2QKWA

Structural basis for activation of plant immunity by bacterial effector protein avrpto
Total Genus 36
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
36
sequence length
101
structure length
101
Chain Sequence
DNVTSSQLLSVRHQLAESAGLPRDQHEFVSSQAPQSLRNRYNNLYSHTQRTLDMADMQHRYMTGASGINPGMLPHENVDDMRSAITDWSDMREALQHAMGI
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
Updating...
connected with : NaN
publication title The structural basis for activation of plant immunity by bacterial effector protein AvrPto
pubmed doi rcsb
molecule tags Transferase
source organism Pseudomonas syringae
molecule keywords Avirulence protein
total genus 36
structure length 101
sequence length 101
ec nomenclature
pdb deposition date 2007-07-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF11592 AvrPto Central core of the bacterial effector protein AvrPto
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1270.140 Mainly Alpha Up-down Bundle Substrate Binding Domain Of Dnak; Chain:A; Domain 2 AvrPto 2qkwA00
2QKWA 1R5EA
chains in the Genus database with same CATH superfamily
3ERCC 2D4CA 3Q84A 4EZSA 1SU7A 2C08A 3D51A 3L3PA 4IM3A 3ER9B 3QA8A 3OK8A 3RV1A 2RT6A 4EZTA 2OW6A 4JN4A 2QKWA 1HTYA 1URUA 1GNTA 2OO2A 3DX2A 2YLAA 4E81A 1DKZA 4UDYX 4AVMA 3D2FA 3CZSA 1E2UA 3O3NB 3CKDA 3RV0A 2LXYA 3QNIA 2RAIA 2F7PA 3T47A 3Q0KA 4AZCB 4AZ5A 1TQVA 2GA9D 3KDRA 4R5IA 3M3WA 1R33A 4HYBA 3DX1A 4FZSA 2Q12A 3DX4A 4F01A 4KIKB 3B53X 2Z0NA 3BLBA 3LLLA 3BVTA 2KHOA 2WYIA 1TQWA 2F7RA 1I4TA 3BUBA 3C7NA 4BNEA 3T46A 3KAVA 2N3KA 1TQUA 3BUPA 4FZPA 4R5LA 4EZQA 2X5CA 3EJPA 2FICA 2NCZA 1Y2OA 1MJGA 4FM3A 3ER8C 4AZBA 1TQTA 2GF4A 4F00A 2WYHA 2Z0VA 3UITA 2RAJA 5E84A 3BUQA 4HR1A 1UPXA 3EJSA 4EZXA 4H8SA 4ATMA 5C5BB 3QE6A 1TQSA 4IM2A 1R34A 2ND0A 4WPCA 4AKVA 3O3OB 3BUDA 2OW7A 2ZXQA 3OWGA 4JWEA 2YI8A 2QFFA 1SU8A 2D1LA 4EZPA 2EWFA 2Q13A 1O7DB 4PO2A 4IWPA 2F1AA 1QX1A 3ZEDA 4AZIA 3G9GA 1ZYLA 3FD9A 4JWIA 4H6HA 2YIVX 1PS3A 1E1DA 4NQIA 2YL5A 3BVXA 2YL9A 1QWNA 3EJQA 1GN9A 1HWWA 3DX0A 1SUFA 2EX3B 4JNFA 2PMRA 1U00A 4EZNA 3KAWA 3PLTA 3SOGA 3LMFA 3HAJA 2F7QA 2YI9A 1GNLA 2YLLA 3T49A 4E3CA 1OA1A 4R5JA 3VEAA 4AZGA 2X3XA 3B52X 4FZOA 2O0I1 2ND1A 2YIAA 2F18A 3DPOA 3EJUA 4IM0A 2Z0OA 3DPPA 1SU6A 4JL9A 3CV5A 2Z8YA 3I01A 3D50A 2ALWA 4R5KA 4JNEA 3SYVA 1DKXA 3DDFA 4IW0A 3D4ZA 3I39X 1I4DA 4NPHA 2YIBA 2F7OA 4EZUA 1W9MA 2EFKA 3D52A 3OHXM 3DYTA 2MI7A 3DX3A 2OBMA 2V0OA 3CAZA 2EFLA 3D2EA 4NSWA 1OAOA 4JWDA 4IWOA 3D4YA 1ZWWA 2GAFD 3ABHA 3B51X 1OA0A 1QWUA 2F1BA 4IWQA 3O3MB 4UDXX 1LQ7A 1I4LA 2X3VA 4AZCA 4EZYA 2FYVA 4R5GA 3ACOA 2RAKA 3BUIA 2YKTA 4HR1B 3T4AG 1X03A 1E9VA 3T48A 4KIKA 3GI7A 1WDZA 4EZOA 4WPEA 3EJTA 1YWMA 3F7WA 4JWCA 4EZRA 3BVWA 2YL8A 3L3OM 4D8JA 1O7DC 2YL6A 3CVRA 4G6QA 4I1QA 1HXKA 4M0MA 3LVTA 4HY9A 3DDGA 2LM0A 4AZ7A 3RPMA 3HAHA 5TKYA 3CZNA 1DKYA 4EZWA 4AZ6A 4B9QA 2OBLA 3EJRA 5C5BA 3I2WA 2JNKA 3QWEA 2JNSA 2OZNB 1I49A 2PY6A 4DYLA 4DCNC 3A98A 3BVUA 5FIGA 5KBPA 3VKHA 3BVVA 2ELBA 4EZVA 4JLCA 3HAIA 3DPQA 4AZHA 2QXLA 1R5EA 4EZZA 5FLEX 4H6IA 1X04A 2WINM 3VEBA 1JQKA 2X3WA 3QNJA 3I04A
chains in the Genus database with same CATH topology
2QKWA 1R5EA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2QKW A;  1R5E A; 
#chains in the Genus database with same CATH topology
 3ERC C;  2D4C A;  3Q84 A;  4EZS A;  1SU7 A;  2C08 A;  3D51 A;  3L3P A;  4IM3 A;  3ER9 B;  3QA8 A;  3OK8 A;  3RV1 A;  2RT6 A;  4EZT A;  2OW6 A;  4JN4 A;  2QKW A;  1HTY A;  1URU A;  1GNT A;  2OO2 A;  3DX2 A;  2YLA A;  4E81 A;  1DKZ A;  4UDY X;  4AVM A;  3D2F A;  3CZS A;  1E2U A;  3O3N B;  3CKD A;  3RV0 A;  2LXY A;  3QNI A;  2RAI A;  2F7P A;  3T47 A;  3Q0K A;  4AZC B;  4AZ5 A;  1TQV A;  2GA9 D;  3KDR A;  4R5I A;  3M3W A;  1R33 A;  4HYB A;  3DX1 A;  4FZS A;  2Q12 A;  3DX4 A;  4F01 A;  4KIK B;  3B53 X;  2Z0N A;  3BLB A;  3LLL A;  3BVT A;  2KHO A;  2WYI A;  1TQW A;  2F7R A;  1I4T A;  3BUB A;  3C7N A;  4BNE A;  3T46 A;  3KAV A;  2N3K A;  1TQU A;  3BUP A;  4FZP A;  4R5L A;  4EZQ A;  2X5C A;  3EJP A;  2FIC A;  2NCZ A;  1Y2O A;  1MJG A;  4FM3 A;  3ER8 C;  4AZB A;  1TQT A;  2GF4 A;  4F00 A;  2WYH A;  2Z0V A;  3UIT A;  2RAJ A;  5E84 A;  3BUQ A;  4HR1 A;  1UPX A;  3EJS A;  4EZX A;  4H8S A;  4ATM A;  5C5B B;  3QE6 A;  1TQS A;  4IM2 A;  1R34 A;  2ND0 A;  4WPC A;  4AKV A;  3O3O B;  3BUD A;  2OW7 A;  2ZXQ A;  3OWG A;  4JWE A;  2YI8 A;  2QFF A;  1SU8 A;  2D1L A;  4EZP A;  2EWF A;  2Q13 A;  1O7D B;  4PO2 A;  4IWP A;  2F1A A;  1QX1 A;  3ZED A;  4AZI A;  3G9G A;  1ZYL A;  3FD9 A;  4JWI A;  4H6H A;  2YIV X;  1PS3 A;  1E1D A;  4NQI A;  2YL5 A;  3BVX A;  2YL9 A;  1QWN A;  3EJQ A;  1GN9 A;  1HWW A;  3DX0 A;  1SUF A;  2EX3 B;  4JNF A;  2PMR A;  1U00 A;  4EZN A;  3KAW A;  3PLT A;  3SOG A;  3LMF A;  3HAJ A;  2F7Q A;  2YI9 A;  1GNL A;  2YLL A;  3T49 A;  4E3C A;  1OA1 A;  4R5J A;  3VEA A;  4AZG A;  2X3X A;  3B52 X;  4FZO A;  2O0I 1;  2ND1 A;  2YIA A;  2F18 A;  3DPO A;  3EJU A;  4IM0 A;  2Z0O A;  3DPP A;  1SU6 A;  4JL9 A;  3CV5 A;  2Z8Y A;  3I01 A;  3D50 A;  2ALW A;  4R5K A;  4JNE A;  3SYV A;  1DKX A;  3DDF A;  4IW0 A;  3D4Z A;  3I39 X;  1I4D A;  4NPH A;  2YIB A;  2F7O A;  4EZU A;  1W9M A;  2EFK A;  3D52 A;  3OHX M;  3DYT A;  2MI7 A;  3DX3 A;  2OBM A;  2V0O A;  3CAZ A;  2EFL A;  3D2E A;  4NSW A;  1OAO A;  4JWD A;  4IWO A;  3D4Y A;  1ZWW A;  2GAF D;  3ABH A;  3B51 X;  1OA0 A;  1QWU A;  2F1B A;  4IWQ A;  3O3M B;  4UDX X;  1LQ7 A;  1I4L A;  2X3V A;  4AZC A;  4EZY A;  2FYV A;  4R5G A;  3ACO A;  2RAK A;  3BUI A;  2YKT A;  4HR1 B;  3T4A G;  1X03 A;  1E9V A;  3T48 A;  4KIK A;  3GI7 A;  1WDZ A;  4EZO A;  4WPE A;  3EJT A;  1YWM A;  3F7W A;  4JWC A;  4EZR A;  3BVW A;  2YL8 A;  3L3O M;  4D8J A;  1O7D C;  2YL6 A;  3CVR A;  4G6Q A;  4I1Q A;  1HXK A;  4M0M A;  3LVT A;  4HY9 A;  3DDG A;  2LM0 A;  4AZ7 A;  3RPM A;  3HAH A;  5TKY A;  3CZN A;  1DKY A;  4EZW A;  4AZ6 A;  4B9Q A;  2OBL A;  3EJR A;  5C5B A;  3I2W A;  2JNK A;  3QWE A;  2JNS A;  2OZN B;  1I49 A;  2PY6 A;  4DYL A;  4DCN C;  3A98 A;  3BVU A;  5FIG A;  5KBP A;  3VKH A;  3BVV A;  2ELB A;  4EZV A;  4JLC A;  3HAI A;  3DPQ A;  4AZH A;  2QXL A;  1R5E A;  4EZZ A;  5FLE X;  4H6I A;  1X04 A;  2WIN M;  3VEB A;  1JQK A;  2X3W A;  3QNJ A;  3I04 A; 
#chains in the Genus database with same CATH homology
 2QKW A;  1R5E A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

Application loaded.