3PLT | Genus

Total Genus 90

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	90
sequence length	214
structure length	214
Chain Sequence	GPELARKLSQLVKTEKGVLRAMEVVASERREAAKQLSLWGADNDDDVSDVTDKLGVLIYELGELQDQFIDKYDQYRVTLKSIRNIEASVQPSRDRKEKITDEIAHLKYKDPQSTKIPVLEQELVRAEAESLVAEAQLSNITREKLKAAYSYMFDSLRELSEKFALIAGYGKALLELLDDSPVTPGEARPAYDGYEASRQIIMDAESALESWTLD

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Structural protein
source organism	Saccharomyces cerevisiae
publication title	Eisosome-driven plasma membrane organization is mediated by BAR domains. pubmed doi rcsb
molecule keywords	Sphingolipid long chain base-responsive protein LSP1
total genus	90
structure length	214
sequence length	214
chains with identical sequence	B, C
ec nomenclature
pdb deposition date	2010-11-15

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.20.1270.60	Mainly Alpha	Up-down Bundle	Substrate Binding Domain Of Dnak; Chain:A; Domain 2	Arfaptin homology (AH) domain/BAR domain	3pltA00

2RAIA 4H8SA 4DYLA 4ATMA 3QNIA 2RAKA 3M3WA 2EFLA 1Y2OA 4BNEA 1I4LA 4AKVA 4I1QA 3I2WA 2EFKA 1I4DA 2C08A 2X3WA 3ABHA 3HAIA 3HAJA 4DCNC 4AVMA 3DYTA 1I4TA 2Z0OA 3Q84A 4FZSA 3QWEA 2YKTA 3SOGA 2X3VA 3HAHA 3Q0KA 4WPCA 2FICA 2V0OA 2Q12A 1X04A 2Z0NA 2ELBA 2Z0VA 4NSWA 3QE6A 2X3XA 3SYVA 2D4CA 2Q13A 1WDZA 3LLLA 5C5BB 3OK8A 2RAJA 5C5BA 3CAZA 3G9GA 1URUA 4WPEA 3PLTA 3ACOA 2D1LA 1ZWWA 4NQIA 1I49A 1X03A
chains in the Genus database with same CATH superfamily

3DX1A 3T4AG 4AKVA 1I4DA 3VEAA 2GAFD 2QKWA 3SOGA 2X3VA 3Q0KA 2Q12A 1X04A 4NSWA 3BLBA 4EZSA 4HR1A 3D2FA 3DPOA 4JWIA 2WINM 1QWNA 4M0MA 4JWEA 3BUQA 1ZWWA 4DCNC 4JWDA 1SU7A 3I01A 2EFLA 4I1QA 3FD9A 4IM0A 1R5EA 2F7OA 2Q13A 2RAJA 3B52X 3BUDA 2GF4A 1YWMA 3BUPA 3T48A 2OBMA 2ND0A 1O7DB 3EJQA 1UPXA 2OO2A 4AVMA 3ERCC 4EZTA 5FIGA 4F00A 3ER9B 1GNTA 3PLTA 3ACOA 1LQ7A 1X03A 3BVVA 3DX2A 3CZSA 3O3NB 3QWEA 2Z0NA 1QWUA 4HR1B 5KBPA 2RT6A 1E2UA 4AZHA 2YL8A 3L3OM 1I49A 2F1BA 3T46A 2OBLA 3HAIA 4JN4A 3DYTA 1TQTA 1TQSA 2V0OA 4JWCA 5E84A 1SU8A 1WDZA 2YIVX 5TKYA 3G9GA 4UDYX 3T47A 3D50A 4IW0A 3KAWA 3M3WA 1Y2OA 2WYHA 3CKDA 4IWQA 1HTYA 4KIKB 1R34A 2Z0OA 4JL9A 3DX4A 3RPMA 3LLLA 3KDRA 4AZBA 2KHOA 4AZ5A 4R5KA 3LVTA 3QNIA 2F1AA 4FZPA 1E9VA 2LM0A 2C08A 4F01A 1U00A 2YI8A 2YIAA 4JNFA 3T49A 3HAHA 4R5GA 4EZZA 1OA0A 1GN9A 3EJSA 3DPPA 4EZRA 1GNLA 2RAIA 3O3OB 4G6QA 4BNEA 2GA9D 3HAJA 1I4TA 1QX1A 4EZXA 4EZYA 3EJUA 2X3XA 3OWGA 3DX3A 2EX3B 1HWWA 3RV1A 3O3MB 4E81A 4HY9A 2NCZA 3I2WA 3BVTA 4D8JA 2YKTA 4PO2A 4AZCA 1O7DC 2Z0VA 3C7NA 3ZEDA 1DKXA 3BVUA 5C5BA 3DDGA 1W9MA 1SUFA 1TQWA 2F18A 3LMFA 3ER8C 3I04A 1OA1A 4H6IA 4R5JA 4JLCA 4FZOA 2ELBA 2YLLA 4AZ6A 1DKZA 3QE6A 2D4CA 4IM3A 4EZPA 2YL5A 4JNEA 4UDXX 2OW6A 3CZNA 1URUA 2PMRA 3BUIA 3D2EA 4DYLA 4AZGA 4EZNA 2RAKA 4HYBA 4EZUA 4IM2A 3I39X 3QA8A 3OHXM 3EJRA 3EJPA 2EWFA 2QXLA 3SYVA 4E3CA 3VKHA 4R5IA 1OAOA 2QFFA 2F7PA 2PY6A 3BVWA 4NPHA 2F7RA 4AZCB 3KAVA 4FM3A 5C5BB 2Z8YA 2JNKA 4WPEA 3D4YA 1PS3A 4H8SA 4IWPA 2YL6A 2X3WA 2OW7A 3EJTA 4FZSA 5FLEX 1SU6A 3DX0A 3UITA 3A98A 2X5CA 2O0I1 3OK8A 2WYIA 3D51A 2YLAA 1HXKA 2D1LA 4EZVA 3QNJA 4H6HA 3BVXA 3B53X 2EFKA 4KIKA 1TQVA 2LXYA 2ALWA 3DPQA 1DKYA 4AZIA 2MI7A 2ZXQA 4R5LA 3CV5A 4AZ7A 3RV0A 4B9QA 3D4ZA 3CVRA 2ND1A 2JNSA 4EZQA 1TQUA 1I4LA 3F7WA 2N3KA 2FYVA 2FICA 3L3PA 2YIBA 1R33A 2YI9A 3VEBA 4ATMA 1ZYLA 2F7QA 3ABHA 3GI7A 4EZWA 2OZNB 3Q84A 4WPCA 3DDFA 1JQKA 3D52A 3BUBA 3B51X 2YL9A 4IWOA 1MJGA 3CAZA 1E1DA 4EZOA 4NQIA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 2RAI A;  4H8S A;  4DYL A;  4ATM A;  3QNI A;  2RAK A;  3M3W A;  2EFL A;  1Y2O A;  4BNE A;  1I4L A;  4AKV A;  4I1Q A;  3I2W A;  2EFK A;  1I4D A;  2C08 A;  2X3W A;  3ABH A;  3HAI A;  3HAJ A;  4DCN C;  4AVM A;  3DYT A;  1I4T A;  2Z0O A;  3Q84 A;  4FZS A;  3QWE A;  2YKT A;  3SOG A;  2X3V A;  3HAH A;  3Q0K A;  4WPC A;  2FIC A;  2V0O A;  2Q12 A;  1X04 A;  2Z0N A;  2ELB A;  2Z0V A;  4NSW A;  3QE6 A;  2X3X A;  3SYV A;  2D4C A;  2Q13 A;  1WDZ A;  3LLL A;  5C5B B;  3OK8 A;  2RAJ A;  5C5B A;  3CAZ A;  3G9G A;  1URU A;  4WPE A;  3PLT A;  3ACO A;  2D1L A;  1ZWW A;  4NQI A;  1I49 A;  1X03 A; 
#chains in the Genus database with same CATH topology
 3DX1 A;  3T4A G;  4AKV A;  1I4D A;  3VEA A;  2GAF D;  2QKW A;  3SOG A;  2X3V A;  3Q0K A;  2Q12 A;  1X04 A;  4NSW A;  3BLB A;  4EZS A;  4HR1 A;  3D2F A;  3DPO A;  4JWI A;  2WIN M;  1QWN A;  4M0M A;  4JWE A;  3BUQ A;  1ZWW A;  4DCN C;  4JWD A;  1SU7 A;  3I01 A;  2EFL A;  4I1Q A;  3FD9 A;  4IM0 A;  1R5E A;  2F7O A;  2Q13 A;  2RAJ A;  3B52 X;  3BUD A;  2GF4 A;  1YWM A;  3BUP A;  3T48 A;  2OBM A;  2ND0 A;  1O7D B;  3EJQ A;  1UPX A;  2OO2 A;  4AVM A;  3ERC C;  4EZT A;  5FIG A;  4F00 A;  3ER9 B;  1GNT A;  3PLT A;  3ACO A;  1LQ7 A;  1X03 A;  3BVV A;  3DX2 A;  3CZS A;  3O3N B;  3QWE A;  2Z0N A;  1QWU A;  4HR1 B;  5KBP A;  2RT6 A;  1E2U A;  4AZH A;  2YL8 A;  3L3O M;  1I49 A;  2F1B A;  3T46 A;  2OBL A;  3HAI A;  4JN4 A;  3DYT A;  1TQT A;  1TQS A;  2V0O A;  4JWC A;  5E84 A;  1SU8 A;  1WDZ A;  2YIV X;  5TKY A;  3G9G A;  4UDY X;  3T47 A;  3D50 A;  4IW0 A;  3KAW A;  3M3W A;  1Y2O A;  2WYH A;  3CKD A;  4IWQ A;  1HTY A;  4KIK B;  1R34 A;  2Z0O A;  4JL9 A;  3DX4 A;  3RPM A;  3LLL A;  3KDR A;  4AZB A;  2KHO A;  4AZ5 A;  4R5K A;  3LVT A;  3QNI A;  2F1A A;  4FZP A;  1E9V A;  2LM0 A;  2C08 A;  4F01 A;  1U00 A;  2YI8 A;  2YIA A;  4JNF A;  3T49 A;  3HAH A;  4R5G A;  4EZZ A;  1OA0 A;  1GN9 A;  3EJS A;  3DPP A;  4EZR A;  1GNL A;  2RAI A;  3O3O B;  4G6Q A;  4BNE A;  2GA9 D;  3HAJ A;  1I4T A;  1QX1 A;  4EZX A;  4EZY A;  3EJU A;  2X3X A;  3OWG A;  3DX3 A;  2EX3 B;  1HWW A;  3RV1 A;  3O3M B;  4E81 A;  4HY9 A;  2NCZ A;  3I2W A;  3BVT A;  4D8J A;  2YKT A;  4PO2 A;  4AZC A;  1O7D C;  2Z0V A;  3C7N A;  3ZED A;  1DKX A;  3BVU A;  5C5B A;  3DDG A;  1W9M A;  1SUF A;  1TQW A;  2F18 A;  3LMF A;  3ER8 C;  3I04 A;  1OA1 A;  4H6I A;  4R5J A;  4JLC A;  4FZO A;  2ELB A;  2YLL A;  4AZ6 A;  1DKZ A;  3QE6 A;  2D4C A;  4IM3 A;  4EZP A;  2YL5 A;  4JNE A;  4UDX X;  2OW6 A;  3CZN A;  1URU A;  2PMR A;  3BUI A;  3D2E A;  4DYL A;  4AZG A;  4EZN A;  2RAK A;  4HYB A;  4EZU A;  4IM2 A;  3I39 X;  3QA8 A;  3OHX M;  3EJR A;  3EJP A;  2EWF A;  2QXL A;  3SYV A;  4E3C A;  3VKH A;  4R5I A;  1OAO A;  2QFF A;  2F7P A;  2PY6 A;  3BVW A;  4NPH A;  2F7R A;  4AZC B;  3KAV A;  4FM3 A;  5C5B B;  2Z8Y A;  2JNK A;  4WPE A;  3D4Y A;  1PS3 A;  4H8S A;  4IWP A;  2YL6 A;  2X3W A;  2OW7 A;  3EJT A;  4FZS A;  5FLE X;  1SU6 A;  3DX0 A;  3UIT A;  3A98 A;  2X5C A;  2O0I 1;  3OK8 A;  2WYI A;  3D51 A;  2YLA A;  1HXK A;  2D1L A;  4EZV A;  3QNJ A;  4H6H A;  3BVX A;  3B53 X;  2EFK A;  4KIK A;  1TQV A;  2LXY A;  2ALW A;  3DPQ A;  1DKY A;  4AZI A;  2MI7 A;  2ZXQ A;  4R5L A;  3CV5 A;  4AZ7 A;  3RV0 A;  4B9Q A;  3D4Z A;  3CVR A;  2ND1 A;  2JNS A;  4EZQ A;  1TQU A;  1I4L A;  3F7W A;  2N3K A;  2FYV A;  2FIC A;  3L3P A;  2YIB A;  1R33 A;  2YI9 A;  3VEB A;  4ATM A;  1ZYL A;  2F7Q A;  3ABH A;  3GI7 A;  4EZW A;  2OZN B;  3Q84 A;  4WPC A;  3DDF A;  1JQK A;  3D52 A;  3BUB A;  3B51 X;  2YL9 A;  4IWO A;  1MJG A;  3CAZ A;  1E1D A;  4EZO A;  4NQI A; 
#chains in the Genus database with same CATH homology
 2RAI A;  4H8S A;  4DYL A;  4ATM A;  3QNI A;  2RAK A;  3M3W A;  2EFL A;  1Y2O A;  4BNE A;  1I4L A;  4AKV A;  4I1Q A;  3I2W A;  2EFK A;  1I4D A;  2C08 A;  2X3W A;  3ABH A;  3HAI A;  3HAJ A;  4DCN C;  4AVM A;  3DYT A;  1I4T A;  2Z0O A;  3Q84 A;  4FZS A;  3QWE A;  2YKT A;  3SOG A;  2X3V A;  3HAH A;  3Q0K A;  4WPC A;  2FIC A;  2V0O A;  2Q12 A;  1X04 A;  2Z0N A;  2ELB A;  2Z0V A;  4NSW A;  3QE6 A;  2X3X A;  3SYV A;  2D4C A;  2Q13 A;  1WDZ A;  3LLL A;  5C5B B;  3OK8 A;  2RAJ A;  5C5B A;  3CAZ A;  3G9G A;  1URU A;  4WPE A;  3PLT A;  3ACO A;  2D1L A;  1ZWW A;  4NQI A;  1I49 A;  1X03 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3PLTA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN