5FIGA

Apo-csp3 (copper storage protein 3) from bacillus subtilis
Total Genus 46
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
46
sequence length
105
structure length
100
Chain Sequence
YSEACIEACIDCMKACNHCFTKCLEHLSGCIRLDRECADICALAVKAMQTDSPFMKEICALCADICEACGTECGKHDHDHCQACAKACFTCAEQCRSMAA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Bacterial cytosolic proteins with a high capacity for Cu(I) that protect against copper toxicity.
pubmed doi rcsb
molecule tags Copper-binding protein
molecule keywords CSP3
total genus 46
structure length 100
sequence length 105
chains with identical sequence B, C, D, E, F
ec nomenclature
pdb deposition date 2015-09-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03860 DUF326 Domain of Unknown Function (DUF326)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1270.360 Mainly Alpha Up-down Bundle Substrate Binding Domain Of Dnak; Chain:A; Domain 2 Substrate Binding Domain Of Dnak; Chain:A; Domain 2 5figA00
3KAWA 3KAVA 3LMFA 5FIGA
chains in the Genus database with same CATH superfamily
3RV0A 4HR1B 3BUIA 3ZEDA 4IWOA 2EFKA 4UDYX 1E9VA 1I4DA 1QWNA 3ER8C 4EZTA 3DYTA 3CZSA 3DX4A 4FZSA 1X04A 3DDGA 1URUA 3ERCC 5C5BA 4EZNA 1SU7A 2X3VA 3RPMA 4AKVA 1GNTA 3KDRA 3EJRA 3OK8A 3BVWA 2LM0A 3F7WA 2F1BA 2GF4A 4EZUA 3LVTA 3QNIA 3VKHA 1WDZA 2YLAA 2Q13A 1I49A 1GNLA 5C5BB 3VEBA 3Q0KA 4EZRA 5TKYA 1I4LA 3DX2A 4H8SA 4EZPA 3EJPA 4EZZA 2KHOA 3HAJA 3DDFA 4EZXA 1OA0A 3I04A 1GN9A 4E81A 4AVMA 4AZ6A 4R5LA 2FICA 2FYVA 3LLLA 2Z0NA 2V0OA 3BVXA 4EZQA 2F7RA 3QNJA 3D51A 4WPCA 4DYLA 3CVRA 2JNSA 2O0I1 4JN4A 4HYBA 4R5IA 5E84A 2C08A 4AZBA 2YIVX 3B51X 1TQWA 4JNEA 2EWFA 1SU6A 4H6IA 1JQKA 3ACOA 2RAKA 1SU8A 4EZVA 1YWMA 1Y2OA 3BVTA 4JWEA 3L3PA 1HWWA 1OA1A 3DX0A 3CZNA 2RAJA 2MI7A 3EJQA 3OWGA 3CKDA 4UDXX 4IW0A 2WYIA 4NPHA 2OO2A 2ND0A 1MJGA 3I01A 4EZSA 4FZOA 2RAIA 4IWQA 2LXYA 4H6HA 1O7DB 3OHXM 4JL9A 1PS3A 2YL9A 3BUQA 4EZWA 3C7NA 4NSWA 3DPPA 2OW7A 2YL5A 4KIKA 2YLLA 3KAWA 2YIAA 3QE6A 3LMFA 3CV5A 3D4YA 3ER9B 1DKYA 2OBMA 2YL6A 1W9MA 1TQVA 2OZNB 3A98A 1R34A 3I2WA 1QX1A 1O7DC 3L3OM 3QWEA 4EZOA 2ZXQA 4R5JA 3M3WA 3BVUA 3DPOA 3BVVA 2JNKA 3SOGA 2QKWA 4KIKB 3EJSA 1LQ7A 1I4TA 3G9GA 4E3CA 3EJTA 4PO2A 2WINM 5KBPA 2Z0VA 1UPXA 3T4AG 3D52A 3DX1A 4JWIA 3KAVA 4AZ5A 1ZYLA 2Z8YA 1OAOA 2D1LA 3BUDA 2ND1A 4F01A 3GI7A 1R5EA 3ABHA 2ALWA 1R33A 2F7PA 3FD9A 3D50A 3O3OB 3HAIA 2OBLA 4IM3A 3HAHA 2F7OA 5FLEX 1E2UA 1U00A 3B52X 3PLTA 2F18A 4JLCA 3BUPA 4HY9A 4R5KA 1HXKA 4R5GA 3T46A 4FZPA 3DPQA 1TQSA 4IM2A 2NCZA 1SUFA 3D2EA 4FM3A 4JWCA 3T47A 3D4ZA 4F00A 3DX3A 3D2FA 2N3KA 1TQUA 4AZ7A 3BUBA 3BLBA 3B53X 4NQIA 2EX3B 4IWPA 2D4CA 5FIGA 4D8JA 1HTYA 2PMRA 4ATMA 2YI9A 2YI8A 1E1DA 4AZIA 4B9QA 2X5CA 4AZCA 2OW6A 4M0MA 2GA9D 2YIBA 2X3WA 3O3NB 1X03A 3UITA 2YKTA 3RV1A 4JWDA 4DCNC 2Z0OA 3CAZA 2QFFA 3T48A 2QXLA 1DKZA 4AZCB 2ELBA 4I1QA 3EJUA 4JNFA 1QWUA 2GAFD 1DKXA 4G6QA 2EFLA 4AZHA 3I39X 2PY6A 4BNEA 4IM0A 4HR1A 4EZYA 2X3XA 3QA8A 2RT6A 3Q84A 2Q12A 3VEAA 3O3MB 2YL8A 2F1AA 1TQTA 2F7QA 4WPEA 1ZWWA 2WYHA 3SYVA 3T49A 4AZGA
chains in the Genus database with same CATH topology
5FIGA 4D8JA 4E3CA 2JNSA 3RV0A 4JN4A 4HYBA 4HR1B 4R5IA 4PO2A 5E84A 3ZEDA 2YIVX 4IWOA 3B51X 2WINM 4JNEA 2EWFA 1SU6A 2YI9A 4UDYX 2YI8A 1UPXA 4H6IA 1E9VA 1E1DA 3T4AG 4B9QA 1JQKA 3ER8C 4EZTA 1SU8A 4EZVA 4JWIA 2X5CA 3KAVA 1ZYLA 2Z8YA 4M0MA 4JWEA 2GA9D 2YIBA 1OA1A 3ERCC 1OAOA 3O3NB 3UITA 4EZNA 3OWGA 2ND1A 4F01A 3GI7A 1SU7A 4UDXX 4IW0A 3RV1A 4NPHA 1GNTA 4JWDA 3KDRA 2ND0A 1MJGA 3FD9A 3I01A 4EZSA 2LM0A 3F7WA 2QFFA 3O3OB 2OBLA 4IM3A 4IWQA 4EZUA 4H6HA 3T48A 2QXLA 1DKZA 5FLEX 1E2UA 1U00A 3B52X 3OHXM 3VKHA 4JL9A 4JNFA 4JLCA 4HY9A 2GAFD 1DKXA 4R5KA 1GNLA 4G6QA 3VEBA 4R5GA 4EZWA 4EZRA 3C7NA 5TKYA 3DPPA 3T46A 3I39X 3DPQA 2PY6A 4IM2A 4KIKA 2NCZA 4EZPA 1SUFA 3D2EA 3KAWA 4EZZA 2YIAA 4FM3A 3LMFA 2KHOA 4JWCA 4EZXA 3T47A 4IM0A 1OA0A 4HR1A 3ER9B 1DKYA 3I04A 2OBMA 4EZYA 3QA8A 4F00A 1GN9A 2RT6A 1W9MA 3D2FA 4E81A 3A98A 3VEAA 2N3KA 3L3OM 4R5LA 3O3MB 4EZOA 3B53X 4R5JA 4EZQA 2EX3B 3DPOA 4KIKB 4IWPA 3T49A 3QNJA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3KAW A;  3KAV A;  3LMF A;  5FIG A; 
#chains in the Genus database with same CATH topology
 3RV0 A;  4HR1 B;  3BUI A;  3ZED A;  4IWO A;  2EFK A;  4UDY X;  1E9V A;  1I4D A;  1QWN A;  3ER8 C;  4EZT A;  3DYT A;  3CZS A;  3DX4 A;  4FZS A;  1X04 A;  3DDG A;  1URU A;  3ERC C;  5C5B A;  4EZN A;  1SU7 A;  2X3V A;  3RPM A;  4AKV A;  1GNT A;  3KDR A;  3EJR A;  3OK8 A;  3BVW A;  2LM0 A;  3F7W A;  2F1B A;  2GF4 A;  4EZU A;  3LVT A;  3QNI A;  3VKH A;  1WDZ A;  2YLA A;  2Q13 A;  1I49 A;  1GNL A;  5C5B B;  3VEB A;  3Q0K A;  4EZR A;  5TKY A;  1I4L A;  3DX2 A;  4H8S A;  4EZP A;  3EJP A;  4EZZ A;  2KHO A;  3HAJ A;  3DDF A;  4EZX A;  1OA0 A;  3I04 A;  1GN9 A;  4E81 A;  4AVM A;  4AZ6 A;  4R5L A;  2FIC A;  2FYV A;  3LLL A;  2Z0N A;  2V0O A;  3BVX A;  4EZQ A;  2F7R A;  3QNJ A;  3D51 A;  4WPC A;  4DYL A;  3CVR A;  2JNS A;  2O0I 1;  4JN4 A;  4HYB A;  4R5I A;  5E84 A;  2C08 A;  4AZB A;  2YIV X;  3B51 X;  1TQW A;  4JNE A;  2EWF A;  1SU6 A;  4H6I A;  1JQK A;  3ACO A;  2RAK A;  1SU8 A;  4EZV A;  1YWM A;  1Y2O A;  3BVT A;  4JWE A;  3L3P A;  1HWW A;  1OA1 A;  3DX0 A;  3CZN A;  2RAJ A;  2MI7 A;  3EJQ A;  3OWG A;  3CKD A;  4UDX X;  4IW0 A;  2WYI A;  4NPH A;  2OO2 A;  2ND0 A;  1MJG A;  3I01 A;  4EZS A;  4FZO A;  2RAI A;  4IWQ A;  2LXY A;  4H6H A;  1O7D B;  3OHX M;  4JL9 A;  1PS3 A;  2YL9 A;  3BUQ A;  4EZW A;  3C7N A;  4NSW A;  3DPP A;  2OW7 A;  2YL5 A;  4KIK A;  2YLL A;  3KAW A;  2YIA A;  3QE6 A;  3LMF A;  3CV5 A;  3D4Y A;  3ER9 B;  1DKY A;  2OBM A;  2YL6 A;  1W9M A;  1TQV A;  2OZN B;  3A98 A;  1R34 A;  3I2W A;  1QX1 A;  1O7D C;  3L3O M;  3QWE A;  4EZO A;  2ZXQ A;  4R5J A;  3M3W A;  3BVU A;  3DPO A;  3BVV A;  2JNK A;  3SOG A;  2QKW A;  4KIK B;  3EJS A;  1LQ7 A;  1I4T A;  3G9G A;  4E3C A;  3EJT A;  4PO2 A;  2WIN M;  5KBP A;  2Z0V A;  1UPX A;  3T4A G;  3D52 A;  3DX1 A;  4JWI A;  3KAV A;  4AZ5 A;  1ZYL A;  2Z8Y A;  1OAO A;  2D1L A;  3BUD A;  2ND1 A;  4F01 A;  3GI7 A;  1R5E A;  3ABH A;  2ALW A;  1R33 A;  2F7P A;  3FD9 A;  3D50 A;  3O3O B;  3HAI A;  2OBL A;  4IM3 A;  3HAH A;  2F7O A;  5FLE X;  1E2U A;  1U00 A;  3B52 X;  3PLT A;  2F18 A;  4JLC A;  3BUP A;  4HY9 A;  4R5K A;  1HXK A;  4R5G A;  3T46 A;  4FZP A;  3DPQ A;  1TQS A;  4IM2 A;  2NCZ A;  1SUF A;  3D2E A;  4FM3 A;  4JWC A;  3T47 A;  3D4Z A;  4F00 A;  3DX3 A;  3D2F A;  2N3K A;  1TQU A;  4AZ7 A;  3BUB A;  3BLB A;  3B53 X;  4NQI A;  2EX3 B;  4IWP A;  2D4C A;  5FIG A;  4D8J A;  1HTY A;  2PMR A;  4ATM A;  2YI9 A;  2YI8 A;  1E1D A;  4AZI A;  4B9Q A;  2X5C A;  4AZC A;  2OW6 A;  4M0M A;  2GA9 D;  2YIB A;  2X3W A;  3O3N B;  1X03 A;  3UIT A;  2YKT A;  3RV1 A;  4JWD A;  4DCN C;  2Z0O A;  3CAZ A;  2QFF A;  3T48 A;  2QXL A;  1DKZ A;  4AZC B;  2ELB A;  4I1Q A;  3EJU A;  4JNF A;  1QWU A;  2GAF D;  1DKX A;  4G6Q A;  2EFL A;  4AZH A;  3I39 X;  2PY6 A;  4BNE A;  4IM0 A;  4HR1 A;  4EZY A;  2X3X A;  3QA8 A;  2RT6 A;  3Q84 A;  2Q12 A;  3VEA A;  3O3M B;  2YL8 A;  2F1A A;  1TQT A;  2F7Q A;  4WPE A;  1ZWW A;  2WYH A;  3SYV A;  3T49 A;  4AZG A; 
#chains in the Genus database with same CATH homology
 5FIG A;  4D8J A;  4E3C A;  2JNS A;  3RV0 A;  4JN4 A;  4HYB A;  4HR1 B;  4R5I A;  4PO2 A;  5E84 A;  3ZED A;  2YIV X;  4IWO A;  3B51 X;  2WIN M;  4JNE A;  2EWF A;  1SU6 A;  2YI9 A;  4UDY X;  2YI8 A;  1UPX A;  4H6I A;  1E9V A;  1E1D A;  3T4A G;  4B9Q A;  1JQK A;  3ER8 C;  4EZT A;  1SU8 A;  4EZV A;  4JWI A;  2X5C A;  3KAV A;  1ZYL A;  2Z8Y A;  4M0M A;  4JWE A;  2GA9 D;  2YIB A;  1OA1 A;  3ERC C;  1OAO A;  3O3N B;  3UIT A;  4EZN A;  3OWG A;  2ND1 A;  4F01 A;  3GI7 A;  1SU7 A;  4UDX X;  4IW0 A;  3RV1 A;  4NPH A;  1GNT A;  4JWD A;  3KDR A;  2ND0 A;  1MJG A;  3FD9 A;  3I01 A;  4EZS A;  2LM0 A;  3F7W A;  2QFF A;  3O3O B;  2OBL A;  4IM3 A;  4IWQ A;  4EZU A;  4H6H A;  3T48 A;  2QXL A;  1DKZ A;  5FLE X;  1E2U A;  1U00 A;  3B52 X;  3OHX M;  3VKH A;  4JL9 A;  4JNF A;  4JLC A;  4HY9 A;  2GAF D;  1DKX A;  4R5K A;  1GNL A;  4G6Q A;  3VEB A;  4R5G A;  4EZW A;  4EZR A;  3C7N A;  5TKY A;  3DPP A;  3T46 A;  3I39 X;  3DPQ A;  2PY6 A;  4IM2 A;  4KIK A;  2NCZ A;  4EZP A;  1SUF A;  3D2E A;  3KAW A;  4EZZ A;  2YIA A;  4FM3 A;  3LMF A;  2KHO A;  4JWC A;  4EZX A;  3T47 A;  4IM0 A;  1OA0 A;  4HR1 A;  3ER9 B;  1DKY A;  3I04 A;  2OBM A;  4EZY A;  3QA8 A;  4F00 A;  1GN9 A;  2RT6 A;  1W9M A;  3D2F A;  4E81 A;  3A98 A;  3VEA A;  2N3K A;  3L3O M;  4R5L A;  3O3M B;  4EZO A;  3B53 X;  4R5J A;  4EZQ A;  2EX3 B;  3DPO A;  4KIK B;  4IWP A;  3T49 A;  3QNJ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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