The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
99
|
sequence length |
247
|
structure length |
242
|
Chain Sequence |
LEDSPQTRSLLGVFEEDATAISNYMNQLYQAMHRIYDAQNELSAATHLTSKLLKEYEKQRFPEVMSSTLQQFSKVIDELSSCHAVLSTQLADAMMFPITQFKERDLKEILTLKEVFQIASNDHDAAINRYSRLSKKRENDKVKYEVTEDVYTSRKKQHQTMMHYFCALNTLQYKKKIALLEPLLGYMQAQISFFKMGSENLNEQLEEFLANIGTSVQNVRREMDSDIETMQQTIEDLEVASD
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Structure of the APPL1 BAR-PH domain and characterization of its interaction with Rab5.
pubmed doi rcsb |
| molecule tags |
Protein transport
|
| source organism |
Homo sapiens
|
| molecule keywords |
DCC-interacting protein 13 alpha
|
| total genus |
99
|
| structure length |
242
|
| sequence length |
247
|
| ec nomenclature | |
| pdb deposition date | 2007-05-23 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF16746 | BAR_3 | BAR domain of APPL family |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Up-down Bundle | Substrate Binding Domain Of Dnak; Chain:A; Domain 2 | Arfaptin homology (AH) domain/BAR domain |
#chains in the Genus database with same CATH superfamily 1ZWW A; 2Z0N A; 3G9G A; 4DCN C; 3HAJ A; 4AKV A; 1X03 A; 3I2W A; 3Q0K A; 1I4D A; 2EFL A; 3LLL A; 3QE6 A; 3PLT A; 1Y2O A; 4FZS A; 3OK8 A; 4NQI A; 4ATM A; 3ABH A; 4NSW A; 3QNI A; 2D1L A; 4WPE A; 2FIC A; 2X3V A; 4I1Q A; 3SYV A; 2D4C A; 4BNE A; 2Q12 A; 2Z0V A; 4AVM A; 1URU A; 3Q84 A; 2X3W A; 1WDZ A; 2X3X A; 2EFK A; 5C5B A; 2RAJ A; 2YKT A; 3ACO A; 3DYT A; 3M3W A; 2Q13 A; 1I4T A; 2RAI A; 3HAI A; 5C5B B; 3CAZ A; 2RAK A; 4WPC A; 4DYL A; 1I4L A; 1I49 A; 2ELB A; 3QWE A; 2V0O A; 2C08 A; 4H8S A; 3SOG A; 2Z0O A; 1X04 A; 3HAH A; #chains in the Genus database with same CATH topology 4EZT A; 3DPP A; 3T4A G; 4AZC B; 4JL9 A; 3FD9 A; 4AVM A; 1OA0 A; 1W9M A; 2RAK A; 4H6H A; 3BVT A; 3HAJ A; 5FLE X; 3BUI A; 3I39 X; 4EZW A; 4ATM A; 1TQW A; 3GI7 A; 2OW6 A; 2F7R A; 2YL8 A; 3D50 A; 2ND0 A; 4EZQ A; 4HYB A; 5C5B B; 1QWU A; 3RV1 A; 3DX0 A; 3QWE A; 3QNI A; 2ZXQ A; 3D2E A; 3QE6 A; 3PLT A; 3BUQ A; 3ABH A; 4AZ7 A; 3EJS A; 3CV5 A; 2YIA A; 3ER9 B; 1JQK A; 3M3W A; 4DYL A; 1HXK A; 1R33 A; 1SUF A; 4UDX X; 1DKY A; 4M0M A; 3DX2 A; 3EJU A; 4JWE A; 2YLA A; 2PY6 A; 1GNL A; 1E9V A; 3D51 A; 4EZX A; 1TQU A; 4JNE A; 1R34 A; 3BVX A; 2YL6 A; 3DX4 A; 3Q0K A; 4JWC A; 3CZS A; 4D8J A; 2D1L A; 2Q12 A; 1DKZ A; 3OWG A; 1TQS A; 2F1B A; 3CAZ A; 1I4L A; 1I49 A; 3DDG A; 1ZWW A; 3EJT A; 3B53 X; 3G9G A; 3D4Y A; 2F1A A; 4IM3 A; 3D52 A; 4F01 A; 1OA1 A; 3KAV A; 1Y2O A; 2YL9 A; 4EZO A; 3I01 A; 4AZG A; 3B52 X; 1E2U A; 1GNT A; 2X3W A; 3CKD A; 3BUD A; 3ZED A; 4EZP A; 2OBM A; 2EFK A; 1U00 A; 2YIB A; 2N3K A; 3B51 X; 1UPX A; 2LXY A; 1SU7 A; 3DPO A; 2KHO A; 4IW0 A; 1ZYL A; 3VEB A; 2OBL A; 2X3V A; 4BNE A; 2WIN M; 3VEA A; 2X3X A; 4R5L A; 4R5K A; 3OHX M; 2Z8Y A; 2WYI A; 4E3C A; 3BLB A; 1QX1 A; 4UDY X; 2QFF A; 2JNS A; 3OK8 A; 4EZU A; 3T47 A; 3ERC C; 3SYV A; 1QWN A; 3Q84 A; 1R5E A; 1WDZ A; 4FZP A; 1HTY A; 3HAI A; 4EZY A; 4JNF A; 3BVU A; 2Z0O A; 5FIG A; 3HAH A; 2F7O A; 3LVT A; 4JWI A; 4R5I A; 2O0I 1; 1GN9 A; 4IWQ A; 3EJP A; 4NPH A; 4R5J A; 3RPM A; 4EZV A; 3D2F A; 3O3O B; 2LM0 A; 2NCZ A; 2ALW A; 2F18 A; 3I04 A; 2EFL A; 3LLL A; 4AZB A; 3CVR A; 4FZS A; 4G6Q A; 4WPE A; 3BVW A; 1PS3 A; 4B9Q A; 1O7D B; 3L3P A; 2RAI A; 4HR1 A; 3CZN A; 4H6I A; 4EZS A; 2OW7 A; 1YWM A; 3LMF A; 1X03 A; 5TKY A; 2FIC A; 1URU A; 3ACO A; 3C7N A; 1I4T A; 3T48 A; 4IWO A; 3EJQ A; 2GF4 A; 4HY9 A; 1HWW A; 2YIV X; 2Z0N A; 4AZI A; 4IWP A; 4AZH A; 4EZZ A; 4FM3 A; 1MJG A; 4NSW A; 4JWD A; 2YI8 A; 2JNK A; 4EZR A; 3DDF A; 4PO2 A; 2QXL A; 2MI7 A; 4AZ5 A; 3VKH A; 2C08 A; 1OAO A; 2GAF D; 2YI9 A; 1E1D A; 4JLC A; 1LQ7 A; 3T49 A; 3O3M B; 2YL5 A; 4R5G A; 4KIK B; 4FZO A; 4EZN A; 3F7W A; 2Q13 A; 4JN4 A; 3KDR A; 4WPC A; 3ER8 C; 4H8S A; 4HR1 B; 2OZN B; 3EJR A; 1O7D C; 4AZC A; 4AKV A; 3I2W A; 2EX3 B; 5E84 A; 3DX1 A; 1SU8 A; 2X5C A; 2F7P A; 1TQV A; 1DKX A; 3T46 A; 2GA9 D; 2EWF A; 2V0O A; 2FYV A; 4E81 A; 3SOG A; 1SU6 A; 4DCN C; 2PMR A; 1I4D A; 3DPQ A; 4NQI A; 3QNJ A; 3A98 A; 4KIK A; 4I1Q A; 2D4C A; 2ND1 A; 2QKW A; 3BUP A; 5C5B A; 2RAJ A; 2OO2 A; 2YKT A; 3O3N B; 3DYT A; 1TQT A; 3BUB A; 3QA8 A; 3KAW A; 2YLL A; 1X04 A; 2F7Q A; 3RV0 A; 2RT6 A; 4AZ6 A; 4F00 A; 2WYH A; 3UIT A; 4IM0 A; 5KBP A; 2Z0V A; 3DX3 A; 3D4Z A; 3L3O M; 3BVV A; 2ELB A; 4IM2 A; #chains in the Genus database with same CATH homology 1ZWW A; 2Z0N A; 3G9G A; 4DCN C; 3HAJ A; 4AKV A; 1X03 A; 3I2W A; 3Q0K A; 1I4D A; 2EFL A; 3LLL A; 3QE6 A; 3PLT A; 1Y2O A; 4FZS A; 3OK8 A; 4NQI A; 4ATM A; 3ABH A; 4NSW A; 3QNI A; 2D1L A; 4WPE A; 2FIC A; 2X3V A; 4I1Q A; 3SYV A; 2D4C A; 4BNE A; 2Q12 A; 2Z0V A; 4AVM A; 1URU A; 3Q84 A; 2X3W A; 1WDZ A; 2X3X A; 2EFK A; 5C5B A; 2RAJ A; 2YKT A; 3ACO A; 3DYT A; 3M3W A; 2Q13 A; 1I4T A; 2RAI A; 3HAI A; 5C5B B; 3CAZ A; 2RAK A; 4WPC A; 4DYL A; 1I4L A; 1I49 A; 2ELB A; 3QWE A; 2V0O A; 2C08 A; 4H8S A; 3SOG A; 2Z0O A; 1X04 A; 3HAH A;
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