4BY7X

Elongating rna polymerase ii-bye1 tld complex
Total Genus 28

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
28
sequence length
134
structure length
119
Chain Sequence
EKEHKLRYNAEKMFSTLFSKFIVPETIEAVISISQEFAHNLEEELYKACLNVEKIYTEKVRSLYSNLKDKKNLELKAHVVEGKLPLNKLVNMNASELANPDLQEFKEKRDKIILENFIV

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
molecule tags Transcription
source organism Saccharomyces cerevisiae
publication title Structures of RNA polymerase II complexes with Bye1, a chromatin-binding PHF3/DIDO homologue.
pubmed doi rcsb
molecule keywords DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1
total genus 28
structure length 119
sequence length 134
ec nomenclature
pdb deposition date 2013-07-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
X PF07500 TFIIS_M Transcription factor S-II (TFIIS), central domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.472.30 Mainly Alpha Orthogonal Bundle Cyclin A; domain 1 Transcription elongation factor S-II, central domain 4by7X00
2LW4A 3GTMS 3PO3S 4BXXX 3NDQA 1ENWA 4BY1X 4BY7X 2DMEA
chains in the Genus database with same CATH superfamily
2QF7A 3NDQA 4EOPB 3G33B 4TTHA 4F7NB 2IW9B 4BCKB 1C9BA 3O0GD 1QMZB 3DOGB 3QYGB 2I40B 3MIAB 1E9HB 1N4MA 4CFWB 4BCQB 3TNIB 1OKWB 3MY5B 2ZPBB 2QQ8A 2C4GB 4MFDA 3DL1A 2DD5B 2IW8B 5EJCA 1O9KA 3A8OB 5L2WB 3X25B 1OIUB 4HLQA 4EC9B 3QYHB 1VINA 1E7PA 4FX3B 1UGQB 4BBSM 4FM4B 4Z6YA 1JKWA 4OGRB 2DXBB 3PO3S 1GH6B 3BLQB 1UNHD 4OB0B 1D3UB 1F5QB 4BCGB 3H4CA 2PK9B 3BHVB 3HBLA 2ZPFB 4BCNB 3EJ1B 3VYHB 5I5ZB 4F6SB 4CRLB 2AHJB 5CEIB 4UN0A 2ZPIB 1GUXB 4EOSB 1H24B 2BS4A 3DDQB 3HHTB 1P5EB 4AI6A 1JOWA 3X20B 4ZGEB 2CYZB 2G77A 4G6LB 1GY3B 3QZ5B 4YC3B 1TFBA 1UGPB 4CFUB 2CCIB 3VYGB 4EOOB 1V29B 3QWLA 1O9KB 2W96A 2UZDB 4NSTB 4BCHB 1IREB 3BHUB 3HZJA 3WVEB 1URCB 2W2HA 2EUFA 4JX5A 1GUXA 2PK2A 4CFVB 3X28B 5EFQB 1ZP2A 5IHYA 4BCND 4BCPB 1G3NC 2C5OB 2W9ZA 4II5B 4HNTA 5HNBB 5IDNB 4MFEA 3A8MB 3QHWB 1BU2A 4ELJA 2WHBB 4EOIB 4EONB 2IN3A 1UNGD 1FVVB 2V22B 2UUEB 3VKHA 3TN8B 5BNJB 2C5XB 2WMAB 4F7LB 2ZZDB 2WEVB 2W9FA 4ROEA 3A8HB 3BG9A 5FGKB 3QYEA 4CFUD 2UZLB 4M6VA 4BBRM 3WVDB 4EOJB 3QZ9B 4MIMA 1KXUA 4CFXB 3A8GB 3TW7A 2QFZA 3K7AM 4BCJB 4HNUA 1XO2A 4HL4A 4JX4A 4F6WB 4I3ZB 2QDYB 4YOOA 2UZEB 1FINB 2WMBB 1H1QB 3B57A 2ZCFB 5HBEB 1UGSB 2JGZB 2DPPB 1AD6A 4JX6A 3BHTB 3LQ5B 1JSTB 4EC8B 3X26B 5CYIB 4YOSA 1AHJB 3A8LB 1OIYB 2D0QB 5LQFB 2IVXA 4ZGDB 1H25B 3X24B 5LMKB 4BY1X 4F70B 4CFNB 4F7SB 2WIPB 5ICPB 4EOMB 5HBJB 4F6UB 4KRCB 4Y72B 1PKDB 2IW6B 5HQ0B 2BS3A 5HBHB 3TW6A 2ZPHB 4ELLA 3BG3A 5IF1B 4EOLB 2C6TB 3M03A 2CJMB 4IMYB 1QLBA 3MY1B 3VKGA 2DXCB 3QXEB 2PMIB 1OI9B 3GTMS 4EORB 1H1PB 3HB9A 5ACBA 4CFMB 2X1NB 3QHRB 4YOZA 3HO8A 3RGFB 3BLRB 4AKGA 4BXXX 4OB3B 3DTOA 4BCMB 4BCIB 2ZPGB 2R7GA 4NC6A 1OL2B 1VYWB 3EIDB 2KR6A 1UGRB 2PJQA 1H4LD 1OGUB 5IDPB 3POMA 5DQWA 2CCHB 2WXVB 2W99A 2ZPEB 2CZ7B 4OB1B 1UNLD 4EOQB 2CZ1B 2B9RA 2DMEA 2G9XB 2WPAB 1OL1B 2LW4A 3TNHB 1VOLA 2CZ6B 1TD6A 4OR5B 2DD4B 3BG5A 2WFYB 3BLHB 1H26B 2QGSA 2QDJA 4ZGJB 2CZ0B 1H28B 4BCOB 2BPMB 3MI9B 4KRDB 1H27B 4LOCA 1AISB 4OB2B 3DDPB 2C5NB 5DQVA 4BCFB 3F5XB 2PHGA 2KMGA 4CXAB 2F2CA 1ENWA 1W98B 2I53A 2WJ9A 4ROCA 1FKMA 2UZBB 4BY7X 3EOCB 1H1RB 2WIHB 3TNWB 3DJBA 4BCQD 4BCMD 1OKVB 2BS2A 4EOKB 3QYBA 4RODA 4HNVA 4AKHA 5HVYB 2BKZB 2C5VB 1JSUB 4QSHA 4AKIA 4F7JB 3KHIA 1H1SB
chains in the Genus database with same CATH topology
2LW4A 3GTMS 3PO3S 4BXXX 3NDQA 1ENWA 4BY1X 4BY7X 2DMEA
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 2LW4 A;  3GTM S;  3PO3 S;  4BXX X;  3NDQ A;  1ENW A;  4BY1 X;  4BY7 X;  2DME A; 
#chains in the Genus database with same CATH topology
 2QF7 A;  3NDQ A;  4EOP B;  3G33 B;  4TTH A;  4F7N B;  2IW9 B;  4BCK B;  1C9B A;  3O0G D;  1QMZ B;  3DOG B;  3QYG B;  2I40 B;  3MIA B;  1E9H B;  1N4M A;  4CFW B;  4BCQ B;  3TNI B;  1OKW B;  3MY5 B;  2ZPB B;  2QQ8 A;  2C4G B;  4MFD A;  3DL1 A;  2DD5 B;  2IW8 B;  5EJC A;  1O9K A;  3A8O B;  5L2W B;  3X25 B;  1OIU B;  4HLQ A;  4EC9 B;  3QYH B;  1VIN A;  1E7P A;  4FX3 B;  1UGQ B;  4BBS M;  4FM4 B;  4Z6Y A;  1JKW A;  4OGR B;  2DXB B;  3PO3 S;  1GH6 B;  3BLQ B;  1UNH D;  4OB0 B;  1D3U B;  1F5Q B;  4BCG B;  3H4C A;  2PK9 B;  3BHV B;  3HBL A;  2ZPF B;  4BCN B;  3EJ1 B;  3VYH B;  5I5Z B;  4F6S B;  4CRL B;  2AHJ B;  5CEI B;  4UN0 A;  2ZPI B;  1GUX B;  4EOS B;  1H24 B;  2BS4 A;  3DDQ B;  3HHT B;  1P5E B;  4AI6 A;  1JOW A;  3X20 B;  4ZGE B;  2CYZ B;  2G77 A;  4G6L B;  1GY3 B;  3QZ5 B;  4YC3 B;  1TFB A;  1UGP B;  4CFU B;  2CCI B;  3VYG B;  4EOO B;  1V29 B;  3QWL A;  1O9K B;  2W96 A;  2UZD B;  4NST B;  4BCH B;  1IRE B;  3BHU B;  3HZJ A;  3WVE B;  1URC B;  2W2H A;  2EUF A;  4JX5 A;  1GUX A;  2PK2 A;  4CFV B;  3X28 B;  5EFQ B;  1ZP2 A;  5IHY A;  4BCN D;  4BCP B;  1G3N C;  2C5O B;  2W9Z A;  4II5 B;  4HNT A;  5HNB B;  5IDN B;  4MFE A;  3A8M B;  3QHW B;  1BU2 A;  4ELJ A;  2WHB B;  4EOI B;  4EON B;  2IN3 A;  1UNG D;  1FVV B;  2V22 B;  2UUE B;  3VKH A;  3TN8 B;  5BNJ B;  2C5X B;  2WMA B;  4F7L B;  2ZZD B;  2WEV B;  2W9F A;  4ROE A;  3A8H B;  3BG9 A;  5FGK B;  3QYE A;  4CFU D;  2UZL B;  4M6V A;  4BBR M;  3WVD B;  4EOJ B;  3QZ9 B;  4MIM A;  1KXU A;  4CFX B;  3A8G B;  3TW7 A;  2QFZ A;  3K7A M;  4BCJ B;  4HNU A;  1XO2 A;  4HL4 A;  4JX4 A;  4F6W B;  4I3Z B;  2QDY B;  4YOO A;  2UZE B;  1FIN B;  2WMB B;  1H1Q B;  3B57 A;  2ZCF B;  5HBE B;  1UGS B;  2JGZ B;  2DPP B;  1AD6 A;  4JX6 A;  3BHT B;  3LQ5 B;  1JST B;  4EC8 B;  3X26 B;  5CYI B;  4YOS A;  1AHJ B;  3A8L B;  1OIY B;  2D0Q B;  5LQF B;  2IVX A;  4ZGD B;  1H25 B;  3X24 B;  5LMK B;  4BY1 X;  4F70 B;  4CFN B;  4F7S B;  2WIP B;  5ICP B;  4EOM B;  5HBJ B;  4F6U B;  4KRC B;  4Y72 B;  1PKD B;  2IW6 B;  5HQ0 B;  2BS3 A;  5HBH B;  3TW6 A;  2ZPH B;  4ELL A;  3BG3 A;  5IF1 B;  4EOL B;  2C6T B;  3M03 A;  2CJM B;  4IMY B;  1QLB A;  3MY1 B;  3VKG A;  2DXC B;  3QXE B;  2PMI B;  1OI9 B;  3GTM S;  4EOR B;  1H1P B;  3HB9 A;  5ACB A;  4CFM B;  2X1N B;  3QHR B;  4YOZ A;  3HO8 A;  3RGF B;  3BLR B;  4AKG A;  4BXX X;  4OB3 B;  3DTO A;  4BCM B;  4BCI B;  2ZPG B;  2R7G A;  4NC6 A;  1OL2 B;  1VYW B;  3EID B;  2KR6 A;  1UGR B;  2PJQ A;  1H4L D;  1OGU B;  5IDP B;  3POM A;  5DQW A;  2CCH B;  2WXV B;  2W99 A;  2ZPE B;  2CZ7 B;  4OB1 B;  1UNL D;  4EOQ B;  2CZ1 B;  2B9R A;  2DME A;  2G9X B;  2WPA B;  1OL1 B;  2LW4 A;  3TNH B;  1VOL A;  2CZ6 B;  1TD6 A;  4OR5 B;  2DD4 B;  3BG5 A;  2WFY B;  3BLH B;  1H26 B;  2QGS A;  2QDJ A;  4ZGJ B;  2CZ0 B;  1H28 B;  4BCO B;  2BPM B;  3MI9 B;  4KRD B;  1H27 B;  4LOC A;  1AIS B;  4OB2 B;  3DDP B;  2C5N B;  5DQV A;  4BCF B;  3F5X B;  2PHG A;  2KMG A;  4CXA B;  2F2C A;  1ENW A;  1W98 B;  2I53 A;  2WJ9 A;  4ROC A;  1FKM A;  2UZB B;  4BY7 X;  3EOC B;  1H1R B;  2WIH B;  3TNW B;  3DJB A;  4BCQ D;  4BCM D;  1OKV B;  2BS2 A;  4EOK B;  3QYB A;  4ROD A;  4HNV A;  4AKH A;  5HVY B;  2BKZ B;  2C5V B;  1JSU B;  4QSH A;  4AKI A;  4F7J B;  3KHI A;  1H1S B; 
#chains in the Genus database with same CATH homology
 2LW4 A;  3GTM S;  3PO3 S;  4BXX X;  3NDQ A;  1ENW A;  4BY1 X;  4BY7 X;  2DME A;
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...
How to cite
Application loaded.