2PMR | Genus

Total Genus 34

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	34
sequence length	76
structure length	76
Chain Sequence	CRERIEKDLELLEKNLMEMKSIKLSDDEEAVVERALNYRDDSVYYLEKGDHITSFGCITYAHGLLDSLRMLHRIIE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Structural genomics, unknown function
source organism	Methanothermobacter thermautotrophicus
publication title	Crystal structure of a protein of unknown function from Methanobacterium thermoautotrophicum. rcsb
molecule keywords	Uncharacterized protein
total genus	34
structure length	76
sequence length	76
ec nomenclature
pdb deposition date	2007-04-23

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF04010	DUF357	Protein of unknown function (DUF357)

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.20.1270.90	Mainly Alpha	Up-down Bundle	Substrate Binding Domain Of Dnak; Chain:A; Domain 2	AF1782-like	2pmrA00

2YL8A 4AZHA 4AZCB 2YL5A 3RPMA 2YLAA 4AZ7A 4AZIA 4AZBA 4FZPA 4AZGA 2OZNB 4AZCA 2JNKA 2PMRA 2YL9A 2OO2A 4AZ5A 2YLLA 4AZ6A 2YL6A 4FZOA
chains in the Genus database with same CATH superfamily

1O7DC 4AZCB 2Z0VA 4AZGA 2ND1A 3RV0A 1JQKA 2Z8YA 2ND0A 1PS3A 2EFKA 3D4ZA 1SU6A 3DDFA 3LLLA 4KIKB 3I04A 4JNFA 3DPQA 4AZCA 3M3WA 3DYTA 2RAJA 4IWOA 2GAFD 1GNTA 2RAIA 1I4TA 2EX3B 2N3KA 2EFLA 1DKXA 3O3OB 5KBPA 2QFFA 2X3WA 1SU8A 2OZNB 4KIKA 3OHXM 2YI8A 3EJUA 4IM2A 1MJGA 4EZWA 5FIGA 1X03A 3D4YA 2F1AA 1X04A 2F1BA 2YL8A 2YL5A 4EZPA 2GA9D 3BUPA 1I4DA 3BVVA 3VEAA 1W9MA 4IWPA 4AVMA 1R5EA 2OO2A 4R5JA 3DX4A 2ALWA 3HAHA 3T46A 3CZSA 4IW0A 2WINM 3BUQA 3KDRA 3OK8A 2YI9A 3LVTA 3DX3A 2F7OA 2F7QA 4BNEA 4WPEA 4EZSA 1DKZA 3CKDA 4AZ6A 4UDYX 4EZOA 3B53X 4B9QA 2D1LA 3D2FA 2X3VA 3RPMA 1R34A 3EJSA 3LMFA 1I4LA 4EZTA 2F7RA 4E3CA 3SYVA 1E1DA 1YWMA 2YL6A 3DX0A 4JLCA 3EJRA 3ACOA 4JWDA 3I39X 3PLTA 2X3XA 2Z0NA 2RT6A 4AZ5A 3SOGA 1U00A 4G6QA 3DDGA 2F18A 4FZOA 3BUBA 4AKVA 5TKYA 4EZXA 2V0OA 3EJTA 4ATMA 3BUIA 3ER9B 1DKYA 2WYHA 3D52A 4F00A 4EZQA 4UDXX 1GNLA 4EZYA 4HR1B 1TQTA 3VEBA 3CV5A 1GN9A 1OAOA 3CVRA 3L3PA 4NSWA 2JNSA 2PY6A 3O3NB 3G9GA 2LM0A 2FICA 4NPHA 1ZWWA 2D4CA 2NCZA 3A98A 2YLAA 2OW7A 4FZPA 1WDZA 4R5KA 3CAZA 3T4AG 1LQ7A 2OBLA 3CZNA 3EJPA 4WPCA 2YIAA 2YIBA 3T47A 4HR1A 2OW6A 1TQVA 2YKTA 3T48A 3HAJA 2Q12A 4R5GA 3B52X 2YIVX 3BVWA 1TQSA 3QE6A 3BUDA 3Q84A 1ZYLA 2YLLA 3ER8C 4EZNA 3KAWA 1OA1A 3EJQA 4AZHA 3DX2A 4DYLA 1SU7A 4AZ7A 4AZBA 4JWIA 2C08A 3D51A 1QWNA 3QNIA 4FZSA 4EZVA 2WYIA 3DPPA 2RAKA 2QKWA 3DPOA 3QNJA 3GI7A 1O7DB 2PMRA 1E2UA 4NQIA 2Q13A 1QX1A 2FYVA 3RV1A 3ERCC 4JN4A 5C5BA 2OBMA 1TQUA 2ELBA 2X5CA 4HY9A 3DX1A 3T49A 4IWQA 1E9VA 3KAVA 3OWGA 4JL9A 4EZRA 3BVTA 2LXYA 2GF4A 1HTYA 3FD9A 3UITA 4R5IA 2EWFA 2JNKA 3I2WA 2O0I1 4IM3A 3D50A 4D8JA 3L3OM 1Y2OA 4IM0A 1QWUA 3ABHA 4H6IA 3B51X 1HWWA 3I01A 2QXLA 4JNEA 4F01A 4FM3A 1HXKA 2MI7A 4DCNC 2ZXQA 4I1QA 1OA0A 4AZIA 3F7WA 2YL9A 4EZUA 4EZZA 4JWCA 4HYBA 3ZEDA 3D2EA 3Q0KA 3BVUA 3BVXA 1TQWA 3QWEA 5E84A 5FLEX 4R5LA 3HAIA 2Z0OA 1UPXA 2F7PA 4E81A 4JWEA 1R33A 3O3MB 4PO2A 3VKHA 4H8SA 3BLBA 2KHOA 1SUFA 5C5BB 4M0MA 4H6HA 1URUA 3C7NA 1I49A 3QA8A
chains in the Genus database with same CATH topology

2YL8A 4AZHA 4AZCB 2YL5A 3RPMA 2YLAA 4AZ7A 4AZIA 4AZBA 4FZPA 4AZGA 2OZNB 4AZCA 2JNKA 2PMRA 2YL9A 2OO2A 4AZ5A 2YLLA 4AZ6A 2YL6A 4FZOA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 2YL8 A;  4AZH A;  4AZC B;  2YL5 A;  3RPM A;  2YLA A;  4AZ7 A;  4AZI A;  4AZB A;  4FZP A;  4AZG A;  2OZN B;  4AZC A;  2JNK A;  2PMR A;  2YL9 A;  2OO2 A;  4AZ5 A;  2YLL A;  4AZ6 A;  2YL6 A;  4FZO A; 
#chains in the Genus database with same CATH topology
 1O7D C;  4AZC B;  2Z0V A;  4AZG A;  2ND1 A;  3RV0 A;  1JQK A;  2Z8Y A;  2ND0 A;  1PS3 A;  2EFK A;  3D4Z A;  1SU6 A;  3DDF A;  3LLL A;  4KIK B;  3I04 A;  4JNF A;  3DPQ A;  4AZC A;  3M3W A;  3DYT A;  2RAJ A;  4IWO A;  2GAF D;  1GNT A;  2RAI A;  1I4T A;  2EX3 B;  2N3K A;  2EFL A;  1DKX A;  3O3O B;  5KBP A;  2QFF A;  2X3W A;  1SU8 A;  2OZN B;  4KIK A;  3OHX M;  2YI8 A;  3EJU A;  4IM2 A;  1MJG A;  4EZW A;  5FIG A;  1X03 A;  3D4Y A;  2F1A A;  1X04 A;  2F1B A;  2YL8 A;  2YL5 A;  4EZP A;  2GA9 D;  3BUP A;  1I4D A;  3BVV A;  3VEA A;  1W9M A;  4IWP A;  4AVM A;  1R5E A;  2OO2 A;  4R5J A;  3DX4 A;  2ALW A;  3HAH A;  3T46 A;  3CZS A;  4IW0 A;  2WIN M;  3BUQ A;  3KDR A;  3OK8 A;  2YI9 A;  3LVT A;  3DX3 A;  2F7O A;  2F7Q A;  4BNE A;  4WPE A;  4EZS A;  1DKZ A;  3CKD A;  4AZ6 A;  4UDY X;  4EZO A;  3B53 X;  4B9Q A;  2D1L A;  3D2F A;  2X3V A;  3RPM A;  1R34 A;  3EJS A;  3LMF A;  1I4L A;  4EZT A;  2F7R A;  4E3C A;  3SYV A;  1E1D A;  1YWM A;  2YL6 A;  3DX0 A;  4JLC A;  3EJR A;  3ACO A;  4JWD A;  3I39 X;  3PLT A;  2X3X A;  2Z0N A;  2RT6 A;  4AZ5 A;  3SOG A;  1U00 A;  4G6Q A;  3DDG A;  2F18 A;  4FZO A;  3BUB A;  4AKV A;  5TKY A;  4EZX A;  2V0O A;  3EJT A;  4ATM A;  3BUI A;  3ER9 B;  1DKY A;  2WYH A;  3D52 A;  4F00 A;  4EZQ A;  4UDX X;  1GNL A;  4EZY A;  4HR1 B;  1TQT A;  3VEB A;  3CV5 A;  1GN9 A;  1OAO A;  3CVR A;  3L3P A;  4NSW A;  2JNS A;  2PY6 A;  3O3N B;  3G9G A;  2LM0 A;  2FIC A;  4NPH A;  1ZWW A;  2D4C A;  2NCZ A;  3A98 A;  2YLA A;  2OW7 A;  4FZP A;  1WDZ A;  4R5K A;  3CAZ A;  3T4A G;  1LQ7 A;  2OBL A;  3CZN A;  3EJP A;  4WPC A;  2YIA A;  2YIB A;  3T47 A;  4HR1 A;  2OW6 A;  1TQV A;  2YKT A;  3T48 A;  3HAJ A;  2Q12 A;  4R5G A;  3B52 X;  2YIV X;  3BVW A;  1TQS A;  3QE6 A;  3BUD A;  3Q84 A;  1ZYL A;  2YLL A;  3ER8 C;  4EZN A;  3KAW A;  1OA1 A;  3EJQ A;  4AZH A;  3DX2 A;  4DYL A;  1SU7 A;  4AZ7 A;  4AZB A;  4JWI A;  2C08 A;  3D51 A;  1QWN A;  3QNI A;  4FZS A;  4EZV A;  2WYI A;  3DPP A;  2RAK A;  2QKW A;  3DPO A;  3QNJ A;  3GI7 A;  1O7D B;  2PMR A;  1E2U A;  4NQI A;  2Q13 A;  1QX1 A;  2FYV A;  3RV1 A;  3ERC C;  4JN4 A;  5C5B A;  2OBM A;  1TQU A;  2ELB A;  2X5C A;  4HY9 A;  3DX1 A;  3T49 A;  4IWQ A;  1E9V A;  3KAV A;  3OWG A;  4JL9 A;  4EZR A;  3BVT A;  2LXY A;  2GF4 A;  1HTY A;  3FD9 A;  3UIT A;  4R5I A;  2EWF A;  2JNK A;  3I2W A;  2O0I 1;  4IM3 A;  3D50 A;  4D8J A;  3L3O M;  1Y2O A;  4IM0 A;  1QWU A;  3ABH A;  4H6I A;  3B51 X;  1HWW A;  3I01 A;  2QXL A;  4JNE A;  4F01 A;  4FM3 A;  1HXK A;  2MI7 A;  4DCN C;  2ZXQ A;  4I1Q A;  1OA0 A;  4AZI A;  3F7W A;  2YL9 A;  4EZU A;  4EZZ A;  4JWC A;  4HYB A;  3ZED A;  3D2E A;  3Q0K A;  3BVU A;  3BVX A;  1TQW A;  3QWE A;  5E84 A;  5FLE X;  4R5L A;  3HAI A;  2Z0O A;  1UPX A;  2F7P A;  4E81 A;  4JWE A;  1R33 A;  3O3M B;  4PO2 A;  3VKH A;  4H8S A;  3BLB A;  2KHO A;  1SUF A;  5C5B B;  4M0M A;  4H6H A;  1URU A;  3C7N A;  1I49 A;  3QA8 A; 
#chains in the Genus database with same CATH homology
 2YL8 A;  4AZH A;  4AZC B;  2YL5 A;  3RPM A;  2YLA A;  4AZ7 A;  4AZI A;  4AZB A;  4FZP A;  4AZG A;  2OZN B;  4AZC A;  2JNK A;  2PMR A;  2YL9 A;  2OO2 A;  4AZ5 A;  2YLL A;  4AZ6 A;  2YL6 A;  4FZO A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2PMRA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations