3LLLA

Crystal structure of mouse pacsin2 f-bar domain
Total Genus 105

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
105
sequence length
287
structure length
287
Chain Sequence
DSFWEVGNYKRTVKRIDDGHRLCGDLMNCLHERARIEKAYAQQLTEWARRWRQLVEKGPQYGTVEKAWIAVMSEAERVSELHLEVKASLMNEDFEKIKNWQKEAFHKQMMGGFKETKEAEDGFRKAQKPWAKKLKEVEAAKKAHHTACKEEKLAISREANSKADPSLNPEQLKKLQDKIEKCKQDVLKTKDKYEKSLKELDQTTPQYMENMEQVFEQCQQFEEKRLRFFREVLLEVQKHLDLSNVASYKTIYRELEQSIKAADAVEDLRWFRANHGPGMAMNWPQFE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (25-73)TI1 (18-21)AH2 (78-119)AH7 (220-256)TI2 (124-127)AH3 (131-161)AH6 (199-218)O1 (180-182)TIV2 (177-180)AH5 (185-194)TIV3 (195-198)EMPTYAH8 (262-277)TI4 (258-261)AH4 (164-176)TI3 (194-197)O2 (277-279)TII1 (21-24)Updating...
connected with : NaN
molecule tags Endocytosis
source organism Mus musculus
publication title A hinge in the distal end of the PACSIN 2 F-BAR domain may contribute to membrane-curvature sensing.
pubmed doi rcsb
molecule keywords Protein kinase C and casein kinase substrate in neurons prot
total genus 105
structure length 287
sequence length 287
chains with identical sequence B
ec nomenclature
pdb deposition date 2010-01-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00611 FCH Fes/CIP4, and EFC/F-BAR homology domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1270.60 Mainly Alpha Up-down Bundle Substrate Binding Domain Of Dnak; Chain:A; Domain 2 Arfaptin homology (AH) domain/BAR domain 3lllA01
1I4TA 1Y2OA 1ZWWA 2X3VA 3HAHA 1WDZA 3Q0KA 2C08A 4NSWA 3G9GA 5C5BB 3Q84A 3PLTA 1X03A 2D1LA 2D4CA 2X3WA 3HAJA 4I1QA 1I49A 4BNEA 1URUA 3ABHA 1I4DA 4WPEA 2EFKA 2Z0VA 2RAKA 2FICA 5C5BA 4WPCA 3I2WA 2V0OA 3QWEA 4H8SA 3M3WA 4FZSA 2YKTA 1I4LA 4AVMA 2RAJA 3QNIA 2Q13A 3ACOA 3LLLA 2X3XA 2Q12A 3SOGA 4DYLA 3SYVA 4NQIA 3CAZA 2EFLA 2Z0OA 2Z0NA 4ATMA 3OK8A 2ELBA 3HAIA 4DCNC 3DYTA 1X04A 3QE6A 2RAIA 4AKVA
chains in the Genus database with same CATH superfamily
1DKXA 3BVVA 4I1QA 3RV1A 3DPOA 3VEBA 3OHXM 2QFFA 2JNKA 3DYTA 3F7WA 4JNFA 4PO2A 2OW6A 4IWPA 2C08A 3KAWA 1YWMA 4BNEA 4IM3A 2RAKA 2JNSA 2FICA 2YL6A 4R5KA 4FZSA 1E2UA 3DPQA 2YI9A 3QNIA 2Q12A 3BUQA 2QKWA 4R5JA 4R5GA 2X3VA 4JLCA 1LQ7A 2OW7A 4KIKB 3BUBA 3DX0A 4EZUA 2D4CA 3FD9A 1I49A 4R5IA 4JN4A 3DX1A 3UITA 4EZTA 2YIVX 3I2WA 3LMFA 3EJTA 3EJRA 4B9QA 3ER8C 4E81A 3DDFA 4HR1B 1OA1A 1HTYA 3C7NA 1QWNA 2EWFA 5C5BB 2WYIA 3HAJA 2FYVA 3D4ZA 4M0MA 4AZIA 3T46A 1O7DC 3D4YA 4EZXA 3SYVA 4IWOA 4ATMA 2OO2A 2YLAA 1QWUA 3D2EA 3Q84A 4EZYA 2RT6A 4F01A 2YI8A 5FIGA 2GAFD 1TQWA 4EZQA 3M3WA 3DX2A 2RAJA 1GNTA 3B52X 3SOGA 2EFLA 1W9MA 3KDRA 1I4TA 1Y2OA 3DX4A 4EZNA 1GNLA 4F00A 4JL9A 2PMRA 1R34A 4EZWA 1O7DB 2F1BA 3ER9B 2GF4A 2ND0A 1R33A 4JWDA 3O3OB 3EJUA 4H6HA 1ZWWA 2ZXQA 2F18A 2KHOA 2EFKA 3CZSA 3BUIA 5FLEX 5KBPA 2YIAA 2OBLA 4IW0A 4UDYX 3EJQA 3ZEDA 3DDGA 3BVWA 4DCNC 3HAHA 2X5CA 5E84A 4NSWA 3O3NB 1HXKA 3BLBA 1TQSA 2YL5A 3VKHA 1TQTA 2NCZA 3T4AG 4AZHA 4NQIA 2F7QA 3O3MB 3CAZA 1TQVA 2Z0NA 4FZOA 2RAIA 1E1DA 1WDZA 3G9GA 2D1LA 2YIBA 3BVXA 2YL9A 1I4DA 3L3OM 4AVMA 3KAVA 2EX3B 2X3XA 4EZSA 2WYHA 1ZYLA 3VEAA 4NPHA 4AKVA 1SU8A 4AZ6A 4D8JA 4IM2A 1R5EA 3QA8A 1MJGA 1UPXA 2LXYA 4H6IA 2QXLA 2PY6A 1E9VA 2F7RA 4AZBA 2OZNB 1HWWA 2F7OA 1URUA 1TQUA 4H8SA 1SUFA 2YKTA 1OA0A 2Z8YA 1QX1A 3LLLA 3ERCC 4JWCA 4AZCB 3I01A 3QNJA 3DPPA 1OAOA 4AZ5A 4AZCA 3RPMA 3D2FA 4AZGA 3CZNA 2YL8A 3ACOA 3BVUA 4JWIA 4UDXX 1X04A 3A98A 3PLTA 1X03A 2X3WA 2O0I1 4JWEA 3CVRA 3ABHA 2Z0VA 4EZRA 2Q13A 3T48A 4G6QA 4DYLA 3DX3A 2YLLA 4IWQA 3OK8A 4HY9A 2ELBA 3HAIA 4E3CA 3BUPA 4IM0A 2ND1A 3Q0KA 3LVTA 2F7PA 4EZPA 3T47A 1GN9A 3BUDA 4KIKA 3BVTA 4EZVA 3T49A 2LM0A 4FM3A 2MI7A 1DKZA 3L3PA 4HR1A 3OWGA 3D50A 1PS3A 1JQKA 5C5BA 4AZ7A 2V0OA 3B51X 3QWEA 1DKYA 3I39X 1U00A 3D51A 1SU6A 2Z0OA 3D52A 5TKYA 2F1AA 3EJPA 3GI7A 4EZOA 2GA9D 2ALWA 3RV0A 3B53X 2OBMA 3CV5A 4JNEA 3CKDA 4WPEA 3EJSA 1SU7A 4WPCA 1I4LA 3I04A 4R5LA 4FZPA 2WINM 4HYBA 4EZZA 3QE6A 2N3KA
chains in the Genus database with same CATH topology
1I4TA 1Y2OA 1ZWWA 2X3VA 3HAHA 1WDZA 3Q0KA 2C08A 4NSWA 3G9GA 5C5BB 3Q84A 3PLTA 1X03A 2D1LA 2D4CA 2X3WA 3HAJA 4I1QA 1I49A 4BNEA 1URUA 3ABHA 1I4DA 4WPEA 2EFKA 2Z0VA 2RAKA 2FICA 5C5BA 4WPCA 3I2WA 2V0OA 3QWEA 4H8SA 3M3WA 4FZSA 2YKTA 1I4LA 4AVMA 2RAJA 3QNIA 2Q13A 3ACOA 3LLLA 2X3XA 2Q12A 3SOGA 4DYLA 3SYVA 4NQIA 3CAZA 2EFLA 2Z0OA 2Z0NA 4ATMA 3OK8A 2ELBA 3HAIA 4DCNC 3DYTA 1X04A 3QE6A 2RAIA 4AKVA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1I4T A;  1Y2O A;  1ZWW A;  2X3V A;  3HAH A;  1WDZ A;  3Q0K A;  2C08 A;  4NSW A;  3G9G A;  5C5B B;  3Q84 A;  3PLT A;  1X03 A;  2D1L A;  2D4C A;  2X3W A;  3HAJ A;  4I1Q A;  1I49 A;  4BNE A;  1URU A;  3ABH A;  1I4D A;  4WPE A;  2EFK A;  2Z0V A;  2RAK A;  2FIC A;  5C5B A;  4WPC A;  3I2W A;  2V0O A;  3QWE A;  4H8S A;  3M3W A;  4FZS A;  2YKT A;  1I4L A;  4AVM A;  2RAJ A;  3QNI A;  2Q13 A;  3ACO A;  3LLL A;  2X3X A;  2Q12 A;  3SOG A;  4DYL A;  3SYV A;  4NQI A;  3CAZ A;  2EFL A;  2Z0O A;  2Z0N A;  4ATM A;  3OK8 A;  2ELB A;  3HAI A;  4DCN C;  3DYT A;  1X04 A;  3QE6 A;  2RAI A;  4AKV A; 
#chains in the Genus database with same CATH topology
 1DKX A;  3BVV A;  4I1Q A;  3RV1 A;  3DPO A;  3VEB A;  3OHX M;  2QFF A;  2JNK A;  3DYT A;  3F7W A;  4JNF A;  4PO2 A;  2OW6 A;  4IWP A;  2C08 A;  3KAW A;  1YWM A;  4BNE A;  4IM3 A;  2RAK A;  2JNS A;  2FIC A;  2YL6 A;  4R5K A;  4FZS A;  1E2U A;  3DPQ A;  2YI9 A;  3QNI A;  2Q12 A;  3BUQ A;  2QKW A;  4R5J A;  4R5G A;  2X3V A;  4JLC A;  1LQ7 A;  2OW7 A;  4KIK B;  3BUB A;  3DX0 A;  4EZU A;  2D4C A;  3FD9 A;  1I49 A;  4R5I A;  4JN4 A;  3DX1 A;  3UIT A;  4EZT A;  2YIV X;  3I2W A;  3LMF A;  3EJT A;  3EJR A;  4B9Q A;  3ER8 C;  4E81 A;  3DDF A;  4HR1 B;  1OA1 A;  1HTY A;  3C7N A;  1QWN A;  2EWF A;  5C5B B;  2WYI A;  3HAJ A;  2FYV A;  3D4Z A;  4M0M A;  4AZI A;  3T46 A;  1O7D C;  3D4Y A;  4EZX A;  3SYV A;  4IWO A;  4ATM A;  2OO2 A;  2YLA A;  1QWU A;  3D2E A;  3Q84 A;  4EZY A;  2RT6 A;  4F01 A;  2YI8 A;  5FIG A;  2GAF D;  1TQW A;  4EZQ A;  3M3W A;  3DX2 A;  2RAJ A;  1GNT A;  3B52 X;  3SOG A;  2EFL A;  1W9M A;  3KDR A;  1I4T A;  1Y2O A;  3DX4 A;  4EZN A;  1GNL A;  4F00 A;  4JL9 A;  2PMR A;  1R34 A;  4EZW A;  1O7D B;  2F1B A;  3ER9 B;  2GF4 A;  2ND0 A;  1R33 A;  4JWD A;  3O3O B;  3EJU A;  4H6H A;  1ZWW A;  2ZXQ A;  2F18 A;  2KHO A;  2EFK A;  3CZS A;  3BUI A;  5FLE X;  5KBP A;  2YIA A;  2OBL A;  4IW0 A;  4UDY X;  3EJQ A;  3ZED A;  3DDG A;  3BVW A;  4DCN C;  3HAH A;  2X5C A;  5E84 A;  4NSW A;  3O3N B;  1HXK A;  3BLB A;  1TQS A;  2YL5 A;  3VKH A;  1TQT A;  2NCZ A;  3T4A G;  4AZH A;  4NQI A;  2F7Q A;  3O3M B;  3CAZ A;  1TQV A;  2Z0N A;  4FZO A;  2RAI A;  1E1D A;  1WDZ A;  3G9G A;  2D1L A;  2YIB A;  3BVX A;  2YL9 A;  1I4D A;  3L3O M;  4AVM A;  3KAV A;  2EX3 B;  2X3X A;  4EZS A;  2WYH A;  1ZYL A;  3VEA A;  4NPH A;  4AKV A;  1SU8 A;  4AZ6 A;  4D8J A;  4IM2 A;  1R5E A;  3QA8 A;  1MJG A;  1UPX A;  2LXY A;  4H6I A;  2QXL A;  2PY6 A;  1E9V A;  2F7R A;  4AZB A;  2OZN B;  1HWW A;  2F7O A;  1URU A;  1TQU A;  4H8S A;  1SUF A;  2YKT A;  1OA0 A;  2Z8Y A;  1QX1 A;  3LLL A;  3ERC C;  4JWC A;  4AZC B;  3I01 A;  3QNJ A;  3DPP A;  1OAO A;  4AZ5 A;  4AZC A;  3RPM A;  3D2F A;  4AZG A;  3CZN A;  2YL8 A;  3ACO A;  3BVU A;  4JWI A;  4UDX X;  1X04 A;  3A98 A;  3PLT A;  1X03 A;  2X3W A;  2O0I 1;  4JWE A;  3CVR A;  3ABH A;  2Z0V A;  4EZR A;  2Q13 A;  3T48 A;  4G6Q A;  4DYL A;  3DX3 A;  2YLL A;  4IWQ A;  3OK8 A;  4HY9 A;  2ELB A;  3HAI A;  4E3C A;  3BUP A;  4IM0 A;  2ND1 A;  3Q0K A;  3LVT A;  2F7P A;  4EZP A;  3T47 A;  1GN9 A;  3BUD A;  4KIK A;  3BVT A;  4EZV A;  3T49 A;  2LM0 A;  4FM3 A;  2MI7 A;  1DKZ A;  3L3P A;  4HR1 A;  3OWG A;  3D50 A;  1PS3 A;  1JQK A;  5C5B A;  4AZ7 A;  2V0O A;  3B51 X;  3QWE A;  1DKY A;  3I39 X;  1U00 A;  3D51 A;  1SU6 A;  2Z0O A;  3D52 A;  5TKY A;  2F1A A;  3EJP A;  3GI7 A;  4EZO A;  2GA9 D;  2ALW A;  3RV0 A;  3B53 X;  2OBM A;  3CV5 A;  4JNE A;  3CKD A;  4WPE A;  3EJS A;  1SU7 A;  4WPC A;  1I4L A;  3I04 A;  4R5L A;  4FZP A;  2WIN M;  4HYB A;  4EZZ A;  3QE6 A;  2N3K A; 
#chains in the Genus database with same CATH homology
 1I4T A;  1Y2O A;  1ZWW A;  2X3V A;  3HAH A;  1WDZ A;  3Q0K A;  2C08 A;  4NSW A;  3G9G A;  5C5B B;  3Q84 A;  3PLT A;  1X03 A;  2D1L A;  2D4C A;  2X3W A;  3HAJ A;  4I1Q A;  1I49 A;  4BNE A;  1URU A;  3ABH A;  1I4D A;  4WPE A;  2EFK A;  2Z0V A;  2RAK A;  2FIC A;  5C5B A;  4WPC A;  3I2W A;  2V0O A;  3QWE A;  4H8S A;  3M3W A;  4FZS A;  2YKT A;  1I4L A;  4AVM A;  2RAJ A;  3QNI A;  2Q13 A;  3ACO A;  3LLL A;  2X3X A;  2Q12 A;  3SOG A;  4DYL A;  3SYV A;  4NQI A;  3CAZ A;  2EFL A;  2Z0O A;  2Z0N A;  4ATM A;  3OK8 A;  2ELB A;  3HAI A;  4DCN C;  3DYT A;  1X04 A;  3QE6 A;  2RAI A;  4AKV A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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