3NDQA

Structure of human tfiis domain ii
Total Genus 40
1020304050607080900510152025303540
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
40
sequence length
97
structure length
97
Chain Sequence
RAPSTSDSVRLKCREMLAAALRTGDDYIAIGADEEELGSQIEEAIYQEIRNTDMKYKNRVRSRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEM

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
molecule tags Transcription
source organism Homo sapiens
publication title Structure of Human TFIIS Domain II
rcsb
molecule keywords Transcription elongation factor A protein 1
total genus 40
structure length 97
sequence length 97
ec nomenclature
pdb deposition date 2010-06-07
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.472.30 Mainly Alpha Orthogonal Bundle Cyclin A; domain 1 Transcription elongation factor S-II, central domain 3ndqA00
1ENWA 3NDQA 2LW4A 2DMEA 4BY1X 4BY7X 3GTMS 4BXXX 3PO3S
chains in the Genus database with same CATH superfamily
3EOCB 1AISB 2DD4B 2IW9B 4IMYB 4CFMB 1FVVB 4YOSA 3A8LB 1OKVB 3QHRB 2PK2A 3TN8B 3DTOA 1C9BA 2BS2A 5EJCA 2W9FA 1UGRB 1XO2A 4YC3B 5EFQB 3WVDB 3GTMS 4CFUD 4BCMD 2C5VB 2EUFA 2CZ1B 3QXEB 1GH6B 2X1NB 5DQVA 3PO3S 2ZPGB 3BG5A 4CXAB 4EOQB 2WJ9A 1G3NC 1FKMA 1QMZB 2W9ZA 3HB9A 3QYHB 5ACBA 5CYIB 4NSTB 5LQFB 4BCHB 2IW8B 4BCFB 3QHWB 1VYWB 2WFYB 5HQ0B 5ICPB 3A8MB 4ROCA 2WMBB 2C6TB 4OB3B 2ZPHB 2QF7A 2BS4A 3HHTB 1QLBA 4JX4A 4YOOA 3EIDB 4HNVA 4JX6A 2UUEB 3BHTB 4BCGB 1OKWB 1H28B 4ZGDB 1URCB 2CZ6B 3HZJA 3BG3A 4BCQB 3A8GB 1JKWA 4M6VA 2QFZA 1JSTB 3QWLA 4YOZA 3MIAB 2F2CA 4F6UB 4F7NB 2UZDB 2LW4A 2WXVB 2DPPB 4AI6A 2DD5B 2IN3A 3VYGB 3G33B 4EOLB 1N4MA 3BLHB 4F6SB 1JOWA 1H24B 2V22B 3RGFB 1UNLD 1H1SB 2CJMB 2QDJA 4EOJB 2DXCB 1ENWA 1OIYB 1UNHD 4CFNB 1AHJB 4OGRB 4BBRM 4I3ZB 1E7PA 1OI9B 4CFVB 2QDYB 2C5XB 1W98B 4KRCB 5HBJB 3WVEB 4EOPB 3QZ9B 3VYHB 1ZP2A 2CZ7B 2DMEA 3HBLA 4BCQD 2KR6A 4F70B 4BCOB 3VKHA 5L2WB 1O9KA 2AHJB 3TNWB 3MY5B 3MY1B 5BNJB 5DQWA 2CCHB 4HL4A 4ZGJB 1H4LD 1O9KB 3H4CA 4BCJB 4AKIA 1OL2B 4AKGA 1BU2A 3BHVB 4KRDB 1H26B 2QQ8A 1V29B 2PK9B 3DJBA 4HNUA 3BLRB 4Z6YA 4BCNB 4MFEA 2ZPFB 1OIUB 2R7GA 3K7AM 4BBSM 4EOSB 3B57A 1TD6A 4BY7X 2DXBB 2IVXA 2UZEB 4FM4B 4BXXX 4F7LB 4UN0A 2ZCFB 3QYBA 3F5XB 4BY1X 4EONB 3X26B 1JSUB 1UGSB 4CFWB 4NC6A 3BLQB 1H1QB 4EC9B 4MIMA 1VINA 2G77A 4G6LB 3M03A 2WIHB 1UGPB 1H27B 1E9HB 2WMAB 4ELJA 2WHBB 2BKZB 2C5NB 4BCKB 5IDPB 1TFBA 2ZPBB 4ELLA 3EJ1B 1P5EB 1OL1B 2WPAB 2KMGA 1H1RB 3KHIA 2C5OB 3QYGB 3DDPB 4EOMB 4AKHA 4BCND 5IF1B 1AD6A 3QZ5B 2CYZB 3DL1A 3TNHB 2CZ0B 2WIPB 4EOOB 2PJQA 2UZBB 4OB0B 3TNIB 2W96A 2PMIB 5HBEB 3DOGB 4ZGEB 4JX5A 4F6WB 4OB2B 2G9XB 4EOKB 1KXUA 4HLQA 1PKDB 2BS3A 2B9RA 3HO8A 4HNTA 5I5ZB 3MI9B 3NDQA 3DDQB 1D3UB 5IDNB 5CEIB 4BCPB 3TW7A 2BPMB 4Y72B 4II5B 5HVYB 4QSHA 3X25B 5IHYA 1H25B 1UGQB 4EOIB 1IREB 2JGZB 5FGKB 4F7JB 5LMKB 2W99A 1VOLA 2W2HA 4OB1B 2D0QB 1FINB 1GUXA 2I40B 4OR5B 1GY3B 3TW6A 1GUXB 3VKGA 4CFUB 4BCMB 4TTHA 4RODA 2CCIB 4EORB 2ZPEB 4EC8B 1OGUB 4CFXB 4ROEA 4FX3B 4MFDA 3QYEA 3O0GD 3LQ5B 4BCIB 2WEVB 2IW6B 3X20B 3X28B 5HNBB 1F5QB 3BG9A 5HBHB 2ZPIB 2PHGA 3A8HB 1H1PB 3BHUB 1UNGD 2I53A 4LOCA 2ZZDB 4F7SB 2C4GB 2QGSA 2UZLB 4CRLB 3A8OB 3X24B 3POMA
chains in the Genus database with same CATH topology
1ENWA 3NDQA 2LW4A 2DMEA 4BY1X 4BY7X 3GTMS 4BXXX 3PO3S
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 1ENW A;  3NDQ A;  2LW4 A;  2DME A;  4BY1 X;  4BY7 X;  3GTM S;  4BXX X;  3PO3 S; 
#chains in the Genus database with same CATH topology
 3EOC B;  1AIS B;  2DD4 B;  2IW9 B;  4IMY B;  4CFM B;  1FVV B;  4YOS A;  3A8L B;  1OKV B;  3QHR B;  2PK2 A;  3TN8 B;  3DTO A;  1C9B A;  2BS2 A;  5EJC A;  2W9F A;  1UGR B;  1XO2 A;  4YC3 B;  5EFQ B;  3WVD B;  3GTM S;  4CFU D;  4BCM D;  2C5V B;  2EUF A;  2CZ1 B;  3QXE B;  1GH6 B;  2X1N B;  5DQV A;  3PO3 S;  2ZPG B;  3BG5 A;  4CXA B;  4EOQ B;  2WJ9 A;  1G3N C;  1FKM A;  1QMZ B;  2W9Z A;  3HB9 A;  3QYH B;  5ACB A;  5CYI B;  4NST B;  5LQF B;  4BCH B;  2IW8 B;  4BCF B;  3QHW B;  1VYW B;  2WFY B;  5HQ0 B;  5ICP B;  3A8M B;  4ROC A;  2WMB B;  2C6T B;  4OB3 B;  2ZPH B;  2QF7 A;  2BS4 A;  3HHT B;  1QLB A;  4JX4 A;  4YOO A;  3EID B;  4HNV A;  4JX6 A;  2UUE B;  3BHT B;  4BCG B;  1OKW B;  1H28 B;  4ZGD B;  1URC B;  2CZ6 B;  3HZJ A;  3BG3 A;  4BCQ B;  3A8G B;  1JKW A;  4M6V A;  2QFZ A;  1JST B;  3QWL A;  4YOZ A;  3MIA B;  2F2C A;  4F6U B;  4F7N B;  2UZD B;  2LW4 A;  2WXV B;  2DPP B;  4AI6 A;  2DD5 B;  2IN3 A;  3VYG B;  3G33 B;  4EOL B;  1N4M A;  3BLH B;  4F6S B;  1JOW A;  1H24 B;  2V22 B;  3RGF B;  1UNL D;  1H1S B;  2CJM B;  2QDJ A;  4EOJ B;  2DXC B;  1ENW A;  1OIY B;  1UNH D;  4CFN B;  1AHJ B;  4OGR B;  4BBR M;  4I3Z B;  1E7P A;  1OI9 B;  4CFV B;  2QDY B;  2C5X B;  1W98 B;  4KRC B;  5HBJ B;  3WVE B;  4EOP B;  3QZ9 B;  3VYH B;  1ZP2 A;  2CZ7 B;  2DME A;  3HBL A;  4BCQ D;  2KR6 A;  4F70 B;  4BCO B;  3VKH A;  5L2W B;  1O9K A;  2AHJ B;  3TNW B;  3MY5 B;  3MY1 B;  5BNJ B;  5DQW A;  2CCH B;  4HL4 A;  4ZGJ B;  1H4L D;  1O9K B;  3H4C A;  4BCJ B;  4AKI A;  1OL2 B;  4AKG A;  1BU2 A;  3BHV B;  4KRD B;  1H26 B;  2QQ8 A;  1V29 B;  2PK9 B;  3DJB A;  4HNU A;  3BLR B;  4Z6Y A;  4BCN B;  4MFE A;  2ZPF B;  1OIU B;  2R7G A;  3K7A M;  4BBS M;  4EOS B;  3B57 A;  1TD6 A;  4BY7 X;  2DXB B;  2IVX A;  2UZE B;  4FM4 B;  4BXX X;  4F7L B;  4UN0 A;  2ZCF B;  3QYB A;  3F5X B;  4BY1 X;  4EON B;  3X26 B;  1JSU B;  1UGS B;  4CFW B;  4NC6 A;  3BLQ B;  1H1Q B;  4EC9 B;  4MIM A;  1VIN A;  2G77 A;  4G6L B;  3M03 A;  2WIH B;  1UGP B;  1H27 B;  1E9H B;  2WMA B;  4ELJ A;  2WHB B;  2BKZ B;  2C5N B;  4BCK B;  5IDP B;  1TFB A;  2ZPB B;  4ELL A;  3EJ1 B;  1P5E B;  1OL1 B;  2WPA B;  2KMG A;  1H1R B;  3KHI A;  2C5O B;  3QYG B;  3DDP B;  4EOM B;  4AKH A;  4BCN D;  5IF1 B;  1AD6 A;  3QZ5 B;  2CYZ B;  3DL1 A;  3TNH B;  2CZ0 B;  2WIP B;  4EOO B;  2PJQ A;  2UZB B;  4OB0 B;  3TNI B;  2W96 A;  2PMI B;  5HBE B;  3DOG B;  4ZGE B;  4JX5 A;  4F6W B;  4OB2 B;  2G9X B;  4EOK B;  1KXU A;  4HLQ A;  1PKD B;  2BS3 A;  2B9R A;  3HO8 A;  4HNT A;  5I5Z B;  3MI9 B;  3NDQ A;  3DDQ B;  1D3U B;  5IDN B;  5CEI B;  4BCP B;  3TW7 A;  2BPM B;  4Y72 B;  4II5 B;  5HVY B;  4QSH A;  3X25 B;  5IHY A;  1H25 B;  1UGQ B;  4EOI B;  1IRE B;  2JGZ B;  5FGK B;  4F7J B;  5LMK B;  2W99 A;  1VOL A;  2W2H A;  4OB1 B;  2D0Q B;  1FIN B;  1GUX A;  2I40 B;  4OR5 B;  1GY3 B;  3TW6 A;  1GUX B;  3VKG A;  4CFU B;  4BCM B;  4TTH A;  4ROD A;  2CCI B;  4EOR B;  2ZPE B;  4EC8 B;  1OGU B;  4CFX B;  4ROE A;  4FX3 B;  4MFD A;  3QYE A;  3O0G D;  3LQ5 B;  4BCI B;  2WEV B;  2IW6 B;  3X20 B;  3X28 B;  5HNB B;  1F5Q B;  3BG9 A;  5HBH B;  2ZPI B;  2PHG A;  3A8H B;  1H1P B;  3BHU B;  1UNG D;  2I53 A;  4LOC A;  2ZZD B;  4F7S B;  2C4G B;  2QGS A;  2UZL B;  4CRL B;  3A8O B;  3X24 B;  3POM A; 
#chains in the Genus database with same CATH homology
 1ENW A;  3NDQ A;  2LW4 A;  2DME A;  4BY1 X;  4BY7 X;  3GTM S;  4BXX X;  3PO3 S;
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...
How to cite
Application loaded.