3G9G | Genus

Total Genus 111

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	111
sequence length	250
structure length	250
Chain Sequence	MTEQRTKYADSILTTKSPYEATETIRIRLSQVKLLNKDFYLLFKELANLKRNYAQQLRKIIAENEDITKILNAQMIESNVLTPQEMSAFRFNSLGELRNVWDTVIEELKSDLKSSTEYYNTLDQQVVRELKESVENNTSWRESKDLHSKLSKNAASIEHYSKNNENSSHLEEARRQWDQQSPYLFELFETIDYNRLDTLKNCMLRFQTSFSDYLLNTTKECETVMTKFLAFEPQSEIDRFAKDASQYNFQ

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Endocytosis
source organism	Saccharomyces cerevisiae
publication title	Syp1 is a conserved endocytic adaptor that contains domains involved in cargo selection and membrane tubulation. pubmed doi rcsb
molecule keywords	Suppressor of yeast profilin deletion
total genus	111
structure length	250
sequence length	250
ec nomenclature
pdb deposition date	2009-02-13

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.20.1270.60	Mainly Alpha	Up-down Bundle	Substrate Binding Domain Of Dnak; Chain:A; Domain 2	Arfaptin homology (AH) domain/BAR domain	3g9gA00

1I4TA 1I4LA 5C5BB 5C5BA 4WPCA 3Q0KA 2EFKA 4BNEA 2D1LA 3SYVA 2D4CA 1X03A 4WPEA 2FICA 3HAHA 1ZWWA 4DYLA 2V0OA 3HAIA 3I2WA 4AVMA 3OK8A 3PLTA 3ACOA 2C08A 1WDZA 2RAJA 2Z0NA 2ELBA 2X3XA 3ABHA 4FZSA 3DYTA 3G9GA 2Z0VA 3LLLA 2YKTA 3CAZA 4H8SA 1X04A 4NQIA 1URUA 3QNIA 2X3WA 2Q12A 3QE6A 3SOGA 4AKVA 2EFLA 3QWEA 2Q13A 3HAJA 2RAKA 2RAIA 3Q84A 1I49A 1Y2OA 2Z0OA 1I4DA 4I1QA 2X3VA 4NSWA 4ATMA 3M3WA 4DCNC
chains in the Genus database with same CATH superfamily

4EZQA 2YL8A 4H6HA 2EWFA 3KAVA 2OBMA 4EZXA 4AZBA 3VEBA 2GA9D 3DPOA 5TKYA 4EZTA 3SOGA 3QWEA 2Q13A 1SUFA 1YWMA 2X3VA 3ZEDA 2YLAA 4M0MA 2OO2A 3M3WA 4JWCA 4R5IA 3UITA 4E3CA 2QFFA 4JLCA 2YIAA 2F1BA 4JWDA 3OK8A 3ACOA 2F7QA 1U00A 1SU8A 3ERCC 3B53X 4B9QA 3I39X 2OW6A 3O3NB 4FZPA 2YL9A 4AZCA 3D4ZA 2D4CA 3DDGA 3D52A 4AZ7A 3BUBA 3ABHA 3EJTA 2F7PA 2Q12A 3T48A 4G6QA 3T4AG 5FLEX 5C5BB 5FIGA 3T49A 3BVUA 1OA0A 2V0OA 1UPXA 3BVXA 3LLLA 2YKTA 4HY9A 3ER9B 4FM3A 3DX2A 2RT6A 1Y2OA 3EJSA 4I1QA 3T47A 4UDXX 3BUQA 3DPQA 2MI7A 2YL5A 4JNEA 3L3OM 4KIKB 4F00A 2LM0A 2C08A 5E84A 3BUIA 1OA1A 2YI8A 3DX3A 3KDRA 2PMRA 1URUA 2RAKA 1I49A 2Z0OA 3C7NA 2ALWA 3FD9A 1E1DA 4E81A 4EZWA 4HR1B 4WPEA 1SU6A 2F7OA 1DKYA 2WYIA 1GNLA 3DYTA 4R5GA 3HAJA 4JNFA 3OHXM 1E2UA 4PO2A 4IWPA 4JL9A 2YI9A 2YIVX 1MJGA 2LXYA 4AKVA 2RAIA 1LQ7A 5C5BA 4EZOA 4IWQA 2FICA 4JN4A 3RV1A 2EX3B 2OW7A 2WINM 2ELBA 2X5CA 3LMFA 1QWNA 4EZNA 3VEAA 1PS3A 4EZPA 2JNKA 1I4LA 2QXLA 1HTYA 3DX1A 3L3PA 3SYVA 4IWOA 1ZWWA 4IW0A 3OWGA 4UDYX 3G9GA 1QWUA 3BVWA 1W9MA 1SU7A 1R5EA 2NCZA 3Q84A 3BUPA 3F7WA 3D50A 3I01A 4H6IA 2D1LA 1O7DC 1X03A 4AZ5A 4DYLA 3A98A 3D2FA 5KBPA 4IM2A 2F7RA 2WYHA 4AVMA 1R33A 3BUDA 2YLLA 2X3XA 3DPPA 3ER8C 4JWEA 1TQUA 4AZIA 3T46A 2O0I1 3O3MB 4ATMA 4AZGA 4F01A 4NPHA 4WPCA 2ZXQA 3DX4A 3KAWA 4EZUA 3GI7A 3QNJA 4EZVA 1WDZA 2YL6A 3QNIA 2QKWA 1I4TA 3BLBA 2EFKA 4EZRA 4AZ6A 3RPMA 3HAIA 3DX0A 4EZSA 3EJQA 4IM3A 3CZSA 2Z0NA 2Z0VA 3EJRA 2N3KA 3EJPA 3LVTA 1QX1A 2ND1A 2JNSA 3VKHA 3Q0KA 1JQKA 1TQVA 4FZOA 2ND0A 3DDFA 2F18A 3I2WA 1DKZA 2KHOA 3QA8A 4FZSA 2Z8YA 2GF4A 3EJUA 2X3WA 4EZZA 3CVRA 1OAOA 3BVTA 4D8JA 2PY6A 2GAFD 3CZNA 4KIKA 3O3OB 1TQSA 2F1AA 4R5KA 1R34A 3CAZA 4H8SA 3B52X 4NSWA 3CV5A 2YIBA 3D2EA 4DCNC 1TQWA 4AZCB 3CKDA 3B51X 3I04A 4IM0A 1TQTA 4BNEA 3HAHA 4HR1A 4R5JA 3BVVA 1HWWA 4EZYA 1O7DB 3D4YA 1ZYLA 1X04A 4NQIA 2EFLA 1HXKA 4JWIA 3D51A 1E9VA 1DKXA 4HYBA 4AZHA 1GNTA 3RV0A 3PLTA 2RAJA 1GN9A 2OBLA 3QE6A 4R5LA 1I4DA 2FYVA 2OZNB
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 1I4T A;  1I4L A;  5C5B B;  5C5B A;  4WPC A;  3Q0K A;  2EFK A;  4BNE A;  2D1L A;  3SYV A;  2D4C A;  1X03 A;  4WPE A;  2FIC A;  3HAH A;  1ZWW A;  4DYL A;  2V0O A;  3HAI A;  3I2W A;  4AVM A;  3OK8 A;  3PLT A;  3ACO A;  2C08 A;  1WDZ A;  2RAJ A;  2Z0N A;  2ELB A;  2X3X A;  3ABH A;  4FZS A;  3DYT A;  3G9G A;  2Z0V A;  3LLL A;  2YKT A;  3CAZ A;  4H8S A;  1X04 A;  4NQI A;  1URU A;  3QNI A;  2X3W A;  2Q12 A;  3QE6 A;  3SOG A;  4AKV A;  2EFL A;  3QWE A;  2Q13 A;  3HAJ A;  2RAK A;  2RAI A;  3Q84 A;  1I49 A;  1Y2O A;  2Z0O A;  1I4D A;  4I1Q A;  2X3V A;  4NSW A;  4ATM A;  3M3W A;  4DCN C; 
#chains in the Genus database with same CATH topology
 4EZQ A;  2YL8 A;  4H6H A;  2EWF A;  3KAV A;  2OBM A;  4EZX A;  4AZB A;  3VEB A;  2GA9 D;  3DPO A;  5TKY A;  4EZT A;  3SOG A;  3QWE A;  2Q13 A;  1SUF A;  1YWM A;  2X3V A;  3ZED A;  2YLA A;  4M0M A;  2OO2 A;  3M3W A;  4JWC A;  4R5I A;  3UIT A;  4E3C A;  2QFF A;  4JLC A;  2YIA A;  2F1B A;  4JWD A;  3OK8 A;  3ACO A;  2F7Q A;  1U00 A;  1SU8 A;  3ERC C;  3B53 X;  4B9Q A;  3I39 X;  2OW6 A;  3O3N B;  4FZP A;  2YL9 A;  4AZC A;  3D4Z A;  2D4C A;  3DDG A;  3D52 A;  4AZ7 A;  3BUB A;  3ABH A;  3EJT A;  2F7P A;  2Q12 A;  3T48 A;  4G6Q A;  3T4A G;  5FLE X;  5C5B B;  5FIG A;  3T49 A;  3BVU A;  1OA0 A;  2V0O A;  1UPX A;  3BVX A;  3LLL A;  2YKT A;  4HY9 A;  3ER9 B;  4FM3 A;  3DX2 A;  2RT6 A;  1Y2O A;  3EJS A;  4I1Q A;  3T47 A;  4UDX X;  3BUQ A;  3DPQ A;  2MI7 A;  2YL5 A;  4JNE A;  3L3O M;  4KIK B;  4F00 A;  2LM0 A;  2C08 A;  5E84 A;  3BUI A;  1OA1 A;  2YI8 A;  3DX3 A;  3KDR A;  2PMR A;  1URU A;  2RAK A;  1I49 A;  2Z0O A;  3C7N A;  2ALW A;  3FD9 A;  1E1D A;  4E81 A;  4EZW A;  4HR1 B;  4WPE A;  1SU6 A;  2F7O A;  1DKY A;  2WYI A;  1GNL A;  3DYT A;  4R5G A;  3HAJ A;  4JNF A;  3OHX M;  1E2U A;  4PO2 A;  4IWP A;  4JL9 A;  2YI9 A;  2YIV X;  1MJG A;  2LXY A;  4AKV A;  2RAI A;  1LQ7 A;  5C5B A;  4EZO A;  4IWQ A;  2FIC A;  4JN4 A;  3RV1 A;  2EX3 B;  2OW7 A;  2WIN M;  2ELB A;  2X5C A;  3LMF A;  1QWN A;  4EZN A;  3VEA A;  1PS3 A;  4EZP A;  2JNK A;  1I4L A;  2QXL A;  1HTY A;  3DX1 A;  3L3P A;  3SYV A;  4IWO A;  1ZWW A;  4IW0 A;  3OWG A;  4UDY X;  3G9G A;  1QWU A;  3BVW A;  1W9M A;  1SU7 A;  1R5E A;  2NCZ A;  3Q84 A;  3BUP A;  3F7W A;  3D50 A;  3I01 A;  4H6I A;  2D1L A;  1O7D C;  1X03 A;  4AZ5 A;  4DYL A;  3A98 A;  3D2F A;  5KBP A;  4IM2 A;  2F7R A;  2WYH A;  4AVM A;  1R33 A;  3BUD A;  2YLL A;  2X3X A;  3DPP A;  3ER8 C;  4JWE A;  1TQU A;  4AZI A;  3T46 A;  2O0I 1;  3O3M B;  4ATM A;  4AZG A;  4F01 A;  4NPH A;  4WPC A;  2ZXQ A;  3DX4 A;  3KAW A;  4EZU A;  3GI7 A;  3QNJ A;  4EZV A;  1WDZ A;  2YL6 A;  3QNI A;  2QKW A;  1I4T A;  3BLB A;  2EFK A;  4EZR A;  4AZ6 A;  3RPM A;  3HAI A;  3DX0 A;  4EZS A;  3EJQ A;  4IM3 A;  3CZS A;  2Z0N A;  2Z0V A;  3EJR A;  2N3K A;  3EJP A;  3LVT A;  1QX1 A;  2ND1 A;  2JNS A;  3VKH A;  3Q0K A;  1JQK A;  1TQV A;  4FZO A;  2ND0 A;  3DDF A;  2F18 A;  3I2W A;  1DKZ A;  2KHO A;  3QA8 A;  4FZS A;  2Z8Y A;  2GF4 A;  3EJU A;  2X3W A;  4EZZ A;  3CVR A;  1OAO A;  3BVT A;  4D8J A;  2PY6 A;  2GAF D;  3CZN A;  4KIK A;  3O3O B;  1TQS A;  2F1A A;  4R5K A;  1R34 A;  3CAZ A;  4H8S A;  3B52 X;  4NSW A;  3CV5 A;  2YIB A;  3D2E A;  4DCN C;  1TQW A;  4AZC B;  3CKD A;  3B51 X;  3I04 A;  4IM0 A;  1TQT A;  4BNE A;  3HAH A;  4HR1 A;  4R5J A;  3BVV A;  1HWW A;  4EZY A;  1O7D B;  3D4Y A;  1ZYL A;  1X04 A;  4NQI A;  2EFL A;  1HXK A;  4JWI A;  3D51 A;  1E9V A;  1DKX A;  4HYB A;  4AZH A;  1GNT A;  3RV0 A;  3PLT A;  2RAJ A;  1GN9 A;  2OBL A;  3QE6 A;  4R5L A;  1I4D A;  2FYV A;  2OZN B; 
#chains in the Genus database with same CATH homology
 1I4T A;  1I4L A;  5C5B B;  5C5B A;  4WPC A;  3Q0K A;  2EFK A;  4BNE A;  2D1L A;  3SYV A;  2D4C A;  1X03 A;  4WPE A;  2FIC A;  3HAH A;  1ZWW A;  4DYL A;  2V0O A;  3HAI A;  3I2W A;  4AVM A;  3OK8 A;  3PLT A;  3ACO A;  2C08 A;  1WDZ A;  2RAJ A;  2Z0N A;  2ELB A;  2X3X A;  3ABH A;  4FZS A;  3DYT A;  3G9G A;  2Z0V A;  3LLL A;  2YKT A;  3CAZ A;  4H8S A;  1X04 A;  4NQI A;  1URU A;  3QNI A;  2X3W A;  2Q12 A;  3QE6 A;  3SOG A;  4AKV A;  2EFL A;  3QWE A;  2Q13 A;  3HAJ A;  2RAK A;  2RAI A;  3Q84 A;  1I49 A;  1Y2O A;  2Z0O A;  1I4D A;  4I1Q A;  2X3V A;  4NSW A;  4ATM A;  3M3W A;  4DCN C;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3G9GA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN