3QNIA

Crystal structure of human pacsin 1 f-bar domain
Total Genus 110

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
110
sequence length
293
structure length
273
Chain Sequence
TTDSFWEVGNYKRTVKRIDDGHRLCNDLMNCVQERAKIEKAYGQQLTDWAKRWRQLIEKGPQYGSLERAWGAIMTEADKVSELHQEVKNNLLNEDLEKVKNWQKDAYHKQIMGGFKETKEAEDGFRKAQKPWAKKMKELEAAKKAYHLACKEEKLAMQDKVDKCKQDVQKTQEKYEKVLEDVGKTTPQYMENMEQVFEQCQQFEEKRLVFLKEVLLDIKRHLNLAENSSYIHVYRELEQAIRGADAQEDLRWFRSTSGPGMPMNWPQFEEWNP

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
TI1 (15-18)AH2 (78-120)TI2 (18-21)AH1 (25-73)TII1 (21-24)AH4 (200-256)EMPTYTIV1 (124-127)3H1 (196-199)TI5 (257-260)TI6 (258-261)AH3 (130-168)TI3 (168-171)TI4 (193-196)Updating...
connected with : NaN
molecule tags Endocytosis
source organism Homo sapiens
publication title Crystal structure of human PACSIN 1 F-BAR domain
rcsb
molecule keywords Protein kinase C and casein kinase substrate in neurons prot
total genus 110
structure length 273
sequence length 293
chains with identical sequence B
ec nomenclature
pdb deposition date 2011-02-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00611 FCH Fes/CIP4, and EFC/F-BAR homology domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1270.60 Mainly Alpha Up-down Bundle Substrate Binding Domain Of Dnak; Chain:A; Domain 2 Arfaptin homology (AH) domain/BAR domain 3qniA01
1X03A 2D4CA 2Q12A 3OK8A 5C5BB 3SOGA 4DYLA 3ABHA 1I49A 2EFLA 3QWEA 1WDZA 2Z0VA 3LLLA 1ZWWA 1URUA 4AVMA 4NQIA 3ACOA 4FZSA 2Z0OA 3DYTA 4WPCA 4DCNC 2Q13A 3I2WA 2EFKA 2FICA 1I4TA 4WPEA 3HAJA 3CAZA 2X3VA 2YKTA 3QNIA 2V0OA 1Y2OA 3Q0KA 2D1LA 3PLTA 4NSWA 2X3WA 4BNEA 4AKVA 1I4LA 2Z0NA 1X04A 3QE6A 3HAIA 5C5BA 1I4DA 4ATMA 2RAIA 3Q84A 4H8SA 2RAJA 2C08A 2RAKA 3G9GA 3HAHA 3M3WA 4I1QA 3SYVA 2X3XA 2ELBA
chains in the Genus database with same CATH superfamily
3QWEA 3D52A 1TQWA 3CZSA 4JWEA 1PS3A 4G6QA 1QX1A 4FZOA 2OO2A 2Z0NA 4ATMA 2F7OA 2NCZA 2GA9D 3DDFA 5C5BB 1UPXA 3ABHA 3CZNA 4UDYX 2YL8A 4DCNC 3BVTA 3Q0KA 4JN4A 4JNFA 3I39X 1E1DA 3LLLA 3OWGA 1URUA 2PMRA 2OZNB 4AZCA 3DYTA 3ERCC 2YIBA 3L3PA 2PY6A 3BUIA 1HTYA 3QE6A 4HR1B 3T46A 2MI7A 1E9VA 4D8JA 1MJGA 2ND1A 2C08A 3KAVA 3D4ZA 3DPQA 3D4YA 4EZRA 3D2EA 1QWUA 2OBMA 4NSWA 4AZ6A 3B53X 2X5CA 3O3OB 3Q84A 2X3XA 2YL6A 4JNEA 2F1BA 1WDZA 1O7DC 1ZWWA 1W9MA 4NQIA 4JL9A 4HYBA 4IW0A 1SU7A 1TQUA 2X3WA 4IM3A 1I4LA 3DPOA 4EZUA 1GNLA 3O3MB 2Q12A 2Z8YA 3RV0A 4AZ5A 3DDGA 5TKYA 3ACOA 1O7DB 3EJUA 3KAWA 3ER9B 3D50A 4BNEA 3T4AG 4FM3A 1GN9A 2WYIA 4R5JA 1R33A 3HAHA 1OAOA 4IM2A 3EJSA 1X03A 3DX3A 1SU6A 2QKWA 3GI7A 3BVWA 4R5KA 2Q13A 1QWNA 2EFKA 4B9QA 1I4TA 3CAZA 3T47A 2V0OA 4NPHA 2RT6A 4H6HA 4E81A 2YLAA 3BVXA 3BLBA 3SYVA 4EZTA 1TQTA 2YLLA 4F01A 1DKZA 4JWCA 1OA0A 2ALWA 4JWIA 3OHXM 4WPCA 1DKXA 1SU8A 2YI8A 4EZYA 4R5IA 4HY9A 4I1QA 4KIKA 3DX1A 2F18A 4IM0A 3CVRA 4AZBA 2GF4A 3QNJA 3I2WA 3CV5A 4IWQA 3QNIA 3CKDA 2YIVX 3I01A 4UDXX 3T49A 3EJPA 2EX3B 4EZSA 4IWPA 2D4CA 1R34A 1ZYLA 2WINM 4F00A 3DX0A 2F7PA 1TQVA 1R5EA 4EZZA 4EZVA 5FIGA 3B51X 2YKTA 4AZCB 3DPPA 1X04A 2OW7A 5C5BA 2YL9A 1I4DA 3BUBA 2JNKA 4E3CA 1OA1A 1YWMA 4JWDA 2RAKA 3VEAA 3B52X 4DYLA 2N3KA 1I49A 2GAFD 3A98A 1GNTA 4KIKB 3VKHA 4WPEA 3HAJA 3LMFA 2LM0A 3EJRA 2F1AA 3T48A 5FLEX 1SUFA 2ELBA 4M0MA 2KHOA 2EFLA 4HR1A 4R5LA 1Y2OA 4EZPA 2RAIA 1U00A 3OK8A 4JLCA 2OW6A 2Z0VA 3F7WA 4FZSA 5E84A 4PO2A 4H6IA 3RPMA 2F7RA 2LXYA 2QXLA 3D51A 4AZHA 2D1LA 3KDRA 1HWWA 2YL5A 2O0I1 3UITA 1TQSA 3ER8C 3SOGA 4EZQA 3D2FA 2Z0OA 4IWOA 3C7NA 3BUQA 2QFFA 3ZEDA 4AZGA 2YI9A 2F7QA 3PLTA 1E2UA 4FZPA 4EZOA 1LQ7A 4H8SA 3BUDA 2FYVA 3DX4A 2OBLA 3EJTA 4AZIA 2WYHA 3RV1A 2FICA 3I04A 3QA8A 3BVVA 4R5GA 2YIAA 3HAIA 4EZNA 1DKYA 3M3WA 3VEBA 3BUPA 3L3OM 4EZXA 2ND0A 4AVMA 3FD9A 3BVUA 2JNSA 5KBPA 2X3VA 4EZWA 3DX2A 1JQKA 3LVTA 4AKVA 4AZ7A 2ZXQA 2EWFA 2RAJA 3G9GA 3EJQA 3O3NB 1HXKA
chains in the Genus database with same CATH topology
1X03A 2D4CA 2Q12A 3OK8A 5C5BB 3SOGA 4DYLA 3ABHA 1I49A 2EFLA 3QWEA 1WDZA 2Z0VA 3LLLA 1ZWWA 1URUA 4AVMA 4NQIA 3ACOA 4FZSA 2Z0OA 3DYTA 4WPCA 4DCNC 2Q13A 3I2WA 2EFKA 2FICA 1I4TA 4WPEA 3HAJA 3CAZA 2X3VA 2YKTA 3QNIA 2V0OA 1Y2OA 3Q0KA 2D1LA 3PLTA 4NSWA 2X3WA 4BNEA 4AKVA 1I4LA 2Z0NA 1X04A 3QE6A 3HAIA 5C5BA 1I4DA 4ATMA 2RAIA 3Q84A 4H8SA 2RAJA 2C08A 2RAKA 3G9GA 3HAHA 3M3WA 4I1QA 3SYVA 2X3XA 2ELBA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1X03 A;  2D4C A;  2Q12 A;  3OK8 A;  5C5B B;  3SOG A;  4DYL A;  3ABH A;  1I49 A;  2EFL A;  3QWE A;  1WDZ A;  2Z0V A;  3LLL A;  1ZWW A;  1URU A;  4AVM A;  4NQI A;  3ACO A;  4FZS A;  2Z0O A;  3DYT A;  4WPC A;  4DCN C;  2Q13 A;  3I2W A;  2EFK A;  2FIC A;  1I4T A;  4WPE A;  3HAJ A;  3CAZ A;  2X3V A;  2YKT A;  3QNI A;  2V0O A;  1Y2O A;  3Q0K A;  2D1L A;  3PLT A;  4NSW A;  2X3W A;  4BNE A;  4AKV A;  1I4L A;  2Z0N A;  1X04 A;  3QE6 A;  3HAI A;  5C5B A;  1I4D A;  4ATM A;  2RAI A;  3Q84 A;  4H8S A;  2RAJ A;  2C08 A;  2RAK A;  3G9G A;  3HAH A;  3M3W A;  4I1Q A;  3SYV A;  2X3X A;  2ELB A; 
#chains in the Genus database with same CATH topology
 3QWE A;  3D52 A;  1TQW A;  3CZS A;  4JWE A;  1PS3 A;  4G6Q A;  1QX1 A;  4FZO A;  2OO2 A;  2Z0N A;  4ATM A;  2F7O A;  2NCZ A;  2GA9 D;  3DDF A;  5C5B B;  1UPX A;  3ABH A;  3CZN A;  4UDY X;  2YL8 A;  4DCN C;  3BVT A;  3Q0K A;  4JN4 A;  4JNF A;  3I39 X;  1E1D A;  3LLL A;  3OWG A;  1URU A;  2PMR A;  2OZN B;  4AZC A;  3DYT A;  3ERC C;  2YIB A;  3L3P A;  2PY6 A;  3BUI A;  1HTY A;  3QE6 A;  4HR1 B;  3T46 A;  2MI7 A;  1E9V A;  4D8J A;  1MJG A;  2ND1 A;  2C08 A;  3KAV A;  3D4Z A;  3DPQ A;  3D4Y A;  4EZR A;  3D2E A;  1QWU A;  2OBM A;  4NSW A;  4AZ6 A;  3B53 X;  2X5C A;  3O3O B;  3Q84 A;  2X3X A;  2YL6 A;  4JNE A;  2F1B A;  1WDZ A;  1O7D C;  1ZWW A;  1W9M A;  4NQI A;  4JL9 A;  4HYB A;  4IW0 A;  1SU7 A;  1TQU A;  2X3W A;  4IM3 A;  1I4L A;  3DPO A;  4EZU A;  1GNL A;  3O3M B;  2Q12 A;  2Z8Y A;  3RV0 A;  4AZ5 A;  3DDG A;  5TKY A;  3ACO A;  1O7D B;  3EJU A;  3KAW A;  3ER9 B;  3D50 A;  4BNE A;  3T4A G;  4FM3 A;  1GN9 A;  2WYI A;  4R5J A;  1R33 A;  3HAH A;  1OAO A;  4IM2 A;  3EJS A;  1X03 A;  3DX3 A;  1SU6 A;  2QKW A;  3GI7 A;  3BVW A;  4R5K A;  2Q13 A;  1QWN A;  2EFK A;  4B9Q A;  1I4T A;  3CAZ A;  3T47 A;  2V0O A;  4NPH A;  2RT6 A;  4H6H A;  4E81 A;  2YLA A;  3BVX A;  3BLB A;  3SYV A;  4EZT A;  1TQT A;  2YLL A;  4F01 A;  1DKZ A;  4JWC A;  1OA0 A;  2ALW A;  4JWI A;  3OHX M;  4WPC A;  1DKX A;  1SU8 A;  2YI8 A;  4EZY A;  4R5I A;  4HY9 A;  4I1Q A;  4KIK A;  3DX1 A;  2F18 A;  4IM0 A;  3CVR A;  4AZB A;  2GF4 A;  3QNJ A;  3I2W A;  3CV5 A;  4IWQ A;  3QNI A;  3CKD A;  2YIV X;  3I01 A;  4UDX X;  3T49 A;  3EJP A;  2EX3 B;  4EZS A;  4IWP A;  2D4C A;  1R34 A;  1ZYL A;  2WIN M;  4F00 A;  3DX0 A;  2F7P A;  1TQV A;  1R5E A;  4EZZ A;  4EZV A;  5FIG A;  3B51 X;  2YKT A;  4AZC B;  3DPP A;  1X04 A;  2OW7 A;  5C5B A;  2YL9 A;  1I4D A;  3BUB A;  2JNK A;  4E3C A;  1OA1 A;  1YWM A;  4JWD A;  2RAK A;  3VEA A;  3B52 X;  4DYL A;  2N3K A;  1I49 A;  2GAF D;  3A98 A;  1GNT A;  4KIK B;  3VKH A;  4WPE A;  3HAJ A;  3LMF A;  2LM0 A;  3EJR A;  2F1A A;  3T48 A;  5FLE X;  1SUF A;  2ELB A;  4M0M A;  2KHO A;  2EFL A;  4HR1 A;  4R5L A;  1Y2O A;  4EZP A;  2RAI A;  1U00 A;  3OK8 A;  4JLC A;  2OW6 A;  2Z0V A;  3F7W A;  4FZS A;  5E84 A;  4PO2 A;  4H6I A;  3RPM A;  2F7R A;  2LXY A;  2QXL A;  3D51 A;  4AZH A;  2D1L A;  3KDR A;  1HWW A;  2YL5 A;  2O0I 1;  3UIT A;  1TQS A;  3ER8 C;  3SOG A;  4EZQ A;  3D2F A;  2Z0O A;  4IWO A;  3C7N A;  3BUQ A;  2QFF A;  3ZED A;  4AZG A;  2YI9 A;  2F7Q A;  3PLT A;  1E2U A;  4FZP A;  4EZO A;  1LQ7 A;  4H8S A;  3BUD A;  2FYV A;  3DX4 A;  2OBL A;  3EJT A;  4AZI A;  2WYH A;  3RV1 A;  2FIC A;  3I04 A;  3QA8 A;  3BVV A;  4R5G A;  2YIA A;  3HAI A;  4EZN A;  1DKY A;  3M3W A;  3VEB A;  3BUP A;  3L3O M;  4EZX A;  2ND0 A;  4AVM A;  3FD9 A;  3BVU A;  2JNS A;  5KBP A;  2X3V A;  4EZW A;  3DX2 A;  1JQK A;  3LVT A;  4AKV A;  4AZ7 A;  2ZXQ A;  2EWF A;  2RAJ A;  3G9G A;  3EJQ A;  3O3N B;  1HXK A; 
#chains in the Genus database with same CATH homology
 1X03 A;  2D4C A;  2Q12 A;  3OK8 A;  5C5B B;  3SOG A;  4DYL A;  3ABH A;  1I49 A;  2EFL A;  3QWE A;  1WDZ A;  2Z0V A;  3LLL A;  1ZWW A;  1URU A;  4AVM A;  4NQI A;  3ACO A;  4FZS A;  2Z0O A;  3DYT A;  4WPC A;  4DCN C;  2Q13 A;  3I2W A;  2EFK A;  2FIC A;  1I4T A;  4WPE A;  3HAJ A;  3CAZ A;  2X3V A;  2YKT A;  3QNI A;  2V0O A;  1Y2O A;  3Q0K A;  2D1L A;  3PLT A;  4NSW A;  2X3W A;  4BNE A;  4AKV A;  1I4L A;  2Z0N A;  1X04 A;  3QE6 A;  3HAI A;  5C5B A;  1I4D A;  4ATM A;  2RAI A;  3Q84 A;  4H8S A;  2RAJ A;  2C08 A;  2RAK A;  3G9G A;  3HAH A;  3M3W A;  4I1Q A;  3SYV A;  2X3X A;  2ELB A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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