3ACOA

Crystal structure of the efc/f-bar domain of human pacsin2/syndapin ii (2.7 a)
Total Genus 101

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
101
sequence length
284
structure length
284
Chain Sequence
DSFWEVGNYKRTVKRIDDGHRLCSDLMNCLHERARIEKAYAQQLTEWARRWRQLVEKGPQYGTVEKAWMAFMSEAERVSELHLEVKASLMNDDFEKIKNWQKEAFHKQMMGGFKETKEAEDGFRKAQKPWAKKLKEVEAAKKAHHAACKEEKLAISREANSKADPSLNPEQLKKLQDKIEKCKQDVLKTKEKYEKSLKELDQGTPQYMENMEQVFEQCQQFEEKRLRFFREVLLEVQKHLDLSNVAGYKAIYHDLEQSIRAADAVEDLRWFRANHGPGMAMNWP

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTIV2 (118-121)AH3 (88-117)TI1 (17-20)AH1 (24-72)AH2 (78-83)TIV7 (220-224)TIV1 (117-120)AH5 (184-217)TIV3 (122-127)TIV4 (123-128)AH4 (129-174)TI2 (176-179)TIV5 (174-177)TIV6 (179-182)TI3 (218-221)TI4 (219-222)TIV8 (221-225)AH6 (227-255)TI5 (256-259)TI6 (257-260)AH7 (261-276)TII1 (20-23)O1 (83-86)Updating...
connected with : NaN
molecule tags Endocytosis
source organism Homo sapiens
publication title Mapping of the basic amino-acid residues responsible for tubulation and cellular protrusion by the EFC/F-BAR domain of pacsin2/Syndapin II
pubmed doi rcsb
molecule keywords Protein kinase C and casein kinase substrate in neurons prot
total genus 101
structure length 284
sequence length 284
chains with identical sequence B
ec nomenclature
pdb deposition date 2010-01-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00611 FCH Fes/CIP4, and EFC/F-BAR homology domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1270.60 Mainly Alpha Up-down Bundle Substrate Binding Domain Of Dnak; Chain:A; Domain 2 Arfaptin homology (AH) domain/BAR domain 3acoA01
1I49A 3HAIA 2Z0OA 3LLLA 3DYTA 2Q12A 2Z0NA 3ACOA 1URUA 2RAIA 3Q0KA 4AVMA 2X3VA 4AKVA 4ATMA 2D4CA 3SOGA 4NQIA 3ABHA 4WPEA 1ZWWA 2FICA 3CAZA 2D1LA 3Q84A 3PLTA 3I2WA 1I4TA 1X03A 3HAHA 5C5BA 4BNEA 4DYLA 3G9GA 2X3WA 3QNIA 2V0OA 5C5BB 3QE6A 3M3WA 2EFKA 2Z0VA 3QWEA 2EFLA 4FZSA 1WDZA 2RAKA 3OK8A 2RAJA 2YKTA 3HAJA 3SYVA 4I1QA 1Y2OA 2Q13A 2C08A 2X3XA 4WPCA 4DCNC 1I4LA 4NSWA 1I4DA 2ELBA 4H8SA 1X04A
chains in the Genus database with same CATH superfamily
3QNJA 1O7DB 2Z0NA 4JWCA 3CV5A 3BUBA 2YLLA 3Q84A 3PLTA 1X03A 3OHXM 4EZVA 4UDXX 4AZBA 3KAVA 4HR1B 3B52X 4F00A 4AZIA 3F7WA 2FICA 3BUDA 4AZCA 3B53X 4PO2A 5C5BA 3CZSA 2EFLA 3T4AG 3FD9A 2RAJA 1E9VA 1Y2OA 2YL6A 2C08A 4EZUA 1I4LA 3DX3A 4D8JA 3LLLA 3A98A 4NPHA 3DX2A 2RAIA 1QX1A 3SOGA 4EZPA 1SU8A 3CAZA 2YIAA 3T49A 2YIVX 4R5LA 2EFKA 2Z0VA 2YI8A 3BLBA 4DCNC 4IW0A 4H6HA 3UITA 4HR1A 4HYBA 3DX1A 4EZXA 2F7QA 2YLAA 3L3OM 3ER9B 2YKTA 2PMRA 1TQWA 3BUPA 3OWGA 4R5KA 1R5EA 1JQKA 1U00A 3BVTA 4AZCB 4JL9A 3LMFA 4NSWA 1MJGA 1QWNA 2WYHA 4EZNA 2QFFA 3I39X 2MI7A 4DYLA 3QNIA 2FYVA 2N3KA 3D50A 3GI7A 1PS3A 4AZ5A 2NCZA 2YL5A 1TQSA 3KAWA 1I4DA 2OZNB 2X3XA 3O3MB 3ER8C 1HXKA 1HTYA 4EZYA 4AKVA 4HY9A 3VKHA 4NQIA 2D1LA 4AZHA 5E84A 2RT6A 4BNEA 4G6QA 1GNLA 4I1QA 4R5GA 2LXYA 4M0MA 5FLEX 1SUFA 3O3NB 4IM3A 4AZGA 3Q0KA 3EJSA 4B9QA 4WPEA 3BVVA 2F1BA 3D4ZA 2EX3B 2F7PA 1O7DC 1WDZA 2X5CA 4AZ6A 2OO2A 4H8SA 4IM2A 4JN4A 3L3PA 1GN9A 3BVXA 2X3VA 2D4CA 4AZ7A 2YL8A 2ND1A 3D52A 3EJUA 4FM3A 3G9GA 1HWWA 2QXLA 3CKDA 4JNFA 1DKXA 4E81A 2ND0A 4EZQA 4EZWA 3B51X 2YI9A 1DKYA 2OW6A 3QA8A 3KDRA 2V0OA 3D2FA 3QWEA 3ERCC 2LM0A 4IWPA 3ZEDA 1TQVA 1TQTA 2F7RA 2EWFA 4H6IA 4EZZA 4JLCA 4FZPA 4E3CA 4EZTA 1E1DA 2YL9A 4JWDA 4UDYX 3QE6A 4IM0A 3EJTA 5KBPA 3SYVA 2Q13A 3CVRA 3VEBA 4WPCA 1W9MA 1DKZA 1I49A 2WINM 2GAFD 3HAIA 3I04A 3DX4A 2F7OA 5TKYA 1URUA 4EZSA 3T46A 3T47A 2OBLA 5FIGA 2JNKA 2OBMA 1I4TA 3HAHA 2YIBA 4JWEA 3DX0A 4FZOA 4KIKB 1YWMA 3O3OB 1SU7A 3BUQA 4IWQA 2ALWA 2RAKA 1QWUA 2WYIA 3EJPA 3DPPA 3I01A 1UPXA 3RPMA 3D4YA 3ACOA 4R5JA 3BVUA 4ATMA 2QKWA 3ABHA 3DDFA 3DPOA 3D2EA 1OAOA 3I2WA 4JNEA 3BVWA 3D51A 1OA0A 1OA1A 4IWOA 1TQUA 2Z8YA 4EZRA 2F18A 3DPQA 1X04A 2Z0OA 4KIKA 1E2UA 4AVMA 3VEAA 2GF4A 2F1AA 2ZXQA 1ZWWA 3DDGA 3EJQA 4EZOA 3M3WA 4F01A 1R34A 3OK8A 3LVTA 3DYTA 2Q12A 3C7NA 1LQ7A 2GA9D 3RV0A 1GNTA 4JWIA 2KHOA 4R5IA 3RV1A 1R33A 2OW7A 1SU6A 2X3WA 3EJRA 5C5BB 4FZSA 3BUIA 1ZYLA 2O0I1 3T48A 3HAJA 2JNSA 2PY6A 3CZNA 2ELBA
chains in the Genus database with same CATH topology
1I49A 3HAIA 2Z0OA 3LLLA 3DYTA 2Q12A 2Z0NA 3ACOA 1URUA 2RAIA 3Q0KA 4AVMA 2X3VA 4AKVA 4ATMA 2D4CA 3SOGA 4NQIA 3ABHA 4WPEA 1ZWWA 2FICA 3CAZA 2D1LA 3Q84A 3PLTA 3I2WA 1I4TA 1X03A 3HAHA 5C5BA 4BNEA 4DYLA 3G9GA 2X3WA 3QNIA 2V0OA 5C5BB 3QE6A 3M3WA 2EFKA 2Z0VA 3QWEA 2EFLA 4FZSA 1WDZA 2RAKA 3OK8A 2RAJA 2YKTA 3HAJA 3SYVA 4I1QA 1Y2OA 2Q13A 2C08A 2X3XA 4WPCA 4DCNC 1I4LA 4NSWA 1I4DA 2ELBA 4H8SA 1X04A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1I49 A;  3HAI A;  2Z0O A;  3LLL A;  3DYT A;  2Q12 A;  2Z0N A;  3ACO A;  1URU A;  2RAI A;  3Q0K A;  4AVM A;  2X3V A;  4AKV A;  4ATM A;  2D4C A;  3SOG A;  4NQI A;  3ABH A;  4WPE A;  1ZWW A;  2FIC A;  3CAZ A;  2D1L A;  3Q84 A;  3PLT A;  3I2W A;  1I4T A;  1X03 A;  3HAH A;  5C5B A;  4BNE A;  4DYL A;  3G9G A;  2X3W A;  3QNI A;  2V0O A;  5C5B B;  3QE6 A;  3M3W A;  2EFK A;  2Z0V A;  3QWE A;  2EFL A;  4FZS A;  1WDZ A;  2RAK A;  3OK8 A;  2RAJ A;  2YKT A;  3HAJ A;  3SYV A;  4I1Q A;  1Y2O A;  2Q13 A;  2C08 A;  2X3X A;  4WPC A;  4DCN C;  1I4L A;  4NSW A;  1I4D A;  2ELB A;  4H8S A;  1X04 A; 
#chains in the Genus database with same CATH topology
 3QNJ A;  1O7D B;  2Z0N A;  4JWC A;  3CV5 A;  3BUB A;  2YLL A;  3Q84 A;  3PLT A;  1X03 A;  3OHX M;  4EZV A;  4UDX X;  4AZB A;  3KAV A;  4HR1 B;  3B52 X;  4F00 A;  4AZI A;  3F7W A;  2FIC A;  3BUD A;  4AZC A;  3B53 X;  4PO2 A;  5C5B A;  3CZS A;  2EFL A;  3T4A G;  3FD9 A;  2RAJ A;  1E9V A;  1Y2O A;  2YL6 A;  2C08 A;  4EZU A;  1I4L A;  3DX3 A;  4D8J A;  3LLL A;  3A98 A;  4NPH A;  3DX2 A;  2RAI A;  1QX1 A;  3SOG A;  4EZP A;  1SU8 A;  3CAZ A;  2YIA A;  3T49 A;  2YIV X;  4R5L A;  2EFK A;  2Z0V A;  2YI8 A;  3BLB A;  4DCN C;  4IW0 A;  4H6H A;  3UIT A;  4HR1 A;  4HYB A;  3DX1 A;  4EZX A;  2F7Q A;  2YLA A;  3L3O M;  3ER9 B;  2YKT A;  2PMR A;  1TQW A;  3BUP A;  3OWG A;  4R5K A;  1R5E A;  1JQK A;  1U00 A;  3BVT A;  4AZC B;  4JL9 A;  3LMF A;  4NSW A;  1MJG A;  1QWN A;  2WYH A;  4EZN A;  2QFF A;  3I39 X;  2MI7 A;  4DYL A;  3QNI A;  2FYV A;  2N3K A;  3D50 A;  3GI7 A;  1PS3 A;  4AZ5 A;  2NCZ A;  2YL5 A;  1TQS A;  3KAW A;  1I4D A;  2OZN B;  2X3X A;  3O3M B;  3ER8 C;  1HXK A;  1HTY A;  4EZY A;  4AKV A;  4HY9 A;  3VKH A;  4NQI A;  2D1L A;  4AZH A;  5E84 A;  2RT6 A;  4BNE A;  4G6Q A;  1GNL A;  4I1Q A;  4R5G A;  2LXY A;  4M0M A;  5FLE X;  1SUF A;  3O3N B;  4IM3 A;  4AZG A;  3Q0K A;  3EJS A;  4B9Q A;  4WPE A;  3BVV A;  2F1B A;  3D4Z A;  2EX3 B;  2F7P A;  1O7D C;  1WDZ A;  2X5C A;  4AZ6 A;  2OO2 A;  4H8S A;  4IM2 A;  4JN4 A;  3L3P A;  1GN9 A;  3BVX A;  2X3V A;  2D4C A;  4AZ7 A;  2YL8 A;  2ND1 A;  3D52 A;  3EJU A;  4FM3 A;  3G9G A;  1HWW A;  2QXL A;  3CKD A;  4JNF A;  1DKX A;  4E81 A;  2ND0 A;  4EZQ A;  4EZW A;  3B51 X;  2YI9 A;  1DKY A;  2OW6 A;  3QA8 A;  3KDR A;  2V0O A;  3D2F A;  3QWE A;  3ERC C;  2LM0 A;  4IWP A;  3ZED A;  1TQV A;  1TQT A;  2F7R A;  2EWF A;  4H6I A;  4EZZ A;  4JLC A;  4FZP A;  4E3C A;  4EZT A;  1E1D A;  2YL9 A;  4JWD A;  4UDY X;  3QE6 A;  4IM0 A;  3EJT A;  5KBP A;  3SYV A;  2Q13 A;  3CVR A;  3VEB A;  4WPC A;  1W9M A;  1DKZ A;  1I49 A;  2WIN M;  2GAF D;  3HAI A;  3I04 A;  3DX4 A;  2F7O A;  5TKY A;  1URU A;  4EZS A;  3T46 A;  3T47 A;  2OBL A;  5FIG A;  2JNK A;  2OBM A;  1I4T A;  3HAH A;  2YIB A;  4JWE A;  3DX0 A;  4FZO A;  4KIK B;  1YWM A;  3O3O B;  1SU7 A;  3BUQ A;  4IWQ A;  2ALW A;  2RAK A;  1QWU A;  2WYI A;  3EJP A;  3DPP A;  3I01 A;  1UPX A;  3RPM A;  3D4Y A;  3ACO A;  4R5J A;  3BVU A;  4ATM A;  2QKW A;  3ABH A;  3DDF A;  3DPO A;  3D2E A;  1OAO A;  3I2W A;  4JNE A;  3BVW A;  3D51 A;  1OA0 A;  1OA1 A;  4IWO A;  1TQU A;  2Z8Y A;  4EZR A;  2F18 A;  3DPQ A;  1X04 A;  2Z0O A;  4KIK A;  1E2U A;  4AVM A;  3VEA A;  2GF4 A;  2F1A A;  2ZXQ A;  1ZWW A;  3DDG A;  3EJQ A;  4EZO A;  3M3W A;  4F01 A;  1R34 A;  3OK8 A;  3LVT A;  3DYT A;  2Q12 A;  3C7N A;  1LQ7 A;  2GA9 D;  3RV0 A;  1GNT A;  4JWI A;  2KHO A;  4R5I A;  3RV1 A;  1R33 A;  2OW7 A;  1SU6 A;  2X3W A;  3EJR A;  5C5B B;  4FZS A;  3BUI A;  1ZYL A;  2O0I 1;  3T48 A;  3HAJ A;  2JNS A;  2PY6 A;  3CZN A;  2ELB A; 
#chains in the Genus database with same CATH homology
 1I49 A;  3HAI A;  2Z0O A;  3LLL A;  3DYT A;  2Q12 A;  2Z0N A;  3ACO A;  1URU A;  2RAI A;  3Q0K A;  4AVM A;  2X3V A;  4AKV A;  4ATM A;  2D4C A;  3SOG A;  4NQI A;  3ABH A;  4WPE A;  1ZWW A;  2FIC A;  3CAZ A;  2D1L A;  3Q84 A;  3PLT A;  3I2W A;  1I4T A;  1X03 A;  3HAH A;  5C5B A;  4BNE A;  4DYL A;  3G9G A;  2X3W A;  3QNI A;  2V0O A;  5C5B B;  3QE6 A;  3M3W A;  2EFK A;  2Z0V A;  3QWE A;  2EFL A;  4FZS A;  1WDZ A;  2RAK A;  3OK8 A;  2RAJ A;  2YKT A;  3HAJ A;  3SYV A;  4I1Q A;  1Y2O A;  2Q13 A;  2C08 A;  2X3X A;  4WPC A;  4DCN C;  1I4L A;  4NSW A;  1I4D A;  2ELB A;  4H8S A;  1X04 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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