2PMRA

Crystal structure of a protein of unknown function from methanobacterium thermoautotrophicum
Total Genus 34
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
34
sequence length
76
structure length
76
Chain Sequence
CRERIEKDLELLEKNLMEMKSIKLSDDEEAVVERALNYRDDSVYYLEKGDHITSFGCITYAHGLLDSLRMLHRIIE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural genomics, unknown function
source organism Methanothermobacter thermautotrophicus
publication title Crystal structure of a protein of unknown function from Methanobacterium thermoautotrophicum.
rcsb
molecule keywords Uncharacterized protein
total genus 34
structure length 76
sequence length 76
ec nomenclature
pdb deposition date 2007-04-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04010 DUF357 Protein of unknown function (DUF357)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1270.90 Mainly Alpha Up-down Bundle Substrate Binding Domain Of Dnak; Chain:A; Domain 2 AF1782-like 2pmrA00
2JNKA 2OO2A 4AZIA 4FZOA 2PMRA 2OZNB 4AZCA 4AZBA 4AZCB 4FZPA 3RPMA 2YLLA 4AZGA 4AZHA 2YLAA 2YL9A 2YL6A 2YL5A 2YL8A 4AZ5A 4AZ6A 4AZ7A
chains in the Genus database with same CATH superfamily
3C7NA 2X5CA 2Z0OA 3BLBA 2ZXQA 3KDRA 4IWPA 3DX1A 4NPHA 5KBPA 1SU7A 3D51A 2F7OA 1HXKA 2RAKA 2QFFA 4JNFA 3FD9A 3T48A 3D4ZA 2MI7A 3HAHA 1TQSA 3D2EA 5E84A 4EZQA 3EJSA 4JN4A 2YIAA 3L3OM 4R5KA 3ABHA 4IM0A 1U00A 4JNEA 3BUPA 4G6QA 2PY6A 1I4LA 3RV1A 4JWCA 4D8JA 3BVXA 3OK8A 3D2FA 3CV5A 2YL8A 2GA9D 4EZVA 3CKDA 2D4CA 4EZXA 4NQIA 4UDXX 3DPPA 2QXLA 2ND1A 3L3PA 4F01A 1SUFA 2YIBA 4EZPA 1ZWWA 3LVTA 3SYVA 3QA8A 1I49A 2RAIA 1X04A 4I1QA 3RV0A 1QWNA 4IM2A 4E81A 2OBLA 3KAWA 4IM3A 3LMFA 4HYBA 3A98A 4EZTA 1I4TA 1OAOA 4R5IA 3VEAA 3SOGA 3BVWA 2EFLA 3BVUA 2YI8A 4R5GA 4AZ5A 2O0I1 2JNKA 3ACOA 3BUDA 1PS3A 3CZSA 5C5BB 3T46A 1SU8A 3DYTA 2RAJA 3DPOA 3DX4A 4IWOA 1QWUA 3I2WA 2WINM 3T4AG 3O3MB 2JNSA 2F7QA 3EJRA 4H6HA 1WDZA 4AZ7A 2X3WA 3D4YA 1E9VA 2OO2A 3DDGA 1MJGA 4BNEA 4AZIA 2QKWA 1SU6A 4EZWA 3B52X 3T49A 4JL9A 4JWDA 3D52A 3OWGA 2Z8YA 2YL9A 3D50A 3I04A 3O3OB 2Q13A 4KIKA 2Q12A 4HR1A 2F1BA 3CVRA 3DDFA 2C08A 2YKTA 2D1LA 2F18A 4JLCA 3ER8C 1E2UA 1TQTA 1TQUA 4IWQA 1URUA 2ALWA 3BUQA 4E3CA 2V0OA 1UPXA 3QNJA 1ZYLA 5C5BA 1DKYA 4ATMA 3EJPA 1JQKA 4EZOA 4AZBA 4AZCB 4WPCA 2EX3B 1E1DA 1GN9A 1X03A 2N3KA 2FICA 4M0MA 2YI9A 3KAVA 3M3WA 2RT6A 2WYIA 4FM3A 4EZUA 4KIKB 4FZOA 4HR1B 2OW7A 2X3VA 1QX1A 4FZPA 3RPMA 4NSWA 5FIGA 2EWFA 5FLEX 1TQVA 4JWEA 3DX2A 4H6IA 4UDYX 3CZNA 2KHOA 4AKVA 2NCZA 2ELBA 2OBMA 2WYHA 3ZEDA 3OHXM 3O3NB 3EJUA 2YIVX 4H8SA 2YLLA 3LLLA 2X3XA 3BUIA 1Y2OA 2YL5A 2Z0VA 2FYVA 1R5EA 3PLTA 4DCNC 1GNLA 3CAZA 2LM0A 1YWMA 1R33A 2OZNB 4EZSA 1OA1A 4AZCA 4EZRA 3F7WA 3G9GA 1GNTA 2F7RA 4HY9A 5TKYA 2YL6A 3BVTA 3BVVA 2OW6A 3ER9B 1HTYA 3QE6A 4R5JA 4EZZA 2Z0NA 3DX0A 2F1AA 2GAFD 3I39X 1OA0A 2F7PA 3QNIA 1DKXA 4AZHA 4R5LA 4WPEA 4AVMA 2ND0A 3HAIA 1R34A 2PMRA 1I4DA 3ERCC 4EZNA 1O7DC 4F00A 4AZGA 2YLAA 1O7DB 3DX3A 1LQ7A 4IW0A 3VEBA 3UITA 2EFKA 4FZSA 3QWEA 4AZ6A 3Q0KA 3T47A 2GF4A 3I01A 4EZYA 3Q84A 3EJQA 3VKHA 1HWWA 3GI7A 3DPQA 3HAJA 3B51X 4B9QA 1DKZA 4DYLA 4JWIA 2LXYA 4PO2A 1W9MA 1TQWA 3EJTA 3B53X 3BUBA
chains in the Genus database with same CATH topology
2JNKA 2OO2A 4AZIA 4FZOA 2PMRA 2OZNB 4AZCA 4AZBA 4AZCB 4FZPA 3RPMA 2YLLA 4AZGA 4AZHA 2YLAA 2YL9A 2YL6A 2YL5A 2YL8A 4AZ5A 4AZ6A 4AZ7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2JNK A;  2OO2 A;  4AZI A;  4FZO A;  2PMR A;  2OZN B;  4AZC A;  4AZB A;  4AZC B;  4FZP A;  3RPM A;  2YLL A;  4AZG A;  4AZH A;  2YLA A;  2YL9 A;  2YL6 A;  2YL5 A;  2YL8 A;  4AZ5 A;  4AZ6 A;  4AZ7 A; 
#chains in the Genus database with same CATH topology
 3C7N A;  2X5C A;  2Z0O A;  3BLB A;  2ZXQ A;  3KDR A;  4IWP A;  3DX1 A;  4NPH A;  5KBP A;  1SU7 A;  3D51 A;  2F7O A;  1HXK A;  2RAK A;  2QFF A;  4JNF A;  3FD9 A;  3T48 A;  3D4Z A;  2MI7 A;  3HAH A;  1TQS A;  3D2E A;  5E84 A;  4EZQ A;  3EJS A;  4JN4 A;  2YIA A;  3L3O M;  4R5K A;  3ABH A;  4IM0 A;  1U00 A;  4JNE A;  3BUP A;  4G6Q A;  2PY6 A;  1I4L A;  3RV1 A;  4JWC A;  4D8J A;  3BVX A;  3OK8 A;  3D2F A;  3CV5 A;  2YL8 A;  2GA9 D;  4EZV A;  3CKD A;  2D4C A;  4EZX A;  4NQI A;  4UDX X;  3DPP A;  2QXL A;  2ND1 A;  3L3P A;  4F01 A;  1SUF A;  2YIB A;  4EZP A;  1ZWW A;  3LVT A;  3SYV A;  3QA8 A;  1I49 A;  2RAI A;  1X04 A;  4I1Q A;  3RV0 A;  1QWN A;  4IM2 A;  4E81 A;  2OBL A;  3KAW A;  4IM3 A;  3LMF A;  4HYB A;  3A98 A;  4EZT A;  1I4T A;  1OAO A;  4R5I A;  3VEA A;  3SOG A;  3BVW A;  2EFL A;  3BVU A;  2YI8 A;  4R5G A;  4AZ5 A;  2O0I 1;  2JNK A;  3ACO A;  3BUD A;  1PS3 A;  3CZS A;  5C5B B;  3T46 A;  1SU8 A;  3DYT A;  2RAJ A;  3DPO A;  3DX4 A;  4IWO A;  1QWU A;  3I2W A;  2WIN M;  3T4A G;  3O3M B;  2JNS A;  2F7Q A;  3EJR A;  4H6H A;  1WDZ A;  4AZ7 A;  2X3W A;  3D4Y A;  1E9V A;  2OO2 A;  3DDG A;  1MJG A;  4BNE A;  4AZI A;  2QKW A;  1SU6 A;  4EZW A;  3B52 X;  3T49 A;  4JL9 A;  4JWD A;  3D52 A;  3OWG A;  2Z8Y A;  2YL9 A;  3D50 A;  3I04 A;  3O3O B;  2Q13 A;  4KIK A;  2Q12 A;  4HR1 A;  2F1B A;  3CVR A;  3DDF A;  2C08 A;  2YKT A;  2D1L A;  2F18 A;  4JLC A;  3ER8 C;  1E2U A;  1TQT A;  1TQU A;  4IWQ A;  1URU A;  2ALW A;  3BUQ A;  4E3C A;  2V0O A;  1UPX A;  3QNJ A;  1ZYL A;  5C5B A;  1DKY A;  4ATM A;  3EJP A;  1JQK A;  4EZO A;  4AZB A;  4AZC B;  4WPC A;  2EX3 B;  1E1D A;  1GN9 A;  1X03 A;  2N3K A;  2FIC A;  4M0M A;  2YI9 A;  3KAV A;  3M3W A;  2RT6 A;  2WYI A;  4FM3 A;  4EZU A;  4KIK B;  4FZO A;  4HR1 B;  2OW7 A;  2X3V A;  1QX1 A;  4FZP A;  3RPM A;  4NSW A;  5FIG A;  2EWF A;  5FLE X;  1TQV A;  4JWE A;  3DX2 A;  4H6I A;  4UDY X;  3CZN A;  2KHO A;  4AKV A;  2NCZ A;  2ELB A;  2OBM A;  2WYH A;  3ZED A;  3OHX M;  3O3N B;  3EJU A;  2YIV X;  4H8S A;  2YLL A;  3LLL A;  2X3X A;  3BUI A;  1Y2O A;  2YL5 A;  2Z0V A;  2FYV A;  1R5E A;  3PLT A;  4DCN C;  1GNL A;  3CAZ A;  2LM0 A;  1YWM A;  1R33 A;  2OZN B;  4EZS A;  1OA1 A;  4AZC A;  4EZR A;  3F7W A;  3G9G A;  1GNT A;  2F7R A;  4HY9 A;  5TKY A;  2YL6 A;  3BVT A;  3BVV A;  2OW6 A;  3ER9 B;  1HTY A;  3QE6 A;  4R5J A;  4EZZ A;  2Z0N A;  3DX0 A;  2F1A A;  2GAF D;  3I39 X;  1OA0 A;  2F7P A;  3QNI A;  1DKX A;  4AZH A;  4R5L A;  4WPE A;  4AVM A;  2ND0 A;  3HAI A;  1R34 A;  2PMR A;  1I4D A;  3ERC C;  4EZN A;  1O7D C;  4F00 A;  4AZG A;  2YLA A;  1O7D B;  3DX3 A;  1LQ7 A;  4IW0 A;  3VEB A;  3UIT A;  2EFK A;  4FZS A;  3QWE A;  4AZ6 A;  3Q0K A;  3T47 A;  2GF4 A;  3I01 A;  4EZY A;  3Q84 A;  3EJQ A;  3VKH A;  1HWW A;  3GI7 A;  3DPQ A;  3HAJ A;  3B51 X;  4B9Q A;  1DKZ A;  4DYL A;  4JWI A;  2LXY A;  4PO2 A;  1W9M A;  1TQW A;  3EJT A;  3B53 X;  3BUB A; 
#chains in the Genus database with same CATH homology
 2JNK A;  2OO2 A;  4AZI A;  4FZO A;  2PMR A;  2OZN B;  4AZC A;  4AZB A;  4AZC B;  4FZP A;  3RPM A;  2YLL A;  4AZG A;  4AZH A;  2YLA A;  2YL9 A;  2YL6 A;  2YL5 A;  2YL8 A;  4AZ5 A;  4AZ6 A;  4AZ7 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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