2QKW | Genus

Total Genus 36

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	36
sequence length	101
structure length	101
Chain Sequence	DNVTSSQLLSVRHQLAESAGLPRDQHEFVSSQAPQSLRNRYNNLYSHTQRTLDMADMQHRYMTGASGINPGMLPHENVDDMRSAITDWSDMREALQHAMGI

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Transferase
source organism	Pseudomonas syringae
publication title	The structural basis for activation of plant immunity by bacterial effector protein AvrPto pubmed doi rcsb
molecule keywords	Avirulence protein
total genus	36
structure length	101
sequence length	101
ec nomenclature
pdb deposition date	2007-07-11

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF11592	AvrPto	Central core of the bacterial effector protein AvrPto

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.20.1270.140	Mainly Alpha	Up-down Bundle	Substrate Binding Domain Of Dnak; Chain:A; Domain 2	AvrPto	2qkwA00

2QKWA 1R5EA
chains in the Genus database with same CATH superfamily

4JN4A 3RV1A 4R5LA 4IWPA 4UDYX 4AZHA 4EZSA 2RAKA 2F1BA 3D2FA 4EZUA 4JNEA 3D4YA 3HAHA 1X04A 2YLAA 4WPCA 2V0OA 4FZSA 2RAJA 3FD9A 1HWWA 1GNTA 2PMRA 3ZEDA 2YKTA 1R33A 2YIBA 4JWEA 2Z0OA 3OWGA 3T4AG 3EJUA 2RAIA 3BLBA 1W9MA 4FM3A 3D4ZA 4JNFA 4IWQA 2OZNB 3D50A 4DYLA 1WDZA 4JL9A 3KDRA 4B9QA 3EJSA 2MI7A 4ATMA 2C08A 2ELBA 2JNKA 2F1AA 1ZYLA 3LLLA 1OA1A 2YL8A 4AZCB 3LVTA 3HAIA 3OK8A 1SU7A 2X5CA 3DX3A 4NSWA 4WPEA 4JLCA 4IM3A 3M3WA 1TQSA 4UDXX 3UITA 2D4CA 3RPMA 2OBMA 3DX2A 2D1LA 4FZPA 2YL5A 3EJPA 1I4TA 1R5EA 1QX1A 2Q13A 3OHXM 4R5IA 2YLLA 2YL9A 2YI8A 3KAVA 1QWUA 3BVTA 1JQKA 1R34A 3DYTA 1GNLA 3Q0KA 3GI7A 2JNSA 4EZVA 3LMFA 4AZ7A 3ERCC 3CKDA 1HXKA 3T48A 4AZBA 3ER8C 3EJRA 1I4DA 4H6HA 1X03A 3DDFA 1DKZA 3CAZA 2ZXQA 3CZSA 3PLTA 3BUDA 4E3CA 4D8JA 3I39X 1LQ7A 4EZNA 2KHOA 3C7NA 2GA9D 3O3MB 2YI9A 4EZQA 2Z0VA 3QE6A 2Z8YA 4AZIA 2FICA 4EZOA 1O7DC 2F7OA 2YIAA 3Q84A 3D2EA 3BVUA 5E84A 4NQIA 1E9VA 2WYHA 4BNEA 3BVWA 3A98A 1OAOA 4AZCA 1PS3A 1TQUA 1U00A 4EZPA 3CVRA 2QXLA 3I01A 4HR1B 3EJQA 3EJTA 4EZWA 5C5BB 4AZ6A 3ACOA 1OA0A 2X3XA 3SYVA 2RT6A 4PO2A 4I1QA 2OW7A 2N3KA 2OBLA 2PY6A 2EFLA 2X3VA 3D51A 1QWNA 4EZRA 2F7RA 2LXYA 1DKXA 4R5KA 4F01A 3T46A 3DX0A 1SU8A 1O7DB 2NCZA 1SUFA 5TKYA 4IWOA 2O0I1 3F7WA 3B52X 4R5JA 2YL6A 2EFKA 3KAWA 3L3PA 4EZXA 4NPHA 3VEAA 2OW6A 1DKYA 2ND0A 3DPOA 2WINM 4G6QA 3CV5A 1TQWA 4H6IA 1SU6A 3DPPA 4EZZA 3DDGA 1Y2OA 1TQVA 2QKWA 2GAFD 4KIKB 2EWFA 3I04A 3RV0A 4AKVA 4EZYA 1YWMA 2OO2A 4M0MA 3VEBA 3QNIA 3D52A 3L3OM 4EZTA 3VKHA 2YIVX 5FLEX 4IW0A 4HY9A 3T49A 1E1DA 5KBPA 3BUIA 4AVMA 2F7QA 3ABHA 4HR1A 2ALWA 4IM0A 2QFFA 5C5BA 4JWDA 4FZOA 3BVVA 1E2UA 1MJGA 3HAJA 1TQTA 4HYBA 4F00A 1URUA 3QWEA 3ER9B 3T47A 4DCNC 2GF4A 4AZGA 2FYVA 1UPXA 1HTYA 3CZNA 1ZWWA 3BUQA 5FIGA 2ND1A 4AZ5A 1I4LA 4IM2A 3BVXA 4E81A 2F18A 2F7PA 3B51X 3G9GA 2WYIA 2Q12A 4JWIA 2EX3B 1GN9A 3QNJA 3B53X 3DX1A 3QA8A 2X3WA 3SOGA 4JWCA 3BUPA 4H8SA 3I2WA 3O3NB 4KIKA 1I49A 3DPQA 2LM0A 3BUBA 3DX4A 2Z0NA 4R5GA 3O3OB
chains in the Genus database with same CATH topology

2QKWA 1R5EA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 2QKW A;  1R5E A; 
#chains in the Genus database with same CATH topology
 4JN4 A;  3RV1 A;  4R5L A;  4IWP A;  4UDY X;  4AZH A;  4EZS A;  2RAK A;  2F1B A;  3D2F A;  4EZU A;  4JNE A;  3D4Y A;  3HAH A;  1X04 A;  2YLA A;  4WPC A;  2V0O A;  4FZS A;  2RAJ A;  3FD9 A;  1HWW A;  1GNT A;  2PMR A;  3ZED A;  2YKT A;  1R33 A;  2YIB A;  4JWE A;  2Z0O A;  3OWG A;  3T4A G;  3EJU A;  2RAI A;  3BLB A;  1W9M A;  4FM3 A;  3D4Z A;  4JNF A;  4IWQ A;  2OZN B;  3D50 A;  4DYL A;  1WDZ A;  4JL9 A;  3KDR A;  4B9Q A;  3EJS A;  2MI7 A;  4ATM A;  2C08 A;  2ELB A;  2JNK A;  2F1A A;  1ZYL A;  3LLL A;  1OA1 A;  2YL8 A;  4AZC B;  3LVT A;  3HAI A;  3OK8 A;  1SU7 A;  2X5C A;  3DX3 A;  4NSW A;  4WPE A;  4JLC A;  4IM3 A;  3M3W A;  1TQS A;  4UDX X;  3UIT A;  2D4C A;  3RPM A;  2OBM A;  3DX2 A;  2D1L A;  4FZP A;  2YL5 A;  3EJP A;  1I4T A;  1R5E A;  1QX1 A;  2Q13 A;  3OHX M;  4R5I A;  2YLL A;  2YL9 A;  2YI8 A;  3KAV A;  1QWU A;  3BVT A;  1JQK A;  1R34 A;  3DYT A;  1GNL A;  3Q0K A;  3GI7 A;  2JNS A;  4EZV A;  3LMF A;  4AZ7 A;  3ERC C;  3CKD A;  1HXK A;  3T48 A;  4AZB A;  3ER8 C;  3EJR A;  1I4D A;  4H6H A;  1X03 A;  3DDF A;  1DKZ A;  3CAZ A;  2ZXQ A;  3CZS A;  3PLT A;  3BUD A;  4E3C A;  4D8J A;  3I39 X;  1LQ7 A;  4EZN A;  2KHO A;  3C7N A;  2GA9 D;  3O3M B;  2YI9 A;  4EZQ A;  2Z0V A;  3QE6 A;  2Z8Y A;  4AZI A;  2FIC A;  4EZO A;  1O7D C;  2F7O A;  2YIA A;  3Q84 A;  3D2E A;  3BVU A;  5E84 A;  4NQI A;  1E9V A;  2WYH A;  4BNE A;  3BVW A;  3A98 A;  1OAO A;  4AZC A;  1PS3 A;  1TQU A;  1U00 A;  4EZP A;  3CVR A;  2QXL A;  3I01 A;  4HR1 B;  3EJQ A;  3EJT A;  4EZW A;  5C5B B;  4AZ6 A;  3ACO A;  1OA0 A;  2X3X A;  3SYV A;  2RT6 A;  4PO2 A;  4I1Q A;  2OW7 A;  2N3K A;  2OBL A;  2PY6 A;  2EFL A;  2X3V A;  3D51 A;  1QWN A;  4EZR A;  2F7R A;  2LXY A;  1DKX A;  4R5K A;  4F01 A;  3T46 A;  3DX0 A;  1SU8 A;  1O7D B;  2NCZ A;  1SUF A;  5TKY A;  4IWO A;  2O0I 1;  3F7W A;  3B52 X;  4R5J A;  2YL6 A;  2EFK A;  3KAW A;  3L3P A;  4EZX A;  4NPH A;  3VEA A;  2OW6 A;  1DKY A;  2ND0 A;  3DPO A;  2WIN M;  4G6Q A;  3CV5 A;  1TQW A;  4H6I A;  1SU6 A;  3DPP A;  4EZZ A;  3DDG A;  1Y2O A;  1TQV A;  2QKW A;  2GAF D;  4KIK B;  2EWF A;  3I04 A;  3RV0 A;  4AKV A;  4EZY A;  1YWM A;  2OO2 A;  4M0M A;  3VEB A;  3QNI A;  3D52 A;  3L3O M;  4EZT A;  3VKH A;  2YIV X;  5FLE X;  4IW0 A;  4HY9 A;  3T49 A;  1E1D A;  5KBP A;  3BUI A;  4AVM A;  2F7Q A;  3ABH A;  4HR1 A;  2ALW A;  4IM0 A;  2QFF A;  5C5B A;  4JWD A;  4FZO A;  3BVV A;  1E2U A;  1MJG A;  3HAJ A;  1TQT A;  4HYB A;  4F00 A;  1URU A;  3QWE A;  3ER9 B;  3T47 A;  4DCN C;  2GF4 A;  4AZG A;  2FYV A;  1UPX A;  1HTY A;  3CZN A;  1ZWW A;  3BUQ A;  5FIG A;  2ND1 A;  4AZ5 A;  1I4L A;  4IM2 A;  3BVX A;  4E81 A;  2F18 A;  2F7P A;  3B51 X;  3G9G A;  2WYI A;  2Q12 A;  4JWI A;  2EX3 B;  1GN9 A;  3QNJ A;  3B53 X;  3DX1 A;  3QA8 A;  2X3W A;  3SOG A;  4JWC A;  3BUP A;  4H8S A;  3I2W A;  3O3N B;  4KIK A;  1I49 A;  3DPQ A;  2LM0 A;  3BUB A;  3DX4 A;  2Z0N A;  4R5G A;  3O3O B; 
#chains in the Genus database with same CATH homology
 2QKW A;  1R5E A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2QKWA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations