4BXXX

Arrested rna polymerase ii-bye1 complex
Total Genus 26

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
26
sequence length
134
structure length
120
Chain Sequence
EKEHKLRYNAEKMFSTLFSKFIVPETIEAKVISISQEFAHNLEEELYKACLNVEKIYTEKVRSLYSNLKDKKNLELKAHVVEGKLPLNKLVNMNASELANPDLQEFKEKRDKIILENFIV

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
molecule tags Transcription
source organism Saccharomyces cerevisiae
publication title Structures of RNA Polymerase II Complexes with Bye1, a Chromatin-Binding Phf3/Dido1 Homologue
pubmed doi rcsb
molecule keywords DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1
total genus 26
structure length 120
sequence length 134
ec nomenclature
pdb deposition date 2013-07-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
X PF07500 TFIIS_M Transcription factor S-II (TFIIS), central domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.472.30 Mainly Alpha Orthogonal Bundle Cyclin A; domain 1 Transcription elongation factor S-II, central domain 4bxxX00
3NDQA 3GTMS 3PO3S 2DMEA 1ENWA 4BY7X 4BY1X 4BXXX 2LW4A
chains in the Genus database with same CATH superfamily
3QYGB 3EOCB 1BU2A 5IF1B 4OB0B 4YOZA 2KMGA 1H27B 3HHTB 5LMKB 1JOWA 3QYBA 3MY5B 2UZBB 3POMA 2PJQA 1H25B 2W96A 4JX6A 4NSTB 4HNVA 3HO8A 4BCIB 4BCJB 3QZ5B 3A8MB 4ROCA 4BY1X 4F7NB 3DDPB 1PKDB 4BBRM 1F5QB 4CFNB 2G77A 2QDYB 1KXUA 1TFBA 3VYHB 3GTMS 4AKHA 2ZPGB 2C5NB 1URCB 5L2WB 4CXAB 4HL4A 2BKZB 3TNHB 2C6TB 2CYZB 4UN0A 2WMBB 2C5XB 2UZLB 5HBHB 3O0GD 2ZPIB 2IW8B 1GY3B 4ZGJB 3KHIA 4KRDB 5EFQB 2DD4B 4EORB 1AISB 4TTHA 3QHWB 4F7LB 4OB1B 2UZDB 3X26B 3TW6A 2IN3A 3QZ9B 3WVEB 3VKGA 2W9ZA 4F70B 2BS3A 3DDQB 5HBJB 3BHTB 3MI9B 1FINB 1O9KA 4M6VA 2I53A 3A8LB 5FGKB 1UNGD 3DJBA 1QMZB 4YC3B 2WFYB 3A8OB 4JX4A 2DXBB 4OB2B 4BBSM 3K7AM 1OKWB 4KRCB 1GUXA 4BCMB 3BG9A 2ZPHB 3X25B 2X1NB 2PHGA 1H4LD 4MFEA 2PMIB 2CJMB 2WJ9A 4AKGA 4BCOB 2CZ1B 4II5B 2CZ6B 1H24B 1UGSB 4EOPB 2G9XB 4EONB 4EOQB 4EOMB 4MIMA 3BHUB 3X28B 3EJ1B 5IHYA 3X24B 5HVYB 3VYGB 1OIUB 4BCQB 1OI9B 4OGRB 2F2CA 2BS2A 2C5VB 1UGRB 2DXCB 4YOOA 1P5EB 5I5ZB 2BPMB 2CCHB 5IDPB 2EUFA 3EIDB 1E9HB 2R7GA 1VINA 2WXVB 1AHJB 2W2HA 1UGQB 4EOJB 1OGUB 4FM4B 1FKMA 4RODA 1W98B 4BCFB 4IMYB 4F6SB 4FX3B 3X20B 4Y72B 2B9RA 2ZPEB 2ZPBB 4F6UB 4F7JB 2CZ0B 1UNLD 2DD5B 4QSHA 2WPAB 1VOLA 2ZCFB 3TNWB 4CFUD 3DOGB 5LQFB 1OL1B 2CCIB 2CZ7B 5CYIB 2WIHB 2QDJA 4AI6A 4MFDA 4CFMB 3A8HB 3HBLA 2IW9B 3RGFB 2DPPB 3MIAB 5BNJB 4CRLB 4F7SB 3VKHA 4EC8B 2W99A 3TN8B 1VYWB 3H4CA 1H28B 1G3NC 4BCMD 5DQVA 4ELLA 2UZEB 3BHVB 1O9KB 2QF7A 1GH6B 2BS4A 2D0QB 2C4GB 2WHBB 5CEIB 3QYEA 1FVVB 4G6LB 4BCHB 4I3ZB 3A8GB 4BY7X 5HQ0B 2C5OB 4JX5A 3NDQA 4BCQD 4BCKB 1H1PB 4HLQA 1GUXB 3DTOA 4LOCA 4EOSB 3LQ5B 1H26B 4NC6A 4BCNB 2PK2A 2V22B 2UUEB 1JKWA 4EOIB 1ENWA 3QWLA 2KR6A 3PO3S 5HBEB 2WMAB 2IW6B 2ZPFB 1IREB 4OR5B 1UNHD 4OB3B 1V29B 3WVDB 3QXEB 1H1QB 2IVXA 5EJCA 4F6WB 3M03A 4CFVB 2W9FA 3BLHB 3BLRB 1E7PA 1JSUB 1OIYB 4CFXB 2DMEA 4ZGDB 1OKVB 3TNIB 3B57A 2I40B 3F5XB 2LW4A 3MY1B 4ELJA 3HZJA 5HNBB 4HNUA 4EOOB 1QLBA 4BCPB 2WIPB 3TW7A 5DQWA 1OL2B 4EOLB 1H1SB 1N4MA 4AKIA 1AD6A 4EOKB 3QYHB 5ACBA 4EC9B 1XO2A 3DL1A 2AHJB 1H1RB 1UGPB 4CFUB 3QHRB 1JSTB 1C9BA 1D3UB 2WEVB 4Z6YA 2PK9B 4CFWB 1TD6A 1ZP2A 2ZZDB 3HB9A 3G33B 4ROEA 5ICPB 2QQ8A 4ZGEB 2QGSA 4BCGB 4BCND 4YOSA 3BLQB 5IDNB 2JGZB 3BG5A 3BG3A 4HNTA 2QFZA 4BXXX
chains in the Genus database with same CATH topology
3NDQA 3GTMS 3PO3S 2DMEA 1ENWA 4BY7X 4BY1X 4BXXX 2LW4A
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 3NDQ A;  3GTM S;  3PO3 S;  2DME A;  1ENW A;  4BY7 X;  4BY1 X;  4BXX X;  2LW4 A; 
#chains in the Genus database with same CATH topology
 3QYG B;  3EOC B;  1BU2 A;  5IF1 B;  4OB0 B;  4YOZ A;  2KMG A;  1H27 B;  3HHT B;  5LMK B;  1JOW A;  3QYB A;  3MY5 B;  2UZB B;  3POM A;  2PJQ A;  1H25 B;  2W96 A;  4JX6 A;  4NST B;  4HNV A;  3HO8 A;  4BCI B;  4BCJ B;  3QZ5 B;  3A8M B;  4ROC A;  4BY1 X;  4F7N B;  3DDP B;  1PKD B;  4BBR M;  1F5Q B;  4CFN B;  2G77 A;  2QDY B;  1KXU A;  1TFB A;  3VYH B;  3GTM S;  4AKH A;  2ZPG B;  2C5N B;  1URC B;  5L2W B;  4CXA B;  4HL4 A;  2BKZ B;  3TNH B;  2C6T B;  2CYZ B;  4UN0 A;  2WMB B;  2C5X B;  2UZL B;  5HBH B;  3O0G D;  2ZPI B;  2IW8 B;  1GY3 B;  4ZGJ B;  3KHI A;  4KRD B;  5EFQ B;  2DD4 B;  4EOR B;  1AIS B;  4TTH A;  3QHW B;  4F7L B;  4OB1 B;  2UZD B;  3X26 B;  3TW6 A;  2IN3 A;  3QZ9 B;  3WVE B;  3VKG A;  2W9Z A;  4F70 B;  2BS3 A;  3DDQ B;  5HBJ B;  3BHT B;  3MI9 B;  1FIN B;  1O9K A;  4M6V A;  2I53 A;  3A8L B;  5FGK B;  1UNG D;  3DJB A;  1QMZ B;  4YC3 B;  2WFY B;  3A8O B;  4JX4 A;  2DXB B;  4OB2 B;  4BBS M;  3K7A M;  1OKW B;  4KRC B;  1GUX A;  4BCM B;  3BG9 A;  2ZPH B;  3X25 B;  2X1N B;  2PHG A;  1H4L D;  4MFE A;  2PMI B;  2CJM B;  2WJ9 A;  4AKG A;  4BCO B;  2CZ1 B;  4II5 B;  2CZ6 B;  1H24 B;  1UGS B;  4EOP B;  2G9X B;  4EON B;  4EOQ B;  4EOM B;  4MIM A;  3BHU B;  3X28 B;  3EJ1 B;  5IHY A;  3X24 B;  5HVY B;  3VYG B;  1OIU B;  4BCQ B;  1OI9 B;  4OGR B;  2F2C A;  2BS2 A;  2C5V B;  1UGR B;  2DXC B;  4YOO A;  1P5E B;  5I5Z B;  2BPM B;  2CCH B;  5IDP B;  2EUF A;  3EID B;  1E9H B;  2R7G A;  1VIN A;  2WXV B;  1AHJ B;  2W2H A;  1UGQ B;  4EOJ B;  1OGU B;  4FM4 B;  1FKM A;  4ROD A;  1W98 B;  4BCF B;  4IMY B;  4F6S B;  4FX3 B;  3X20 B;  4Y72 B;  2B9R A;  2ZPE B;  2ZPB B;  4F6U B;  4F7J B;  2CZ0 B;  1UNL D;  2DD5 B;  4QSH A;  2WPA B;  1VOL A;  2ZCF B;  3TNW B;  4CFU D;  3DOG B;  5LQF B;  1OL1 B;  2CCI B;  2CZ7 B;  5CYI B;  2WIH B;  2QDJ A;  4AI6 A;  4MFD A;  4CFM B;  3A8H B;  3HBL A;  2IW9 B;  3RGF B;  2DPP B;  3MIA B;  5BNJ B;  4CRL B;  4F7S B;  3VKH A;  4EC8 B;  2W99 A;  3TN8 B;  1VYW B;  3H4C A;  1H28 B;  1G3N C;  4BCM D;  5DQV A;  4ELL A;  2UZE B;  3BHV B;  1O9K B;  2QF7 A;  1GH6 B;  2BS4 A;  2D0Q B;  2C4G B;  2WHB B;  5CEI B;  3QYE A;  1FVV B;  4G6L B;  4BCH B;  4I3Z B;  3A8G B;  4BY7 X;  5HQ0 B;  2C5O B;  4JX5 A;  3NDQ A;  4BCQ D;  4BCK B;  1H1P B;  4HLQ A;  1GUX B;  3DTO A;  4LOC A;  4EOS B;  3LQ5 B;  1H26 B;  4NC6 A;  4BCN B;  2PK2 A;  2V22 B;  2UUE B;  1JKW A;  4EOI B;  1ENW A;  3QWL A;  2KR6 A;  3PO3 S;  5HBE B;  2WMA B;  2IW6 B;  2ZPF B;  1IRE B;  4OR5 B;  1UNH D;  4OB3 B;  1V29 B;  3WVD B;  3QXE B;  1H1Q B;  2IVX A;  5EJC A;  4F6W B;  3M03 A;  4CFV B;  2W9F A;  3BLH B;  3BLR B;  1E7P A;  1JSU B;  1OIY B;  4CFX B;  2DME A;  4ZGD B;  1OKV B;  3TNI B;  3B57 A;  2I40 B;  3F5X B;  2LW4 A;  3MY1 B;  4ELJ A;  3HZJ A;  5HNB B;  4HNU A;  4EOO B;  1QLB A;  4BCP B;  2WIP B;  3TW7 A;  5DQW A;  1OL2 B;  4EOL B;  1H1S B;  1N4M A;  4AKI A;  1AD6 A;  4EOK B;  3QYH B;  5ACB A;  4EC9 B;  1XO2 A;  3DL1 A;  2AHJ B;  1H1R B;  1UGP B;  4CFU B;  3QHR B;  1JST B;  1C9B A;  1D3U B;  2WEV B;  4Z6Y A;  2PK9 B;  4CFW B;  1TD6 A;  1ZP2 A;  2ZZD B;  3HB9 A;  3G33 B;  4ROE A;  5ICP B;  2QQ8 A;  4ZGE B;  2QGS A;  4BCG B;  4BCN D;  4YOS A;  3BLQ B;  5IDN B;  2JGZ B;  3BG5 A;  3BG3 A;  4HNT A;  2QFZ A;  4BXX X; 
#chains in the Genus database with same CATH homology
 3NDQ A;  3GTM S;  3PO3 S;  2DME A;  1ENW A;  4BY7 X;  4BY1 X;  4BXX X;  2LW4 A;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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