BG9 A; 2UZE B; 1GH6 B; 4JX4 A; 3TW7 A; 2BS3 A; 1AD6 A; 3X26 B; 2IVX A; 4ZGD B; 2JGZ B; 2CZ6 B; 2UZL B; 2ZPE B; 4AKG A; 3A8M B; 2WIP B; 1E9H B; 2C5N B; 3VYG B; 4LOC A; 5CEI B; 4F6S B; 4FX3 B; 1UNL D; 4ZGE B; 3KHI A; 1OI9 B; 2W9Z A; 2W96 A; 4EOO B; 1ENW A; 2F2C A; 1URC B; 2KR6 A; 1OKW B; 4EOI B; 1C9B A; 4TTH A; 4BCF B; 3X28 B; 1OKV B; 4EOP B; 4JX5 A; 1H1P B; 3HB9 A; 4NC6 A; 2C4G B; 4BCQ D; 3DTO A; 2W9F A; 1OL2 B; 1JOW A; 2EUF A; 2W2H A; 1H4L D; 2CZ7 B; 1E7P A; 2I53 A; 1BU2 A; 2B9R A; 3A8H B; 2QGS A; 4AKI A; 5CYI B; 2UZB B; 5ACB A; 5IF1 B; 3A8L B; 4II5 B; 1UNG D; 3VYH B; 1FVV B; 2ZPH B; 3TNH B; 2C6T B; 4CFU D; 4BCP B; 1W98 B; 4BCJ B; 1JSU B; 4EOJ B; 4BCH B; 2QQ8 A; 1GY3 B; 2CZ0 B; 4NST B; 2WMB B; 3PO3 S; 1AHJ B; 2X1N B; 4HL4 A; 1JKW A; 5ICP B; 3BLQ B; 1UGQ B; 4Y72 B; 2QFZ A; 1N4M A; 1VYW B; 2C5V B; 4BCN B; 2ZPI B; 4ELL A; 2DD5 B; 4MFE A; 1VOL A; 3DDP B; 3QYH B; 2ZPF B; 2AHJ B; 4OR5 B; 3B57 A; 4CFW B; 2BS4 A; 2ZPG B; 3G33 B; 4F7N B; 2BS2 A; 1UGS B; 3X24 B; 3F5X B; 3DDQ B; 3DJB A; 3HBL A; 3A8G B; 3EOC B; 4F7J B; 2PK9 B; 2IW6 B; 4F70 B; 4YOO A; 4BCM D; 3GTM S; 4HLQ A; 4BCG B; 4HNV A; 1FIN B; 3DOG B; 2WPA B; 4EOL B; 1JST B; 1OL1 B; 4BCK B; 3DL1 A; 2DD4 B; 5IHY A; 1H27 B; 4OB2 B; 2PMI B; 1H1R B; 1OIU B; 3TN8 B; 2CYZ B; 2W99 A; 5EFQ B; 2UUE B; 4G6L B; 1FKM A; 4OB1 B; 3VKH A; 2G77 A; 4IMY B; 2WFY B; 4ELJ A; 4CFX B; 3NDQ A; 3BLR B; 3QYE A; 4BCO B; 2UZD B; 3QHW B; 3QWL A; 3TNI B; 2CCI B; 1VIN A; 2PK2 A; 4CFV B; 1IRE B; 4M6V A; 4BBS M; 2DME A; 3BHU B; 2WJ9 A; 1AIS B; 4I3Z B; 2WIH B; 4UN0 A; #chains in the Genus database with same CATH homology 2IVX A; 3BLQ B; 2WMA B; 2JGZ B; 4EOR B; 2BPM B; 3EJ1 B; 4Y72 B; 4CFN B; 2UZL B; 1D3U B; 1N4M A; 1OGU B; 2CJM B; 4BCM B; 4CRL B; 3QHR B; 1VYW B; 2C5V B; 3POM A; 4BCN B; 4BCN D; 4EOK B; 2WIP B; 1E9H B; 2C5N B; 2QDJ A; 2IW9 B; 4ELL A; 5CEI B; 1VOL A; 3DDP B; 4F6S B; 4FX3 B; 1UNL D; 5LMK B; 4OR5 B; 5HVY B; 3BLH B; 1XO2 A; 1OI9 B; 4CFW B; 5HBE B; 5HBH B; 2W9Z A; 3G33 B; 4EC8 B; 4F7N B; 4F6W B; 2W96 A; 4UN0 A; 4BCQ B; 4EOO B; 2WEV B; 3F5X B; 3DDQ B; 4YOS A; 3EOC B; 4F7J B; 2PK9 B; 2IW6 B; 4F70 B; 1H1Q B; 4YOO A; 2F2C A; 1URC B; 2G9X B; 4BCM D; 1OKW B; 1O9K B; 2C5O B; 4EOI B; 1H24 B; 2CCH B; 5L2W B; 4BCG B; 3RGF B; 1C9B A; 1FIN B; 4TTH A; 3DOG B; 5IDN B; 4BCI B; 3O0G D; 4EOQ B; 3MY5 B; 2WPA B; 4EON B; 3M03 A; 4BCF B; 5HBJ B; 1OKV B; 4EOP B; 3TNW B; 4EOL B; 1JST B; 1OIY B; 1OL1 B; 4BCK B; 4CXA B; 1UNH D; 2C4G B; 4BCQ D; 1H27 B; 2PMI B; 4ROC A; 1ZP2 A; 1TFB A; 2W9F A; 1OL2 B; 1JOW A; 2EUF A; 2W2H A; 1H1R B; 1OIU B; 3TN8 B; 3MY1 B; 4EC9 B; 2W99 A; 1H4L D; 4F7S B; 5EFQ B; 4F7L B; 3MI9 B; 2I53 A; 5BNJ B; 2UUE B; 4G6L B; 4KRC B; 1BU2 A; 5FGK B; 4EOS B; 2B9R A; 3MIA B; 4F6U B; 2IW8 B; 4ROD A; 5CYI B; 2UZB B; 3EID B; 4IMY B; 1QMZ B; 5ACB A; 5IF1 B; 5LQF B; 3BHT B; 2BKZ B; 2R7G A; 2WXV B; 4CFM B; 1O9K A; 1GUX B; 2WFY B; 4ELJ A; 4CFX B; 5I5Z B; 3BLR B; 4II5 B; 4YOZ A; 5IDP B; 1H1S B; 1UNG D; 1FVV B; 1H28 B; 1H26 B; 4OGR B; 2C5X B; 4KRD B; 3TNH B; 2C6T B; 4ROE A; 4BCO B; 4CFU B; 2UZD B; 4YC3 B; 4CFU D; 1P5E B; 4BCP B; 1G3N C; 2WHB B; 3QHW B; 2PHG A; 4EOM B; 1W98 B; 4BCJ B; 1KXU A; 3TNI B; 1JSU B; 4EOJ B; 4BCH B; 2CCI B; 1VIN A; 2I40 B; 1GY3 B; 2PK2 A; 2UZE B; 4CFV B; 5HNB B; 1GH6 B; 5HQ0 B; 4NST B; 3H4C A; 2WMB B; 3K7A M; 3BHU B; 1AIS B; 3BHV B; 1PKD B; 3LQ5 B; 2X1N B; 4I3Z B; 1AD6 A; 1JKW A; 2WIH B; 1H25 B; 5ICP B; 1GUX A; 1F5Q B; 1H1P B; 2V22 B;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
