4NQI | Genus

Total Genus 92

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	92
sequence length	230
structure length	220
Chain Sequence	NPVIEITLKTINNLKVNSPPLFTEVIKAANKYQQQAQALSQAGLVLADTLTRLTIHNGGDFGEGFKKLADAIKDLENRRDDVAKVLLNEFITPNKQAIEDDQKAIATFEKNYKKDRDQMRQDILKLEAKTRKAGKITELNDKIKESEQLNANKLRDVVLMERRKHATFLSQFNQFLEKEIELSADTMSKFSTNLNTHRDLINSQSQLPLEMESMISKQER

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Signaling protein
source organism	Dictyostelium discoideum
publication title	The inverse BAR domain protein IBARa drives membrane remodeling to control osmoregulation, phagocytosis and cytokinesis. pubmed doi rcsb
molecule keywords	SH3 domain-containing protein
total genus	92
structure length	220
sequence length	230
chains with identical sequence	B, C, D
ec nomenclature
pdb deposition date	2013-11-25

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF08397	IMD	IRSp53/MIM homology domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.20.1270.60	Mainly Alpha	Up-down Bundle	Substrate Binding Domain Of Dnak; Chain:A; Domain 2	Arfaptin homology (AH) domain/BAR domain	4nqiA00

3HAIA 2FICA 3PLTA 3LLLA 1I4TA 2D1LA 3HAHA 3ABHA 1X04A 2RAJA 2Z0VA 1ZWWA 3QE6A 3CAZA 5C5BA 3SOGA 4DYLA 1WDZA 4I1QA 2EFKA 2Q12A 2YKTA 3Q84A 5C5BB 1X03A 4FZSA 2Q13A 2Z0NA 3QWEA 4DCNC 2C08A 2V0OA 4BNEA 1I4DA 1I49A 4AKVA 2RAIA 4ATMA 1URUA 3ACOA 3I2WA 3DYTA 3M3WA 4WPEA 2X3WA 1I4LA 3HAJA 4H8SA 2RAKA 2ELBA 3SYVA 3Q0KA 2X3VA 3G9GA 1Y2OA 2EFLA 3OK8A 3QNIA 4NQIA 4WPCA 4AVMA 4NSWA 2X3XA 2Z0OA 2D4CA
chains in the Genus database with same CATH superfamily

3DX1A 2YLAA 4EZWA 3HAHA 2RAJA 2Z8YA 2F18A 2YI9A 4UDXX 3EJPA 2YL9A 3D51A 4H6HA 1R33A 4EZZA 4NQIA 1TQSA 3BVUA 2OBMA 1DKYA 4EZSA 3ABHA 1X04A 3B53X 1TQTA 1QWNA 3L3PA 3VEBA 3LVTA 1HXKA 3HAJA 3G9GA 4EZVA 2OZNB 3GI7A 4F01A 3BVXA 3BUIA 2YL5A 1TQUA 4JL9A 3I01A 2EFKA 4JWIA 1R34A 4AZGA 1QWUA 4BNEA 3BUPA 4EZOA 1URUA 3M3WA 4AZ6A 2JNSA 3CV5A 1YWMA 1I4TA 3KAVA 4IM3A 4JWCA 3ER9B 3DPOA 3KDRA 1R5EA 3QWEA 4UDYX 2GAFD 3T4AG 2YI8A 3T47A 3SYVA 3D52A 2PY6A 2RT6A 3QA8A 4H6IA 3KAWA 4E3CA 2ND0A 2F7RA 2WINM 2Q13A 4HY9A 4IM0A 4EZTA 4JLCA 2C08A 4JN4A 4EZXA 3ACOA 3D4YA 1SU8A 4WPEA 1E9VA 2YL6A 3ER8C 2OW7A 3BVWA 1Y2OA 3B51X 3BUDA 3ERCC 3DX2A 4B9QA 3SOGA 2WYHA 4I1QA 2Q12A 1SU6A 4FM3A 4IWPA 1DKXA 3EJTA 3QNIA 3BVTA 4NSWA 3T49A 2PMRA 4PO2A 4R5GA 3DX4A 2D1LA 4JWEA 4EZYA 2Z0VA 3F7WA 4NPHA 5TKYA 4DYLA 3O3MB 2V0OA 3D4ZA 3I2WA 5E84A 2O0I1 3Q0KA 3EJQA 4HR1A 3DDGA 3HAIA 1TQVA 1GNLA 2QKWA 4JWDA 3DX3A 1GN9A 3I04A 1I49A 5FLEX 1I4LA 2X3VA 3OWGA 2F1BA 4IM2A 2X3WA 2YIVX 3EJRA 3O3OB 3CAZA 3C7NA 2MI7A 1X03A 3RV0A 2YL8A 4R5KA 4AKVA 4ATMA 2OO2A 2F7OA 4AZ7A 1UPXA 3BVVA 4IWOA 4FZPA 2WYIA 2OW6A 4HR1B 3PLTA 3A98A 3QE6A 2N3KA 3I39X 2ALWA 3LMFA 4DCNC 2QXLA 2ND1A 5KBPA 2LM0A 1I4DA 3RV1A 1U00A 4G6QA 1QX1A 4AVMA 1SU7A 4EZPA 3DDFA 2KHOA 3LLLA 3O3NB 2ZXQA 3D2FA 1ZYLA 1E2UA 4E81A 3BUQA 4M0MA 2EWFA 4AZBA 2EX3B 1MJGA 2YIAA 2X3XA 1OA0A 1O7DC 1PS3A 2FICA 4AZHA 3VEAA 3Q84A 2GF4A 2GA9D 2OBLA 3B52X 3DYTA 4H8SA 2NCZA 1HTYA 2YIBA 1JQKA 3RPMA 2Z0OA 3L3OM 4AZIA 4AZCA 2FYVA 1E1DA 2JNKA 2F7QA 4D8JA 2RAKA 3CKDA 2D4CA 4EZRA 3OHXM 4JNFA 5C5BA 4AZ5A 4EZUA 2X5CA 3UITA 5FIGA 2Z0NA 3BLBA 2RAIA 4KIKA 4IWQA 4HYBA 4FZOA 2EFLA 3FD9A 4R5IA 1TQWA 1O7DB 4EZQA 1LQ7A 2F1AA 3ZEDA 1WDZA 4F00A 4AZCB 2YKTA 3DX0A 2F7PA 4FZSA 3T48A 1SUFA 3DPQA 3VKHA 2ELBA 3T46A 4WPCA 3OK8A 1OAOA 4R5LA 3CZSA 3D50A 1HWWA 3D2EA 2QFFA 1OA1A 4R5JA 1ZWWA 4EZNA 1GNTA 4JNEA 5C5BB 2YLLA 3DPPA 4IW0A 2LXYA 1W9MA 3EJSA 3QNJA 4KIKB 3CZNA 1DKZA 3BUBA 3EJUA 3CVRA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 3HAI A;  2FIC A;  3PLT A;  3LLL A;  1I4T A;  2D1L A;  3HAH A;  3ABH A;  1X04 A;  2RAJ A;  2Z0V A;  1ZWW A;  3QE6 A;  3CAZ A;  5C5B A;  3SOG A;  4DYL A;  1WDZ A;  4I1Q A;  2EFK A;  2Q12 A;  2YKT A;  3Q84 A;  5C5B B;  1X03 A;  4FZS A;  2Q13 A;  2Z0N A;  3QWE A;  4DCN C;  2C08 A;  2V0O A;  4BNE A;  1I4D A;  1I49 A;  4AKV A;  2RAI A;  4ATM A;  1URU A;  3ACO A;  3I2W A;  3DYT A;  3M3W A;  4WPE A;  2X3W A;  1I4L A;  3HAJ A;  4H8S A;  2RAK A;  2ELB A;  3SYV A;  3Q0K A;  2X3V A;  3G9G A;  1Y2O A;  2EFL A;  3OK8 A;  3QNI A;  4NQI A;  4WPC A;  4AVM A;  4NSW A;  2X3X A;  2Z0O A;  2D4C A; 
#chains in the Genus database with same CATH topology
 3DX1 A;  2YLA A;  4EZW A;  3HAH A;  2RAJ A;  2Z8Y A;  2F18 A;  2YI9 A;  4UDX X;  3EJP A;  2YL9 A;  3D51 A;  4H6H A;  1R33 A;  4EZZ A;  4NQI A;  1TQS A;  3BVU A;  2OBM A;  1DKY A;  4EZS A;  3ABH A;  1X04 A;  3B53 X;  1TQT A;  1QWN A;  3L3P A;  3VEB A;  3LVT A;  1HXK A;  3HAJ A;  3G9G A;  4EZV A;  2OZN B;  3GI7 A;  4F01 A;  3BVX A;  3BUI A;  2YL5 A;  1TQU A;  4JL9 A;  3I01 A;  2EFK A;  4JWI A;  1R34 A;  4AZG A;  1QWU A;  4BNE A;  3BUP A;  4EZO A;  1URU A;  3M3W A;  4AZ6 A;  2JNS A;  3CV5 A;  1YWM A;  1I4T A;  3KAV A;  4IM3 A;  4JWC A;  3ER9 B;  3DPO A;  3KDR A;  1R5E A;  3QWE A;  4UDY X;  2GAF D;  3T4A G;  2YI8 A;  3T47 A;  3SYV A;  3D52 A;  2PY6 A;  2RT6 A;  3QA8 A;  4H6I A;  3KAW A;  4E3C A;  2ND0 A;  2F7R A;  2WIN M;  2Q13 A;  4HY9 A;  4IM0 A;  4EZT A;  4JLC A;  2C08 A;  4JN4 A;  4EZX A;  3ACO A;  3D4Y A;  1SU8 A;  4WPE A;  1E9V A;  2YL6 A;  3ER8 C;  2OW7 A;  3BVW A;  1Y2O A;  3B51 X;  3BUD A;  3ERC C;  3DX2 A;  4B9Q A;  3SOG A;  2WYH A;  4I1Q A;  2Q12 A;  1SU6 A;  4FM3 A;  4IWP A;  1DKX A;  3EJT A;  3QNI A;  3BVT A;  4NSW A;  3T49 A;  2PMR A;  4PO2 A;  4R5G A;  3DX4 A;  2D1L A;  4JWE A;  4EZY A;  2Z0V A;  3F7W A;  4NPH A;  5TKY A;  4DYL A;  3O3M B;  2V0O A;  3D4Z A;  3I2W A;  5E84 A;  2O0I 1;  3Q0K A;  3EJQ A;  4HR1 A;  3DDG A;  3HAI A;  1TQV A;  1GNL A;  2QKW A;  4JWD A;  3DX3 A;  1GN9 A;  3I04 A;  1I49 A;  5FLE X;  1I4L A;  2X3V A;  3OWG A;  2F1B A;  4IM2 A;  2X3W A;  2YIV X;  3EJR A;  3O3O B;  3CAZ A;  3C7N A;  2MI7 A;  1X03 A;  3RV0 A;  2YL8 A;  4R5K A;  4AKV A;  4ATM A;  2OO2 A;  2F7O A;  4AZ7 A;  1UPX A;  3BVV A;  4IWO A;  4FZP A;  2WYI A;  2OW6 A;  4HR1 B;  3PLT A;  3A98 A;  3QE6 A;  2N3K A;  3I39 X;  2ALW A;  3LMF A;  4DCN C;  2QXL A;  2ND1 A;  5KBP A;  2LM0 A;  1I4D A;  3RV1 A;  1U00 A;  4G6Q A;  1QX1 A;  4AVM A;  1SU7 A;  4EZP A;  3DDF A;  2KHO A;  3LLL A;  3O3N B;  2ZXQ A;  3D2F A;  1ZYL A;  1E2U A;  4E81 A;  3BUQ A;  4M0M A;  2EWF A;  4AZB A;  2EX3 B;  1MJG A;  2YIA A;  2X3X A;  1OA0 A;  1O7D C;  1PS3 A;  2FIC A;  4AZH A;  3VEA A;  3Q84 A;  2GF4 A;  2GA9 D;  2OBL A;  3B52 X;  3DYT A;  4H8S A;  2NCZ A;  1HTY A;  2YIB A;  1JQK A;  3RPM A;  2Z0O A;  3L3O M;  4AZI A;  4AZC A;  2FYV A;  1E1D A;  2JNK A;  2F7Q A;  4D8J A;  2RAK A;  3CKD A;  2D4C A;  4EZR A;  3OHX M;  4JNF A;  5C5B A;  4AZ5 A;  4EZU A;  2X5C A;  3UIT A;  5FIG A;  2Z0N A;  3BLB A;  2RAI A;  4KIK A;  4IWQ A;  4HYB A;  4FZO A;  2EFL A;  3FD9 A;  4R5I A;  1TQW A;  1O7D B;  4EZQ A;  1LQ7 A;  2F1A A;  3ZED A;  1WDZ A;  4F00 A;  4AZC B;  2YKT A;  3DX0 A;  2F7P A;  4FZS A;  3T48 A;  1SUF A;  3DPQ A;  3VKH A;  2ELB A;  3T46 A;  4WPC A;  3OK8 A;  1OAO A;  4R5L A;  3CZS A;  3D50 A;  1HWW A;  3D2E A;  2QFF A;  1OA1 A;  4R5J A;  1ZWW A;  4EZN A;  1GNT A;  4JNE A;  5C5B B;  2YLL A;  3DPP A;  4IW0 A;  2LXY A;  1W9M A;  3EJS A;  3QNJ A;  4KIK B;  3CZN A;  1DKZ A;  3BUB A;  3EJU A;  3CVR A; 
#chains in the Genus database with same CATH homology
 3HAI A;  2FIC A;  3PLT A;  3LLL A;  1I4T A;  2D1L A;  3HAH A;  3ABH A;  1X04 A;  2RAJ A;  2Z0V A;  1ZWW A;  3QE6 A;  3CAZ A;  5C5B A;  3SOG A;  4DYL A;  1WDZ A;  4I1Q A;  2EFK A;  2Q12 A;  2YKT A;  3Q84 A;  5C5B B;  1X03 A;  4FZS A;  2Q13 A;  2Z0N A;  3QWE A;  4DCN C;  2C08 A;  2V0O A;  4BNE A;  1I4D A;  1I49 A;  4AKV A;  2RAI A;  4ATM A;  1URU A;  3ACO A;  3I2W A;  3DYT A;  3M3W A;  4WPE A;  2X3W A;  1I4L A;  3HAJ A;  4H8S A;  2RAK A;  2ELB A;  3SYV A;  3Q0K A;  2X3V A;  3G9G A;  1Y2O A;  2EFL A;  3OK8 A;  3QNI A;  4NQI A;  4WPC A;  4AVM A;  4NSW A;  2X3X A;  2Z0O A;  2D4C A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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4NQIA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations