The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
111
|
sequence length |
290
|
structure length |
270
|
Chain Sequence |
SDSFWEPGNYKRTTKRIEDGYKLCNDLQQLIQERADIEKGYAKSLRTWSKKWGELIEKGPEYGTTEAAWKGVLTESERISDVHMKIKDNLCNDVNSQIKTWQKENYHHTLMQIKERKDLEDLFKKAQKPWAKLLAKVEKAKADYHSACKTERSATHDRVQKTKDQVQKCREKYEQAIAEITKYNSVYIEDMTSVFEKCQTFEKTRLQFFKEILFNVHSCLDLTKVQSLPQIYEEFSHTINNADQQKDLKWWSNNHGINMAMNWPSFVEYT
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Structural requirements for PACSIN/Syndapin operation during zebrafish embryonic notochord development.
pubmed doi rcsb |
| molecule keywords |
Syndapin
|
| molecule tags |
Endocytosis
|
| source organism |
Drosophila melanogaster
|
| total genus |
111
|
| structure length |
270
|
| sequence length |
290
|
| chains with identical sequence |
B
|
| ec nomenclature | |
| pdb deposition date | 2009-06-29 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00611 | FCH | Fes/CIP4, and EFC/F-BAR homology domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Up-down Bundle | Substrate Binding Domain Of Dnak; Chain:A; Domain 2 | Arfaptin homology (AH) domain/BAR domain |
#chains in the Genus database with same CATH superfamily 4DYL A; 1I49 A; 4AVM A; 2Z0V A; 2Z0O A; 2D4C A; 2X3W A; 3Q84 A; 4AKV A; 4NQI A; 4BNE A; 1WDZ A; 3ACO A; 1Y2O A; 3QNI A; 1X03 A; 3QWE A; 2X3X A; 4H8S A; 4DCN C; 3HAJ A; 2EFL A; 3SYV A; 4WPC A; 2EFK A; 1URU A; 1X04 A; 1I4T A; 2FIC A; 2X3V A; 3QE6 A; 2YKT A; 1ZWW A; 5C5B B; 2V0O A; 2Q13 A; 3CAZ A; 3SOG A; 4I1Q A; 2RAI A; 3I2W A; 1I4D A; 2RAK A; 3M3W A; 1I4L A; 2C08 A; 2Z0N A; 4WPE A; 3PLT A; 3OK8 A; 2Q12 A; 3G9G A; 3HAI A; 4ATM A; 2D1L A; 3ABH A; 4NSW A; 2RAJ A; 2ELB A; 3DYT A; 3Q0K A; 5C5B A; 4FZS A; 3HAH A; 3LLL A; #chains in the Genus database with same CATH topology 4EZW A; 1LQ7 A; 4HYB A; 4D8J A; 3HAJ A; 3SYV A; 1X04 A; 3BUQ A; 4FZO A; 3BVT A; 4EZZ A; 2OBM A; 3HAI A; 3CKD A; 3KAV A; 3CZS A; 2GAF D; 1SU7 A; 2YLA A; 3Q84 A; 4JNF A; 2OW6 A; 3O3M B; 1O7D B; 3T47 A; 1R33 A; 4EZY A; 3B53 X; 3GI7 A; 2YKT A; 1HXK A; 2QKW A; 3OK8 A; 4FZS A; 2F1A A; 2F18 A; 3QE6 A; 1ZWW A; 4AZB A; 3DX4 A; 3SOG A; 3OWG A; 4I1Q A; 3QA8 A; 2RAK A; 1OA1 A; 3G9G A; 3O3N B; 3RPM A; 4NPH A; 4AVM A; 1HTY A; 4BNE A; 1X03 A; 3KAW A; 3QWE A; 4KIK B; 1QWU A; 3T4A G; 4E3C A; 1QWN A; 4WPC A; 4UDY X; 1URU A; 2ND1 A; 3I39 X; 2YL5 A; 3M3W A; 4HR1 A; 4FZP A; 3D51 A; 3CV5 A; 4EZV A; 3LMF A; 2D1L A; 3EJR A; 3BUP A; 3ER8 C; 2JNK A; 2F1B A; 2F7P A; 2N3K A; 1TQS A; 4G6Q A; 3EJP A; 1GNT A; 3VEB A; 1I4T A; 2FIC A; 3L3O M; 4HY9 A; 3D4Y A; 4EZP A; 4ATM A; 4EZQ A; 4EZO A; 3Q0K A; 3EJT A; 4DYL A; 1GN9 A; 1U00 A; 4AZ6 A; 2LXY A; 4H8S A; 2EFL A; 1OAO A; 4JWD A; 3VKH A; 4JL9 A; 2JNS A; 2Z0N A; 2YL8 A; 4EZT A; 2Q12 A; 3EJQ A; 3B51 X; 4R5G A; 4F00 A; 3VEA A; 1SUF A; 2WIN M; 4IM2 A; 4AKV A; 1Y2O A; 2QFF A; 5FLE X; 2F7R A; 3CAZ A; 2Q13 A; 2YIB A; 1JQK A; 3T48 A; 2YIA A; 3ERC C; 4AZI A; 1I49 A; 3DX3 A; 2KHO A; 2NCZ A; 3DX0 A; 3ER9 B; 4R5K A; 2X5C A; 2O0I 1; 3CZN A; 4AZC A; 2V0O A; 2YLL A; 3DX2 A; 1I4L A; 1E1D A; 2PMR A; 2YL6 A; 4WPE A; 1E9V A; 4JLC A; 4R5J A; 3CVR A; 3QNI A; 4AZG A; 4HR1 B; 3A98 A; 3C7N A; 4UDX X; 4IWP A; 3T46 A; 3KDR A; 3PLT A; 5KBP A; 4JWC A; 5C5B A; 2YI8 A; 4AZ5 A; 3I01 A; 2D4C A; 4M0M A; 4E81 A; 3F7W A; 2X3X A; 2YL9 A; 4EZR A; 2Z8Y A; 4JWI A; 2F7O A; 1DKX A; 1DKZ A; 2F7Q A; 2OW7 A; 4KIK A; 3I2W A; 2EX3 B; 4EZU A; 3D50 A; 3EJS A; 3DDF A; 2ELB A; 1W9M A; 1TQU A; 3DYT A; 3EJU A; 2ZXQ A; 3OHX M; 2WYI A; 4EZX A; 4JWE A; 2OBL A; 3QNJ A; 4NQI A; 1PS3 A; 1R5E A; 4JNE A; 2QXL A; 2X3V A; 1YWM A; 1I4D A; 3D4Z A; 1E2U A; 3RV1 A; 1SU6 A; 4AZ7 A; 4IWO A; 2Z0V A; 2LM0 A; 4EZS A; 3ACO A; 1GNL A; 5FIG A; 2OO2 A; 3BVU A; 3DDG A; 3BVV A; 1QX1 A; 3BUI A; 4IWQ A; 2YI9 A; 4EZN A; 3HAH A; 4H6H A; 3O3O B; 3ZED A; 1WDZ A; 4AZC B; 4AZH A; 3BLB A; 3D2F A; 2GA9 D; 3DX1 A; 1SU8 A; 2RAI A; 2C08 A; 3LVT A; 3RV0 A; 2ND0 A; 2RT6 A; 5E84 A; 2Z0O A; 2X3W A; 1UPX A; 4DCN C; 1TQW A; 4H6I A; 4JN4 A; 2EFK A; 4F01 A; 1ZYL A; 5C5B B; 4B9Q A; 4IW0 A; 3BVW A; 2GF4 A; 1TQT A; 4R5I A; 3BVX A; 2YIV X; 4FM3 A; 2PY6 A; 3UIT A; 1OA0 A; 4IM3 A; 2WYH A; 4R5L A; 1O7D C; 3DPO A; 2EWF A; 3I04 A; 1MJG A; 3D2E A; 5TKY A; 3BUB A; 3ABH A; 3B52 X; 4IM0 A; 3DPQ A; 1TQV A; 1DKY A; 3D52 A; 3FD9 A; 2ALW A; 2FYV A; 3L3P A; 1HWW A; 2OZN B; 1R34 A; 3DPP A; 4NSW A; 2MI7 A; 3T49 A; 2RAJ A; 3LLL A; 3BUD A; 4PO2 A; #chains in the Genus database with same CATH homology 4DYL A; 1I49 A; 4AVM A; 2Z0V A; 2Z0O A; 2D4C A; 2X3W A; 3Q84 A; 4AKV A; 4NQI A; 4BNE A; 1WDZ A; 3ACO A; 1Y2O A; 3QNI A; 1X03 A; 3QWE A; 2X3X A; 4H8S A; 4DCN C; 3HAJ A; 2EFL A; 3SYV A; 4WPC A; 2EFK A; 1URU A; 1X04 A; 1I4T A; 2FIC A; 2X3V A; 3QE6 A; 2YKT A; 1ZWW A; 5C5B B; 2V0O A; 2Q13 A; 3CAZ A; 3SOG A; 4I1Q A; 2RAI A; 3I2W A; 1I4D A; 2RAK A; 3M3W A; 1I4L A; 2C08 A; 2Z0N A; 4WPE A; 3PLT A; 3OK8 A; 2Q12 A; 3G9G A; 3HAI A; 4ATM A; 2D1L A; 3ABH A; 4NSW A; 2RAJ A; 2ELB A; 3DYT A; 3Q0K A; 5C5B A; 4FZS A; 3HAH A; 3LLL A;
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