3OK8A

I-bar of pinkbar
Total Genus 104

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
104
sequence length
219
structure length
219
Chain Sequence
APEMDQFYRSTMAIYKSIMEQFNPALENLVYLGNNYLRAFHALSEAAEVYFSAIQKIGEQALQSSTSQILGEILVQMSDTQRHLNSDLEVVVQTFHGDLLQHMEKNTKLDMQFIKDSCQHYEIEYRHRAANLEKCMSELWRMERKRDKNAREMKESVNRLHAQMQAFVSESKRAAELEEKRRYRFLAEKHLLLSNTFLQFLGRARGMLQNRVLLWKEQS

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH2 (23-64)EMPTYTIV1 (65-68)AH3 (68-146)AH4 (150-216)AH1 (2-21)Updating...
connected with : NaN
molecule tags Protein binding
source organism Mus musculus
publication title Pinkbar is an epithelial-specific BAR domain protein that generates planar membrane structures.
pubmed doi rcsb
molecule keywords Brain-specific angiogenesis inhibitor 1-associated protein 2
total genus 104
structure length 219
sequence length 219
chains with identical sequence B
ec nomenclature
pdb deposition date 2010-08-24
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1270.60 Mainly Alpha Up-down Bundle Substrate Binding Domain Of Dnak; Chain:A; Domain 2 Arfaptin homology (AH) domain/BAR domain 3ok8A00
4FZSA 2RAKA 4WPEA 3Q0KA 4BNEA 3HAJA 4WPCA 4ATMA 2C08A 2Q13A 2FICA 2X3VA 2RAJA 1I49A 3QWEA 3QE6A 4DYLA 2RAIA 2EFKA 3ACOA 2D4CA 3DYTA 3PLTA 5C5BA 3HAHA 1ZWWA 2D1LA 2YKTA 3CAZA 4AVMA 1URUA 2Z0NA 2Z0OA 4AKVA 3LLLA 4H8SA 2EFLA 4NSWA 3SOGA 4DCNC 1I4DA 3I2WA 3OK8A 1Y2OA 2V0OA 4I1QA 3SYVA 3ABHA 1I4LA 3M3WA 3HAIA 3G9GA 1I4TA 1X04A 1X03A 5C5BB 1WDZA 4NQIA 3Q84A 2Z0VA 2X3XA 3QNIA 2ELBA 2X3WA 2Q12A
chains in the Genus database with same CATH superfamily
1JQKA 2F1AA 2FICA 2GF4A 4F01A 3QE6A 4EZUA 4UDXX 3DX1A 5KBPA 3B53X 4AKVA 1U00A 3D50A 4DCNC 2LM0A 4AZ7A 3RPMA 4R5KA 4AZIA 2F1BA 3T49A 1UPXA 3ZEDA 3DX2A 3CV5A 3I04A 3OHXM 1GN9A 2OW6A 4R5GA 3HAIA 1X04A 1DKZA 1MJGA 3C7NA 3BUBA 4BNEA 1QX1A 1QWUA 3DDGA 1SU6A 2F7PA 2YIVX 5FIGA 4PO2A 2EX3B 3KAVA 1URUA 4EZYA 1TQWA 4EZPA 4JN4A 5TKYA 3T46A 2GAFD 3I2WA 3FD9A 3L3PA 1GNLA 4JLCA 1R34A 4IM0A 2X3VA 1I49A 1SUFA 3D4YA 4JNFA 2ND1A 3DX3A 3DYTA 2D1LA 2Z0NA 4EZRA 4R5IA 2EFLA 2OW7A 3B52X 2ZXQA 3DPPA 4KIKA 3LVTA 4H6HA 4EZVA 2RT6A 3EJTA 3O3NB 1TQSA 4R5LA 3LLLA 1PS3A 1E9VA 3M3WA 3BUPA 4EZWA 3Q84A 4AZGA 2YIAA 4HY9A 2KHOA 2Q13A 3VEBA 1SU8A 1LQ7A 1OA1A 4FZPA 3BUIA 3T4AG 2D4CA 4IWQA 2YKTA 2OO2A 1Y2OA 2V0OA 4I1QA 3I39X 1I4TA 3EJPA 3D2EA 3EJSA 3EJQA 3VKHA 2RAKA 3BUDA 4WPCA 4IW0A 3BVVA 4AZCB 4DYLA 2RAIA 4AVMA 3DX4A 3QA8A 4H8SA 2PMRA 3EJUA 3G9GA 2YL9A 2N3KA 3RV1A 3Q0KA 2C08A 3RV0A 3DPQA 3CVRA 1YWMA 4KIKB 1HTYA 4EZTA 2EFKA 1TQTA 1I4DA 1WDZA 4AZCA 1QWNA 2Q12A 2MI7A 1R5EA 3VEAA 4IWOA 4JWIA 3T48A 2QXLA 2Z8YA 3HAHA 2JNKA 3OWGA 3GI7A 1X03A 1DKYA 4EZQA 2EWFA 1HWWA 3B51X 1R33A 2F7OA 2YI9A 4ATMA 4HYBA 2YLLA 2JNSA 4JL9A 3KDRA 3D4ZA 4UDYX 4G6QA 3EJRA 2WYIA 5C5BB 4AZHA 2YLAA 4E3CA 2RAJA 4EZSA 3F7WA 3PLTA 3BLBA 4AZ5A 3SOGA 4H6IA 2YL6A 2X3XA 1TQUA 4AZ6A 2F7QA 2OBLA 4JNEA 3KAWA 4NPHA 1O7DB 4M0MA 3T47A 5C5BA 4JWCA 3BUQA 1I4LA 3ERCC 3D52A 4IWPA 2Z0VA 1E1DA 4FZSA 1OAOA 4WPEA 3O3MB 4E81A 3A98A 2YL5A 4EZZA 4HR1B 1E2UA 3ACOA 3DDFA 3O3OB 3CAZA 3BVUA 2ALWA 1OA0A 2YI8A 1GNTA 2WYHA 4EZXA 2LXYA 2QFFA 3DPOA 3BVWA 4FZOA 2YIBA 3HAJA 1SU7A 3BVTA 4B9QA 3QWEA 3CZNA 4EZNA 4AZBA 3ER8C 2PY6A 1ZWWA 3SYVA 2GA9D 3QNIA 4IM2A 4EZOA 4HR1A 5E84A 4F00A 1HXKA 3ER9B 3LMFA 4R5JA 2F7RA 4JWDA 2OBMA 2NCZA 5FLEX 4FM3A 4NSWA 3OK8A 1W9MA 2OZNB 2QKWA 3UITA 2WINM 1ZYLA 2O0I1 3L3OM 2ELBA 4IM3A 1TQVA 3CZSA 2ND0A 4D8JA 2FYVA 3I01A 3D2FA 2X5CA 2YL8A 2F18A 2Z0OA 3QNJA 4JWEA 1DKXA 3D51A 3BVXA 3ABHA 3DX0A 4NQIA 3CKDA 1O7DC 2X3WA
chains in the Genus database with same CATH topology
4FZSA 2RAKA 4WPEA 3Q0KA 4BNEA 3HAJA 4WPCA 4ATMA 2C08A 2Q13A 2FICA 2X3VA 2RAJA 1I49A 3QWEA 3QE6A 4DYLA 2RAIA 2EFKA 3ACOA 2D4CA 3DYTA 3PLTA 5C5BA 3HAHA 1ZWWA 2D1LA 2YKTA 3CAZA 4AVMA 1URUA 2Z0NA 2Z0OA 4AKVA 3LLLA 4H8SA 2EFLA 4NSWA 3SOGA 4DCNC 1I4DA 3I2WA 3OK8A 1Y2OA 2V0OA 4I1QA 3SYVA 3ABHA 1I4LA 3M3WA 3HAIA 3G9GA 1I4TA 1X04A 1X03A 5C5BB 1WDZA 4NQIA 3Q84A 2Z0VA 2X3XA 3QNIA 2ELBA 2X3WA 2Q12A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4FZS A;  2RAK A;  4WPE A;  3Q0K A;  4BNE A;  3HAJ A;  4WPC A;  4ATM A;  2C08 A;  2Q13 A;  2FIC A;  2X3V A;  2RAJ A;  1I49 A;  3QWE A;  3QE6 A;  4DYL A;  2RAI A;  2EFK A;  3ACO A;  2D4C A;  3DYT A;  3PLT A;  5C5B A;  3HAH A;  1ZWW A;  2D1L A;  2YKT A;  3CAZ A;  4AVM A;  1URU A;  2Z0N A;  2Z0O A;  4AKV A;  3LLL A;  4H8S A;  2EFL A;  4NSW A;  3SOG A;  4DCN C;  1I4D A;  3I2W A;  3OK8 A;  1Y2O A;  2V0O A;  4I1Q A;  3SYV A;  3ABH A;  1I4L A;  3M3W A;  3HAI A;  3G9G A;  1I4T A;  1X04 A;  1X03 A;  5C5B B;  1WDZ A;  4NQI A;  3Q84 A;  2Z0V A;  2X3X A;  3QNI A;  2ELB A;  2X3W A;  2Q12 A; 
#chains in the Genus database with same CATH topology
 1JQK A;  2F1A A;  2FIC A;  2GF4 A;  4F01 A;  3QE6 A;  4EZU A;  4UDX X;  3DX1 A;  5KBP A;  3B53 X;  4AKV A;  1U00 A;  3D50 A;  4DCN C;  2LM0 A;  4AZ7 A;  3RPM A;  4R5K A;  4AZI A;  2F1B A;  3T49 A;  1UPX A;  3ZED A;  3DX2 A;  3CV5 A;  3I04 A;  3OHX M;  1GN9 A;  2OW6 A;  4R5G A;  3HAI A;  1X04 A;  1DKZ A;  1MJG A;  3C7N A;  3BUB A;  4BNE A;  1QX1 A;  1QWU A;  3DDG A;  1SU6 A;  2F7P A;  2YIV X;  5FIG A;  4PO2 A;  2EX3 B;  3KAV A;  1URU A;  4EZY A;  1TQW A;  4EZP A;  4JN4 A;  5TKY A;  3T46 A;  2GAF D;  3I2W A;  3FD9 A;  3L3P A;  1GNL A;  4JLC A;  1R34 A;  4IM0 A;  2X3V A;  1I49 A;  1SUF A;  3D4Y A;  4JNF A;  2ND1 A;  3DX3 A;  3DYT A;  2D1L A;  2Z0N A;  4EZR A;  4R5I A;  2EFL A;  2OW7 A;  3B52 X;  2ZXQ A;  3DPP A;  4KIK A;  3LVT A;  4H6H A;  4EZV A;  2RT6 A;  3EJT A;  3O3N B;  1TQS A;  4R5L A;  3LLL A;  1PS3 A;  1E9V A;  3M3W A;  3BUP A;  4EZW A;  3Q84 A;  4AZG A;  2YIA A;  4HY9 A;  2KHO A;  2Q13 A;  3VEB A;  1SU8 A;  1LQ7 A;  1OA1 A;  4FZP A;  3BUI A;  3T4A G;  2D4C A;  4IWQ A;  2YKT A;  2OO2 A;  1Y2O A;  2V0O A;  4I1Q A;  3I39 X;  1I4T A;  3EJP A;  3D2E A;  3EJS A;  3EJQ A;  3VKH A;  2RAK A;  3BUD A;  4WPC A;  4IW0 A;  3BVV A;  4AZC B;  4DYL A;  2RAI A;  4AVM A;  3DX4 A;  3QA8 A;  4H8S A;  2PMR A;  3EJU A;  3G9G A;  2YL9 A;  2N3K A;  3RV1 A;  3Q0K A;  2C08 A;  3RV0 A;  3DPQ A;  3CVR A;  1YWM A;  4KIK B;  1HTY A;  4EZT A;  2EFK A;  1TQT A;  1I4D A;  1WDZ A;  4AZC A;  1QWN A;  2Q12 A;  2MI7 A;  1R5E A;  3VEA A;  4IWO A;  4JWI A;  3T48 A;  2QXL A;  2Z8Y A;  3HAH A;  2JNK A;  3OWG A;  3GI7 A;  1X03 A;  1DKY A;  4EZQ A;  2EWF A;  1HWW A;  3B51 X;  1R33 A;  2F7O A;  2YI9 A;  4ATM A;  4HYB A;  2YLL A;  2JNS A;  4JL9 A;  3KDR A;  3D4Z A;  4UDY X;  4G6Q A;  3EJR A;  2WYI A;  5C5B B;  4AZH A;  2YLA A;  4E3C A;  2RAJ A;  4EZS A;  3F7W A;  3PLT A;  3BLB A;  4AZ5 A;  3SOG A;  4H6I A;  2YL6 A;  2X3X A;  1TQU A;  4AZ6 A;  2F7Q A;  2OBL A;  4JNE A;  3KAW A;  4NPH A;  1O7D B;  4M0M A;  3T47 A;  5C5B A;  4JWC A;  3BUQ A;  1I4L A;  3ERC C;  3D52 A;  4IWP A;  2Z0V A;  1E1D A;  4FZS A;  1OAO A;  4WPE A;  3O3M B;  4E81 A;  3A98 A;  2YL5 A;  4EZZ A;  4HR1 B;  1E2U A;  3ACO A;  3DDF A;  3O3O B;  3CAZ A;  3BVU A;  2ALW A;  1OA0 A;  2YI8 A;  1GNT A;  2WYH A;  4EZX A;  2LXY A;  2QFF A;  3DPO A;  3BVW A;  4FZO A;  2YIB A;  3HAJ A;  1SU7 A;  3BVT A;  4B9Q A;  3QWE A;  3CZN A;  4EZN A;  4AZB A;  3ER8 C;  2PY6 A;  1ZWW A;  3SYV A;  2GA9 D;  3QNI A;  4IM2 A;  4EZO A;  4HR1 A;  5E84 A;  4F00 A;  1HXK A;  3ER9 B;  3LMF A;  4R5J A;  2F7R A;  4JWD A;  2OBM A;  2NCZ A;  5FLE X;  4FM3 A;  4NSW A;  3OK8 A;  1W9M A;  2OZN B;  2QKW A;  3UIT A;  2WIN M;  1ZYL A;  2O0I 1;  3L3O M;  2ELB A;  4IM3 A;  1TQV A;  3CZS A;  2ND0 A;  4D8J A;  2FYV A;  3I01 A;  3D2F A;  2X5C A;  2YL8 A;  2F18 A;  2Z0O A;  3QNJ A;  4JWE A;  1DKX A;  3D51 A;  3BVX A;  3ABH A;  3DX0 A;  4NQI A;  3CKD A;  1O7D C;  2X3W A; 
#chains in the Genus database with same CATH homology
 4FZS A;  2RAK A;  4WPE A;  3Q0K A;  4BNE A;  3HAJ A;  4WPC A;  4ATM A;  2C08 A;  2Q13 A;  2FIC A;  2X3V A;  2RAJ A;  1I49 A;  3QWE A;  3QE6 A;  4DYL A;  2RAI A;  2EFK A;  3ACO A;  2D4C A;  3DYT A;  3PLT A;  5C5B A;  3HAH A;  1ZWW A;  2D1L A;  2YKT A;  3CAZ A;  4AVM A;  1URU A;  2Z0N A;  2Z0O A;  4AKV A;  3LLL A;  4H8S A;  2EFL A;  4NSW A;  3SOG A;  4DCN C;  1I4D A;  3I2W A;  3OK8 A;  1Y2O A;  2V0O A;  4I1Q A;  3SYV A;  3ABH A;  1I4L A;  3M3W A;  3HAI A;  3G9G A;  1I4T A;  1X04 A;  1X03 A;  5C5B B;  1WDZ A;  4NQI A;  3Q84 A;  2Z0V A;  2X3X A;  3QNI A;  2ELB A;  2X3W A;  2Q12 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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