3Q0KA

Crystal structure of human pacsin 2 f-bar
Total Genus 113

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
113
sequence length
289
structure length
287
Chain Sequence
DSFWEVGNYKRTVKRIDDGHRLCSDLMNCLHERARIEKAYAQQLTEWARRWRQLVEKGPQYGTVEKAWMAFMSEAERVSELHLEVKASLMNDDFEKIKNWQKEAFHKQMMGGFKETKEAEDGFRKAQKPWAKKLKEVEAAKKAHHAACKEEKLAISREANSKAPSLNPEQLKKLQDKIEKCKQDVLKTKEKYEKSLKELDQGTPQYMENMEQVFEQCQQFEEKRLRFFREVLLEVQKHLDLSNVAGYKAIYHDLEQSIRAADAVEDLRWFRANHGPGMAMNWPQEEW

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (25-73)TI1 (18-21)AH2 (79-120)TII1 (21-24)TII2 (124-127)AH4 (185-256)AH3 (130-175)TIV2 (176-179)EMPTYTIV3 (178-182)TIV4 (257-260)TI2 (258-261)AH5 (262-277)TIV1 (175-178)Updating...
connected with : NaN
molecule tags Endocytosis
source organism Homo sapiens
publication title Crystal structure of human PACSIN 2 F-BAR domain
rcsb
molecule keywords Protein kinase C and casein kinase substrate in neurons prot
total genus 113
structure length 287
sequence length 289
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2010-12-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00611 FCH Fes/CIP4, and EFC/F-BAR homology domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1270.60 Mainly Alpha Up-down Bundle Substrate Binding Domain Of Dnak; Chain:A; Domain 2 Arfaptin homology (AH) domain/BAR domain 3q0kA01
3QNIA 4AVMA 4AKVA 3PLTA 2YKTA 2RAKA 5C5BA 1X04A 2Z0OA 3HAIA 3SYVA 4NSWA 1I4DA 2X3WA 3ABHA 4DCNC 3I2WA 4WPEA 3HAHA 1WDZA 4NQIA 2FICA 1Y2OA 2D1LA 2RAJA 3Q0KA 2RAIA 4BNEA 2D4CA 3LLLA 2EFKA 3QE6A 1I49A 2X3VA 3ACOA 1X03A 2C08A 2EFLA 4ATMA 2Z0VA 3Q84A 1I4LA 1I4TA 3SOGA 4DYLA 2V0OA 3OK8A 3QWEA 2Z0NA 3HAJA 2Q12A 3G9GA 5C5BB 4FZSA 2ELBA 2X3XA 4I1QA 4WPCA 1ZWWA 1URUA 2Q13A 4H8SA 3CAZA 3DYTA 3M3WA
chains in the Genus database with same CATH superfamily
3QNIA 2LM0A 4AVMA 2JNSA 3VEAA 3ERCC 4EZVA 3DDFA 2F7QA 2N3KA 4UDYX 2FICA 3ACOA 3T49A 4ATMA 2X3XA 4IM2A 1YWMA 4JWDA 1URUA 1U00A 3CVRA 1OA0A 3D51A 3SYVA 4IWOA 4F00A 4WPEA 4EZXA 1WDZA 3B52X 3D2EA 1UPXA 3I04A 1E2UA 2C08A 2O0I1 1E9VA 2Z0NA 2ZXQA 2ND1A 3DPPA 2MI7A 4JLCA 3RV1A 4NPHA 4E81A 2F1BA 1GNLA 1X04A 2YIVX 2X3WA 1TQSA 2YL6A 3O3NB 3LLLA 2X5CA 3QE6A 3DPQA 2PMRA 2YLAA 4R5LA 2F7PA 3QWEA 4PO2A 3CZSA 2Q12A 4G6QA 3EJQA 3BUBA 1SUFA 2F1AA 4B9QA 1TQTA 3EJUA 3BUQA 4HR1A 3GI7A 2RAIA 1X03A 4DYLA 4IW0A 3EJSA 4JNFA 3ZEDA 4JNEA 4HR1B 1SU8A 3RPMA 3ER9B 2YLLA 1TQVA 4JWCA 3F7WA 1Y2OA 4EZWA 3CZNA 3OK8A 5KBPA 2OBMA 4FM3A 4H8SA 1R5EA 1SU7A 4R5GA 1HTYA 3BVXA 1DKZA 1QX1A 5TKYA 3Q84A 4EZOA 2OBLA 1JQKA 3O3MB 2NCZA 2GA9D 2Q13A 3T47A 2ALWA 3DX2A 4AKVA 1OA1A 2RAKA 2PY6A 2QFFA 4DCNC 3EJTA 4R5IA 4IWQA 3L3OM 2WINM 2RT6A 4HYBA 4AZ7A 3VKHA 1GNTA 3G9GA 4I1QA 2YIAA 3B51X 3KAVA 3A98A 3BVUA 5FLEX 3HAIA 2GAFD 4IWPA 3HAHA 1TQWA 2Z0VA 2QKWA 3DX4A 3RV0A 2ELBA 3BVTA 3DX1A 4EZQA 3BLBA 4EZPA 3CKDA 2EFKA 1R33A 3B53X 4H6HA 2X3VA 4E3CA 4IM3A 3DX0A 3CAZA 2WYIA 4EZTA 4HY9A 3EJPA 2Z0OA 1DKXA 3DPOA 3KAWA 1LQ7A 1SU6A 2D1LA 3BVWA 3QNJA 3LMFA 3DX3A 1TQUA 5FIGA 3QA8A 4EZRA 2F18A 4UDXX 4AZCA 4AZHA 2OO2A 4EZNA 2FYVA 3BVVA 3T48A 2YL8A 3CV5A 4FZOA 4NQIA 1PS3A 2KHOA 3OWGA 3Q0KA 4JWEA 4AZCB 2EX3B 4AZGA 2V0OA 4EZUA 3T46A 3UITA 1HXKA 2YKTA 3OHXM 2YI9A 4H6IA 2YI8A 3ER8C 1DKYA 2LXYA 4EZZA 2WYHA 4AZIA 3I39X 2D4CA 4R5KA 3D4ZA 2EFLA 2OZNB 2OW7A 3HAJA 4KIKA 1HWWA 4FZSA 4F01A 4IM0A 4AZBA 2YL5A 3M3WA 4NSWA 5E84A 4KIKB 2EWFA 2RAJA 4JWIA 4BNEA 1E1DA 3T4AG 3SOGA 1OAOA 1O7DB 2QXLA 2YL9A 2JNKA 4EZYA 1O7DC 1GN9A 3BUPA 1QWNA 2F7OA 3BUDA 3ABHA 2OW6A 4EZSA 1MJGA 1ZYLA 4R5JA 1I4LA 3I01A 3O3OB 3DYTA 3C7NA 4AZ5A 3BUIA 1I4DA 3LVTA 4AZ6A 2YIBA 3DDGA 2F7RA 4D8JA 1I49A 1I4TA 4WPCA 1ZWWA 1W9MA 3FD9A 3D2FA 3PLTA 5C5BA 2GF4A 3D52A 3L3PA 3I2WA 3EJRA 3KDRA 4M0MA 4FZPA 3D50A 2ND0A 4JL9A 1R34A 5C5BB 3VEBA 3D4YA 1QWUA 4JN4A 2Z8YA
chains in the Genus database with same CATH topology
3QNIA 4AVMA 4AKVA 3PLTA 2YKTA 2RAKA 5C5BA 1X04A 2Z0OA 3HAIA 3SYVA 4NSWA 1I4DA 2X3WA 3ABHA 4DCNC 3I2WA 4WPEA 3HAHA 1WDZA 4NQIA 2FICA 1Y2OA 2D1LA 2RAJA 3Q0KA 2RAIA 4BNEA 2D4CA 3LLLA 2EFKA 3QE6A 1I49A 2X3VA 3ACOA 1X03A 2C08A 2EFLA 4ATMA 2Z0VA 3Q84A 1I4LA 1I4TA 3SOGA 4DYLA 2V0OA 3OK8A 3QWEA 2Z0NA 3HAJA 2Q12A 3G9GA 5C5BB 4FZSA 2ELBA 2X3XA 4I1QA 4WPCA 1ZWWA 1URUA 2Q13A 4H8SA 3CAZA 3DYTA 3M3WA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3QNI A;  4AVM A;  4AKV A;  3PLT A;  2YKT A;  2RAK A;  5C5B A;  1X04 A;  2Z0O A;  3HAI A;  3SYV A;  4NSW A;  1I4D A;  2X3W A;  3ABH A;  4DCN C;  3I2W A;  4WPE A;  3HAH A;  1WDZ A;  4NQI A;  2FIC A;  1Y2O A;  2D1L A;  2RAJ A;  3Q0K A;  2RAI A;  4BNE A;  2D4C A;  3LLL A;  2EFK A;  3QE6 A;  1I49 A;  2X3V A;  3ACO A;  1X03 A;  2C08 A;  2EFL A;  4ATM A;  2Z0V A;  3Q84 A;  1I4L A;  1I4T A;  3SOG A;  4DYL A;  2V0O A;  3OK8 A;  3QWE A;  2Z0N A;  3HAJ A;  2Q12 A;  3G9G A;  5C5B B;  4FZS A;  2ELB A;  2X3X A;  4I1Q A;  4WPC A;  1ZWW A;  1URU A;  2Q13 A;  4H8S A;  3CAZ A;  3DYT A;  3M3W A; 
#chains in the Genus database with same CATH topology
 3QNI A;  2LM0 A;  4AVM A;  2JNS A;  3VEA A;  3ERC C;  4EZV A;  3DDF A;  2F7Q A;  2N3K A;  4UDY X;  2FIC A;  3ACO A;  3T49 A;  4ATM A;  2X3X A;  4IM2 A;  1YWM A;  4JWD A;  1URU A;  1U00 A;  3CVR A;  1OA0 A;  3D51 A;  3SYV A;  4IWO A;  4F00 A;  4WPE A;  4EZX A;  1WDZ A;  3B52 X;  3D2E A;  1UPX A;  3I04 A;  1E2U A;  2C08 A;  2O0I 1;  1E9V A;  2Z0N A;  2ZXQ A;  2ND1 A;  3DPP A;  2MI7 A;  4JLC A;  3RV1 A;  4NPH A;  4E81 A;  2F1B A;  1GNL A;  1X04 A;  2YIV X;  2X3W A;  1TQS A;  2YL6 A;  3O3N B;  3LLL A;  2X5C A;  3QE6 A;  3DPQ A;  2PMR A;  2YLA A;  4R5L A;  2F7P A;  3QWE A;  4PO2 A;  3CZS A;  2Q12 A;  4G6Q A;  3EJQ A;  3BUB A;  1SUF A;  2F1A A;  4B9Q A;  1TQT A;  3EJU A;  3BUQ A;  4HR1 A;  3GI7 A;  2RAI A;  1X03 A;  4DYL A;  4IW0 A;  3EJS A;  4JNF A;  3ZED A;  4JNE A;  4HR1 B;  1SU8 A;  3RPM A;  3ER9 B;  2YLL A;  1TQV A;  4JWC A;  3F7W A;  1Y2O A;  4EZW A;  3CZN A;  3OK8 A;  5KBP A;  2OBM A;  4FM3 A;  4H8S A;  1R5E A;  1SU7 A;  4R5G A;  1HTY A;  3BVX A;  1DKZ A;  1QX1 A;  5TKY A;  3Q84 A;  4EZO A;  2OBL A;  1JQK A;  3O3M B;  2NCZ A;  2GA9 D;  2Q13 A;  3T47 A;  2ALW A;  3DX2 A;  4AKV A;  1OA1 A;  2RAK A;  2PY6 A;  2QFF A;  4DCN C;  3EJT A;  4R5I A;  4IWQ A;  3L3O M;  2WIN M;  2RT6 A;  4HYB A;  4AZ7 A;  3VKH A;  1GNT A;  3G9G A;  4I1Q A;  2YIA A;  3B51 X;  3KAV A;  3A98 A;  3BVU A;  5FLE X;  3HAI A;  2GAF D;  4IWP A;  3HAH A;  1TQW A;  2Z0V A;  2QKW A;  3DX4 A;  3RV0 A;  2ELB A;  3BVT A;  3DX1 A;  4EZQ A;  3BLB A;  4EZP A;  3CKD A;  2EFK A;  1R33 A;  3B53 X;  4H6H A;  2X3V A;  4E3C A;  4IM3 A;  3DX0 A;  3CAZ A;  2WYI A;  4EZT A;  4HY9 A;  3EJP A;  2Z0O A;  1DKX A;  3DPO A;  3KAW A;  1LQ7 A;  1SU6 A;  2D1L A;  3BVW A;  3QNJ A;  3LMF A;  3DX3 A;  1TQU A;  5FIG A;  3QA8 A;  4EZR A;  2F18 A;  4UDX X;  4AZC A;  4AZH A;  2OO2 A;  4EZN A;  2FYV A;  3BVV A;  3T48 A;  2YL8 A;  3CV5 A;  4FZO A;  4NQI A;  1PS3 A;  2KHO A;  3OWG A;  3Q0K A;  4JWE A;  4AZC B;  2EX3 B;  4AZG A;  2V0O A;  4EZU A;  3T46 A;  3UIT A;  1HXK A;  2YKT A;  3OHX M;  2YI9 A;  4H6I A;  2YI8 A;  3ER8 C;  1DKY A;  2LXY A;  4EZZ A;  2WYH A;  4AZI A;  3I39 X;  2D4C A;  4R5K A;  3D4Z A;  2EFL A;  2OZN B;  2OW7 A;  3HAJ A;  4KIK A;  1HWW A;  4FZS A;  4F01 A;  4IM0 A;  4AZB A;  2YL5 A;  3M3W A;  4NSW A;  5E84 A;  4KIK B;  2EWF A;  2RAJ A;  4JWI A;  4BNE A;  1E1D A;  3T4A G;  3SOG A;  1OAO A;  1O7D B;  2QXL A;  2YL9 A;  2JNK A;  4EZY A;  1O7D C;  1GN9 A;  3BUP A;  1QWN A;  2F7O A;  3BUD A;  3ABH A;  2OW6 A;  4EZS A;  1MJG A;  1ZYL A;  4R5J A;  1I4L A;  3I01 A;  3O3O B;  3DYT A;  3C7N A;  4AZ5 A;  3BUI A;  1I4D A;  3LVT A;  4AZ6 A;  2YIB A;  3DDG A;  2F7R A;  4D8J A;  1I49 A;  1I4T A;  4WPC A;  1ZWW A;  1W9M A;  3FD9 A;  3D2F A;  3PLT A;  5C5B A;  2GF4 A;  3D52 A;  3L3P A;  3I2W A;  3EJR A;  3KDR A;  4M0M A;  4FZP A;  3D50 A;  2ND0 A;  4JL9 A;  1R34 A;  5C5B B;  3VEB A;  3D4Y A;  1QWU A;  4JN4 A;  2Z8Y A; 
#chains in the Genus database with same CATH homology
 3QNI A;  4AVM A;  4AKV A;  3PLT A;  2YKT A;  2RAK A;  5C5B A;  1X04 A;  2Z0O A;  3HAI A;  3SYV A;  4NSW A;  1I4D A;  2X3W A;  3ABH A;  4DCN C;  3I2W A;  4WPE A;  3HAH A;  1WDZ A;  4NQI A;  2FIC A;  1Y2O A;  2D1L A;  2RAJ A;  3Q0K A;  2RAI A;  4BNE A;  2D4C A;  3LLL A;  2EFK A;  3QE6 A;  1I49 A;  2X3V A;  3ACO A;  1X03 A;  2C08 A;  2EFL A;  4ATM A;  2Z0V A;  3Q84 A;  1I4L A;  1I4T A;  3SOG A;  4DYL A;  2V0O A;  3OK8 A;  3QWE A;  2Z0N A;  3HAJ A;  2Q12 A;  3G9G A;  5C5B B;  4FZS A;  2ELB A;  2X3X A;  4I1Q A;  4WPC A;  1ZWW A;  1URU A;  2Q13 A;  4H8S A;  3CAZ A;  3DYT A;  3M3W A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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