4BY1X

Elongating rna polymerase ii-bye1 tld complex soaked with ampcpp
Total Genus 21

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
21
sequence length
134
structure length
116
Chain Sequence
EKEHKLRYNAEKMFSTLSKFIVPETIEAVISISQEFAHNLEEELYKACLNVEKIYTEKVRSLYSNLKDKKNLELKAHVVELPLNKLVNMNASELANPDLQEFKEKRDKIILENFIV

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
molecule tags Transcription
source organism Saccharomyces cerevisiae
publication title Structures of RNA Polymerase II Complexes with Bye1, a Chromatin-Binding Phf3/Dido1 Homologue
pubmed doi rcsb
molecule keywords DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1
total genus 21
structure length 116
sequence length 134
ec nomenclature
pdb deposition date 2013-07-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
X PF07500 TFIIS_M Transcription factor S-II (TFIIS), central domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.472.30 Mainly Alpha Orthogonal Bundle Cyclin A; domain 1 Transcription elongation factor S-II, central domain 4by1X00
4BY7X 1ENWA 2LW4A 4BXXX 3GTMS 3PO3S 3NDQA 4BY1X 2DMEA
chains in the Genus database with same CATH superfamily
1W98B 4F70B 1ENWA 4OR5B 3EJ1B 1OKWB 4JX4A 4ZGEB 1E7PA 4BCGB 1JKWA 1H24B 1UGPB 1UGQB 3BHUB 4F7LB 3DOGB 1AHJB 2CZ1B 4CFNB 1H1RB 3EOCB 4CFUB 3TW7A 2IW8B 3X20B 4BCPB 3DDPB 5EJCA 5CEIB 4AKIA 4OB2B 2CYZB 1GY3B 3A8OB 3VKGA 3F5XB 1KXUA 2D0QB 2QDYB 4LOCA 1D3UB 3VYGB 5HBEB 5DQWA 2C5OB 2CZ7B 1JSTB 2BS4A 1AD6A 3H4CA 5HBHB 2IW9B 3BLQB 4F7NB 3GTMS 4F7SB 2UZLB 1UNGD 4BY7X 4JX5A 4BBRM 4AI6A 3DTOA 3WVEB 3NDQA 3BG9A 3A8MB 2R7GA 5DQVA 4I3ZB 1QLBA 2WIPB 4NSTB 1VINA 1O9KB 2WJ9A 4M6VA 2ZPIB 3TNIB 4ELLA 1H28B 2C4GB 2WPAB 1VYWB 4HNUA 1UNLD 1F5QB 2I53A 2G77A 4TTHA 5IHYA 3X25B 1AISB 2ZPHB 4CFWB 4ROEA 3WVDB 2PHGA 4AKHA 2JGZB 4BCOB 3O0GD 2W96A 2ZZDB 5LMKB 3KHIA 2BS2A 4MIMA 4BCMB 3TNHB 2X1NB 1BU2A 1OKVB 2QGSA 1H1SB 3EIDB 1V29B 3MIAB 3G33B 3QYHB 1UNHD 4OB1B 3HZJA 4EOIB 5ICPB 1H27B 1FKMA 3BLRB 1UGSB 1P5EB 2V22B 1IREB 4BCNB 4AKGA 3QYBA 3HHTB 4EOLB 4ROCA 2W2HA 3X26B 3B57A 2W9FA 2QF7A 4F6SB 4UN0A 3MY5B 5IDPB 3MY1B 2QQ8A 4G6LB 4ZGDB 3DJBA 1OGUB 3MI9B 4F6WB 1PKDB 5FGKB 3A8LB 2CZ0B 1UGRB 2WFYB 1TD6A 3HBLA 1H25B 4BCKB 2WMBB 2QDJA 3K7AM 2KMGA 3X28B 4YC3B 1URCB 3BG3A 4F6UB 4CFUD 2ZPBB 3RGFB 3QYGB 3TN8B 4EC9B 4EOMB 4OGRB 3BLHB 2IVXA 1O9KA 3VYHB 3LQ5B 2WIHB 2BS3A 4BCIB 2WXVB 2C5VB 2ZPFB 2QFZA 4F7JB 3QZ5B 4Y72B 4ELJA 2CJMB 3DDQB 4BCQB 3QHRB 3A8GB 4YOZA 2UUEB 4KRCB 3QYEA 1FVVB 2F2CA 5HBJB 1H1PB 3BHVB 2IW6B 4YOSA 3BHTB 4MFEA 4EOJB 2UZDB 1N4MA 3POMA 4BY1X 2BPMB 4EOQB 4OB0B 1ZP2A 1GUXB 2WHBB 2ZPEB 3HB9A 4CFMB 1JOWA 1JSUB 3A8HB 2UZBB 4EOPB 2EUFA 2AHJB 2C5XB 5HVYB 4EC8B 2W9ZA 4BCFB 4EONB 5EFQB 2DXCB 4CFVB 4IMYB 4BCMD 5HNBB 5I5ZB 4QSHA 5BNJB 2CCHB 3PO3S 4BCHB 3QHWB 3QWLA 5L2WB 2BKZB 4HNVA 5LQFB 2W99A 2PK9B 2PJQA 4CFXB 3M03A 4CRLB 4II5B 1OL1B 1E9HB 4BXXX 4BCND 2ZCFB 3QZ9B 4HL4A 4HLQA 2PK2A 2KR6A 5CYIB 3QXEB 3BG5A 4OB3B 2C5NB 4EORB 4BCJB 1GH6B 2C6TB 2DMEA 5IF1B 1OIUB 2DPPB 1H26B 1OIYB 4NC6A 4EOOB 2UZEB 2CZ6B 1OL2B 3VKHA 1OI9B 3X24B 2B9RA 2PMIB 4Z6YA 4KRDB 2I40B 1H4LD 2ZPGB 4FX3B 2DD5B 1H1QB 2DXBB 5IDNB 4YOOA 1GUXA 4MFDA 4EOKB 4RODA 2CCIB 4HNTA 1FINB 1VOLA 1XO2A 4CXAB 2WEVB 2G9XB 3DL1A 5ACBA 4EOSB 2IN3A 3TNWB 2LW4A 4JX6A 1QMZB 2DD4B 4BCQD 4ZGJB 4BBSM 4FM4B 1G3NC 3TW6A 2WMAB 1C9BA 5HQ0B 1TFBA 3HO8A
chains in the Genus database with same CATH topology
4BY7X 1ENWA 2LW4A 4BXXX 3GTMS 3PO3S 3NDQA 4BY1X 2DMEA
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 4BY7 X;  1ENW A;  2LW4 A;  4BXX X;  3GTM S;  3PO3 S;  3NDQ A;  4BY1 X;  2DME A; 
#chains in the Genus database with same CATH topology
 1W98 B;  4F70 B;  1ENW A;  4OR5 B;  3EJ1 B;  1OKW B;  4JX4 A;  4ZGE B;  1E7P A;  4BCG B;  1JKW A;  1H24 B;  1UGP B;  1UGQ B;  3BHU B;  4F7L B;  3DOG B;  1AHJ B;  2CZ1 B;  4CFN B;  1H1R B;  3EOC B;  4CFU B;  3TW7 A;  2IW8 B;  3X20 B;  4BCP B;  3DDP B;  5EJC A;  5CEI B;  4AKI A;  4OB2 B;  2CYZ B;  1GY3 B;  3A8O B;  3VKG A;  3F5X B;  1KXU A;  2D0Q B;  2QDY B;  4LOC A;  1D3U B;  3VYG B;  5HBE B;  5DQW A;  2C5O B;  2CZ7 B;  1JST B;  2BS4 A;  1AD6 A;  3H4C A;  5HBH B;  2IW9 B;  3BLQ B;  4F7N B;  3GTM S;  4F7S B;  2UZL B;  1UNG D;  4BY7 X;  4JX5 A;  4BBR M;  4AI6 A;  3DTO A;  3WVE B;  3NDQ A;  3BG9 A;  3A8M B;  2R7G A;  5DQV A;  4I3Z B;  1QLB A;  2WIP B;  4NST B;  1VIN A;  1O9K B;  2WJ9 A;  4M6V A;  2ZPI B;  3TNI B;  4ELL A;  1H28 B;  2C4G B;  2WPA B;  1VYW B;  4HNU A;  1UNL D;  1F5Q B;  2I53 A;  2G77 A;  4TTH A;  5IHY A;  3X25 B;  1AIS B;  2ZPH B;  4CFW B;  4ROE A;  3WVD B;  2PHG A;  4AKH A;  2JGZ B;  4BCO B;  3O0G D;  2W96 A;  2ZZD B;  5LMK B;  3KHI A;  2BS2 A;  4MIM A;  4BCM B;  3TNH B;  2X1N B;  1BU2 A;  1OKV B;  2QGS A;  1H1S B;  3EID B;  1V29 B;  3MIA B;  3G33 B;  3QYH B;  1UNH D;  4OB1 B;  3HZJ A;  4EOI B;  5ICP B;  1H27 B;  1FKM A;  3BLR B;  1UGS B;  1P5E B;  2V22 B;  1IRE B;  4BCN B;  4AKG A;  3QYB A;  3HHT B;  4EOL B;  4ROC A;  2W2H A;  3X26 B;  3B57 A;  2W9F A;  2QF7 A;  4F6S B;  4UN0 A;  3MY5 B;  5IDP B;  3MY1 B;  2QQ8 A;  4G6L B;  4ZGD B;  3DJB A;  1OGU B;  3MI9 B;  4F6W B;  1PKD B;  5FGK B;  3A8L B;  2CZ0 B;  1UGR B;  2WFY B;  1TD6 A;  3HBL A;  1H25 B;  4BCK B;  2WMB B;  2QDJ A;  3K7A M;  2KMG A;  3X28 B;  4YC3 B;  1URC B;  3BG3 A;  4F6U B;  4CFU D;  2ZPB B;  3RGF B;  3QYG B;  3TN8 B;  4EC9 B;  4EOM B;  4OGR B;  3BLH B;  2IVX A;  1O9K A;  3VYH B;  3LQ5 B;  2WIH B;  2BS3 A;  4BCI B;  2WXV B;  2C5V B;  2ZPF B;  2QFZ A;  4F7J B;  3QZ5 B;  4Y72 B;  4ELJ A;  2CJM B;  3DDQ B;  4BCQ B;  3QHR B;  3A8G B;  4YOZ A;  2UUE B;  4KRC B;  3QYE A;  1FVV B;  2F2C A;  5HBJ B;  1H1P B;  3BHV B;  2IW6 B;  4YOS A;  3BHT B;  4MFE A;  4EOJ B;  2UZD B;  1N4M A;  3POM A;  4BY1 X;  2BPM B;  4EOQ B;  4OB0 B;  1ZP2 A;  1GUX B;  2WHB B;  2ZPE B;  3HB9 A;  4CFM B;  1JOW A;  1JSU B;  3A8H B;  2UZB B;  4EOP B;  2EUF A;  2AHJ B;  2C5X B;  5HVY B;  4EC8 B;  2W9Z A;  4BCF B;  4EON B;  5EFQ B;  2DXC B;  4CFV B;  4IMY B;  4BCM D;  5HNB B;  5I5Z B;  4QSH A;  5BNJ B;  2CCH B;  3PO3 S;  4BCH B;  3QHW B;  3QWL A;  5L2W B;  2BKZ B;  4HNV A;  5LQF B;  2W99 A;  2PK9 B;  2PJQ A;  4CFX B;  3M03 A;  4CRL B;  4II5 B;  1OL1 B;  1E9H B;  4BXX X;  4BCN D;  2ZCF B;  3QZ9 B;  4HL4 A;  4HLQ A;  2PK2 A;  2KR6 A;  5CYI B;  3QXE B;  3BG5 A;  4OB3 B;  2C5N B;  4EOR B;  4BCJ B;  1GH6 B;  2C6T B;  2DME A;  5IF1 B;  1OIU B;  2DPP B;  1H26 B;  1OIY B;  4NC6 A;  4EOO B;  2UZE B;  2CZ6 B;  1OL2 B;  3VKH A;  1OI9 B;  3X24 B;  2B9R A;  2PMI B;  4Z6Y A;  4KRD B;  2I40 B;  1H4L D;  2ZPG B;  4FX3 B;  2DD5 B;  1H1Q B;  2DXB B;  5IDN B;  4YOO A;  1GUX A;  4MFD A;  4EOK B;  4ROD A;  2CCI B;  4HNT A;  1FIN B;  1VOL A;  1XO2 A;  4CXA B;  2WEV B;  2G9X B;  3DL1 A;  5ACB A;  4EOS B;  2IN3 A;  3TNW B;  2LW4 A;  4JX6 A;  1QMZ B;  2DD4 B;  4BCQ D;  4ZGJ B;  4BBS M;  4FM4 B;  1G3N C;  3TW6 A;  2WMA B;  1C9B A;  5HQ0 B;  1TFB A;  3HO8 A; 
#chains in the Genus database with same CATH homology
 4BY7 X;  1ENW A;  2LW4 A;  4BXX X;  3GTM S;  3PO3 S;  3NDQ A;  4BY1 X;  2DME A;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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