1CDRA

Structure of a soluble, glycosylated form of the human complement regulatory protein cd59
Total Genus 5
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
5
sequence length
77
structure length
77
Chain Sequence
LQCYNCPNPTADCKTAVNCSSDFDACLITKAGLQVYNKCWKFEHCNFNDVTTRLRENELTYYCCKKDLCNFNEQLEN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Complement regulatory protein
molecule keywords CD59
publication title Structure of a soluble, glycosylated form of the human complement regulatory protein CD59.
pubmed doi rcsb
source organism Homo sapiens
total genus 5
structure length 77
sequence length 77
ec nomenclature
pdb deposition date 1994-06-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00021 UPAR_LY6 u-PAR/Ly-6 domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.60.10 Mainly Beta Ribbon CD59 CD59 1cdrA00
4P7UA 2LCRA 1L4WA 2QJ9C 1KC4A 3NH7A 1HC9A 1KBTA 1LXHA 2OFSA 3EVSC 1CVOA 1TXBA 1KTZB 2H8UA 1NYSA 1IDIA 1CXOA 3VTSA 1BXPA 1NORA 1BTEA 2JQPA 2CCXA 2QJBC 1G6MA 2GOOC 1JGKA 1YWHA 1CREA 1CDTA 2QJAC 3KFDI 1CHVS 1PLOA 5IMTD 1TGXA 1HAAA 2H7ZA 1UG4A 3BT2U 1KU6B 1IK8A 1JE9A 5DZ5A 5IMYC 4AEAA 1F8UB 1CTXA 2FD6U 2CRTA 1FFJA 1RL5A 4DO8A 4XJJA 1QKEA 1KBAA 4ZQYA 4BIKB 4EY8B 1MR6A 1FRAA 5DO6A 2L03A 3NEQA 3BT1U 1NTXA 1NYUA 1HC9B 1HAJA 1IDGA 3PLCA 1TFSA 1F94A 1KL8A 2MJ4A 2X8BB 1ONJA 1JBDA 3HH7A 4OM4A 2K3GA 1IJCA 1LX5B 2H64B 2ERAA 3U73U 1CB9A 1CDSA 2CDXA 1ERGA 2UWRA 2MJ0A 1QKDA 1REWC 2CRSA 3ERAA 4LFTA 2LA1A 5DU1A 2PJYB 4OM5A 1IQ9A 2JVEA 4UY2C 3QB4B 1S4YA 2BTXA 1V6PA 2UX2A 2I9BE 4FAOE 2NBTA 1ERAA 2N99A 3LAQU 1CCQA 1CODA 1FSCA 1LXGA 4FAOC 1FF4A 2MFAA 1FSSB 2H64C 2MHYA 1ABTA 1COEA 1MAHF 1CXNA 2PJYC 2BHIA 4QTIU 1H0JA 1ZADA 2H62D 2HLQA 3NDSA 1ES7B 4IYEA 1B41B 1DRSA 2QC1A 3EBXA 2L5SA 1KFHA 1XT3A 1QM7A 1NTNA 1KS6A 1IKCA 2H7ZB 5EBXA 1RGJA 6EBXA 2ABXA 1VB0A 2H5FA 2J8BA 1IDHA 1FASA 1KBSA 1KXIA 3FEVA 1IDLA 1NEAA 1NXBA 4RUDA 3KFDE 1I02A 2MUPA 1CDRA 1CDQA 2VLWA 1M9ZA 2H62C 2HLRA 2MUOA 3U74U 2MJYA 1LJZA 1TXAA 4BDTB 1W6BA 1CRFA 2GOOB 1HOYA 2CTXA 4HQPF 1LSIA
chains in the Genus database with same CATH superfamily
4P7UA 2LCRA 1L4WA 2QJ9C 1KC4A 3NH7A 1HC9A 1KBTA 1LXHA 2OFSA 3EVSC 1CVOA 1TXBA 1KTZB 2H8UA 1NYSA 1IDIA 1CXOA 3VTSA 1BXPA 1NORA 1BTEA 2JQPA 2CCXA 2QJBC 1G6MA 2GOOC 1JGKA 1YWHA 1CREA 1CDTA 2QJAC 3KFDI 1CHVS 1PLOA 5IMTD 1TGXA 1HAAA 2H7ZA 1UG4A 3BT2U 1KU6B 1IK8A 1JE9A 5DZ5A 5IMYC 4AEAA 1F8UB 1CTXA 2FD6U 2CRTA 1FFJA 1RL5A 4KSNA 4DO8A 4XJJA 1QKEA 1KBAA 4ZQYA 4BIKB 4EY8B 1MR6A 1FRAA 5DO6A 2L03A 3NEQA 3BT1U 1NTXA 1NYUA 1HC9B 1HAJA 1IDGA 3PLCA 1TFSA 1F94A 1KL8A 2MJ4A 2X8BB 1ONJA 1JBDA 3HH7A 4OM4A 2K3GA 1IJCA 1LX5B 2H64B 2ERAA 3U73U 1CB9A 1CDSA 2CDXA 1ERGA 2UWRA 2MJ0A 1QKDA 1REWC 2CRSA 3ERAA 4LFTA 2LA1A 5DU1A 2PJYB 4OM5A 1IQ9A 2JVEA 4UY2C 3QB4B 1S4YA 2BTXA 1V6PA 2UX2A 2I9BE 4FAOE 2NBTA 1ERAA 2N99A 3LAQU 1CCQA 1CODA 1FSCA 1LXGA 4FAOC 1FF4A 2MFAA 1FSSB 2H64C 2MHYA 1ABTA 1COEA 1MAHF 1CXNA 2PJYC 2BHIA 4QTIU 1H0JA 1ZADA 2H62D 2HLQA 3NDSA 1ES7B 4IYEA 1B41B 1DRSA 2QC1A 3EBXA 2L5SA 1KFHA 1XT3A 1QM7A 1NTNA 1KS6A 1IKCA 2H7ZB 5EBXA 1RGJA 6EBXA 2ABXA 1VB0A 2H5FA 2J8BA 1IDHA 1FASA 1KBSA 1KXIA 3FEVA 1IDLA 1NEAA 1NXBA 4RUDA 3KFDE 1I02A 2MUPA 1CDRA 1CDQA 2VLWA 1M9ZA 2H62C 2HLRA 2MUOA 3U74U 2MJYA 1LJZA 1TXAA 4BDTB 1W6BA 1CRFA 2GOOB 1HOYA 2CTXA 4HQPF 1LSIA
chains in the Genus database with same CATH topology
4P7UA 2LCRA 1L4WA 2QJ9C 1KC4A 3NH7A 1HC9A 1KBTA 1LXHA 2OFSA 3EVSC 1CVOA 1TXBA 1KTZB 2H8UA 1NYSA 1IDIA 1CXOA 3VTSA 1BXPA 1NORA 1BTEA 2JQPA 2CCXA 2QJBC 1G6MA 2GOOC 1JGKA 1YWHA 1CREA 1CDTA 2QJAC 3KFDI 1CHVS 1PLOA 5IMTD 1TGXA 1HAAA 2H7ZA 1UG4A 3BT2U 1KU6B 1IK8A 1JE9A 5DZ5A 5IMYC 4AEAA 1F8UB 1CTXA 2FD6U 2CRTA 1FFJA 1RL5A 4KSNA 4DO8A 4XJJA 1QKEA 1KBAA 4ZQYA 4BIKB 4EY8B 1MR6A 1FRAA 5DO6A 2L03A 3NEQA 3BT1U 1NTXA 1NYUA 1HC9B 1HAJA 1IDGA 3PLCA 1TFSA 1F94A 1KL8A 2MJ4A 2X8BB 1ONJA 1JBDA 3HH7A 4OM4A 2K3GA 1IJCA 1LX5B 2H64B 2ERAA 3U73U 1CB9A 1CDSA 2CDXA 1ERGA 2UWRA 2MJ0A 1QKDA 1REWC 2CRSA 3ERAA 4LFTA 2LA1A 5DU1A 2PJYB 4OM5A 1IQ9A 2JVEA 4UY2C 3QB4B 1S4YA 2BTXA 1V6PA 2UX2A 2I9BE 4FAOE 2NBTA 1ERAA 2N99A 3LAQU 1CCQA 1CODA 1FSCA 1LXGA 4FAOC 1FF4A 2MFAA 1FSSB 2H64C 2MHYA 1ABTA 1COEA 1MAHF 1CXNA 2PJYC 2BHIA 4QTIU 1H0JA 1ZADA 2H62D 2HLQA 3NDSA 1ES7B 4IYEA 1B41B 1DRSA 2QC1A 3EBXA 2L5SA 1KFHA 1XT3A 1QM7A 1NTNA 1KS6A 1IKCA 2H7ZB 5EBXA 1RGJA 6EBXA 2ABXA 1VB0A 2H5FA 2J8BA 1IDHA 1FASA 1KBSA 1KXIA 3FEVA 1IDLA 1NEAA 1NXBA 4RUDA 3KFDE 1I02A 2MUPA 1CDRA 1CDQA 2VLWA 1M9ZA 2H62C 2HLRA 2MUOA 3U74U 2MJYA 1LJZA 1TXAA 4BDTB 1W6BA 1CRFA 2GOOB 1HOYA 2CTXA 4HQPF 1LSIA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4P7U A;  2LCR A;  1L4W A;  2QJ9 C;  1KC4 A;  3NH7 A;  1HC9 A;  1KBT A;  1LXH A;  2OFS A;  3EVS C;  1CVO A;  1TXB A;  1KTZ B;  2H8U A;  1NYS A;  1IDI A;  1CXO A;  3VTS A;  1BXP A;  1NOR A;  1BTE A;  2JQP A;  2CCX A;  2QJB C;  1G6M A;  2GOO C;  1JGK A;  1YWH A;  1CRE A;  1CDT A;  2QJA C;  3KFD I;  1CHV S;  1PLO A;  5IMT D;  1TGX A;  1HAA A;  2H7Z A;  1UG4 A;  3BT2 U;  1KU6 B;  1IK8 A;  1JE9 A;  5DZ5 A;  5IMY C;  4AEA A;  1F8U B;  1CTX A;  2FD6 U;  2CRT A;  1FFJ A;  1RL5 A;  4DO8 A;  4XJJ A;  1QKE A;  1KBA A;  4ZQY A;  4BIK B;  4EY8 B;  1MR6 A;  1FRA A;  5DO6 A;  2L03 A;  3NEQ A;  3BT1 U;  1NTX A;  1NYU A;  1HC9 B;  1HAJ A;  1IDG A;  3PLC A;  1TFS A;  1F94 A;  1KL8 A;  2MJ4 A;  2X8B B;  1ONJ A;  1JBD A;  3HH7 A;  4OM4 A;  2K3G A;  1IJC A;  1LX5 B;  2H64 B;  2ERA A;  3U73 U;  1CB9 A;  1CDS A;  2CDX A;  1ERG A;  2UWR A;  2MJ0 A;  1QKD A;  1REW C;  2CRS A;  3ERA A;  4LFT A;  2LA1 A;  5DU1 A;  2PJY B;  4OM5 A;  1IQ9 A;  2JVE A;  4UY2 C;  3QB4 B;  1S4Y A;  2BTX A;  1V6P A;  2UX2 A;  2I9B E;  4FAO E;  2NBT A;  1ERA A;  2N99 A;  3LAQ U;  1CCQ A;  1COD A;  1FSC A;  1LXG A;  4FAO C;  1FF4 A;  2MFA A;  1FSS B;  2H64 C;  2MHY A;  1ABT A;  1COE A;  1MAH F;  1CXN A;  2PJY C;  2BHI A;  4QTI U;  1H0J A;  1ZAD A;  2H62 D;  2HLQ A;  3NDS A;  1ES7 B;  4IYE A;  1B41 B;  1DRS A;  2QC1 A;  3EBX A;  2L5S A;  1KFH A;  1XT3 A;  1QM7 A;  1NTN A;  1KS6 A;  1IKC A;  2H7Z B;  5EBX A;  1RGJ A;  6EBX A;  2ABX A;  1VB0 A;  2H5F A;  2J8B A;  1IDH A;  1FAS A;  1KBS A;  1KXI A;  3FEV A;  1IDL A;  1NEA A;  1NXB A;  4RUD A;  3KFD E;  1I02 A;  2MUP A;  1CDR A;  1CDQ A;  2VLW A;  1M9Z A;  2H62 C;  2HLR A;  2MUO A;  3U74 U;  2MJY A;  1LJZ A;  1TXA A;  4BDT B;  1W6B A;  1CRF A;  2GOO B;  1HOY A;  2CTX A;  4HQP F;  1LSI A; 
#chains in the Genus database with same CATH topology
 4P7U A;  2LCR A;  1L4W A;  2QJ9 C;  1KC4 A;  3NH7 A;  1HC9 A;  1KBT A;  1LXH A;  2OFS A;  3EVS C;  1CVO A;  1TXB A;  1KTZ B;  2H8U A;  1NYS A;  1IDI A;  1CXO A;  3VTS A;  1BXP A;  1NOR A;  1BTE A;  2JQP A;  2CCX A;  2QJB C;  1G6M A;  2GOO C;  1JGK A;  1YWH A;  1CRE A;  1CDT A;  2QJA C;  3KFD I;  1CHV S;  1PLO A;  5IMT D;  1TGX A;  1HAA A;  2H7Z A;  1UG4 A;  3BT2 U;  1KU6 B;  1IK8 A;  1JE9 A;  5DZ5 A;  5IMY C;  4AEA A;  1F8U B;  1CTX A;  2FD6 U;  2CRT A;  1FFJ A;  1RL5 A;  4KSN A;  4DO8 A;  4XJJ A;  1QKE A;  1KBA A;  4ZQY A;  4BIK B;  4EY8 B;  1MR6 A;  1FRA A;  5DO6 A;  2L03 A;  3NEQ A;  3BT1 U;  1NTX A;  1NYU A;  1HC9 B;  1HAJ A;  1IDG A;  3PLC A;  1TFS A;  1F94 A;  1KL8 A;  2MJ4 A;  2X8B B;  1ONJ A;  1JBD A;  3HH7 A;  4OM4 A;  2K3G A;  1IJC A;  1LX5 B;  2H64 B;  2ERA A;  3U73 U;  1CB9 A;  1CDS A;  2CDX A;  1ERG A;  2UWR A;  2MJ0 A;  1QKD A;  1REW C;  2CRS A;  3ERA A;  4LFT A;  2LA1 A;  5DU1 A;  2PJY B;  4OM5 A;  1IQ9 A;  2JVE A;  4UY2 C;  3QB4 B;  1S4Y A;  2BTX A;  1V6P A;  2UX2 A;  2I9B E;  4FAO E;  2NBT A;  1ERA A;  2N99 A;  3LAQ U;  1CCQ A;  1COD A;  1FSC A;  1LXG A;  4FAO C;  1FF4 A;  2MFA A;  1FSS B;  2H64 C;  2MHY A;  1ABT A;  1COE A;  1MAH F;  1CXN A;  2PJY C;  2BHI A;  4QTI U;  1H0J A;  1ZAD A;  2H62 D;  2HLQ A;  3NDS A;  1ES7 B;  4IYE A;  1B41 B;  1DRS A;  2QC1 A;  3EBX A;  2L5S A;  1KFH A;  1XT3 A;  1QM7 A;  1NTN A;  1KS6 A;  1IKC A;  2H7Z B;  5EBX A;  1RGJ A;  6EBX A;  2ABX A;  1VB0 A;  2H5F A;  2J8B A;  1IDH A;  1FAS A;  1KBS A;  1KXI A;  3FEV A;  1IDL A;  1NEA A;  1NXB A;  4RUD A;  3KFD E;  1I02 A;  2MUP A;  1CDR A;  1CDQ A;  2VLW A;  1M9Z A;  2H62 C;  2HLR A;  2MUO A;  3U74 U;  2MJY A;  1LJZ A;  1TXA A;  4BDT B;  1W6B A;  1CRF A;  2GOO B;  1HOY A;  2CTX A;  4HQP F;  1LSI A; 
#chains in the Genus database with same CATH homology
 4P7U A;  2LCR A;  1L4W A;  2QJ9 C;  1KC4 A;  3NH7 A;  1HC9 A;  1KBT A;  1LXH A;  2OFS A;  3EVS C;  1CVO A;  1TXB A;  1KTZ B;  2H8U A;  1NYS A;  1IDI A;  1CXO A;  3VTS A;  1BXP A;  1NOR A;  1BTE A;  2JQP A;  2CCX A;  2QJB C;  1G6M A;  2GOO C;  1JGK A;  1YWH A;  1CRE A;  1CDT A;  2QJA C;  3KFD I;  1CHV S;  1PLO A;  5IMT D;  1TGX A;  1HAA A;  2H7Z A;  1UG4 A;  3BT2 U;  1KU6 B;  1IK8 A;  1JE9 A;  5DZ5 A;  5IMY C;  4AEA A;  1F8U B;  1CTX A;  2FD6 U;  2CRT A;  1FFJ A;  1RL5 A;  4KSN A;  4DO8 A;  4XJJ A;  1QKE A;  1KBA A;  4ZQY A;  4BIK B;  4EY8 B;  1MR6 A;  1FRA A;  5DO6 A;  2L03 A;  3NEQ A;  3BT1 U;  1NTX A;  1NYU A;  1HC9 B;  1HAJ A;  1IDG A;  3PLC A;  1TFS A;  1F94 A;  1KL8 A;  2MJ4 A;  2X8B B;  1ONJ A;  1JBD A;  3HH7 A;  4OM4 A;  2K3G A;  1IJC A;  1LX5 B;  2H64 B;  2ERA A;  3U73 U;  1CB9 A;  1CDS A;  2CDX A;  1ERG A;  2UWR A;  2MJ0 A;  1QKD A;  1REW C;  2CRS A;  3ERA A;  4LFT A;  2LA1 A;  5DU1 A;  2PJY B;  4OM5 A;  1IQ9 A;  2JVE A;  4UY2 C;  3QB4 B;  1S4Y A;  2BTX A;  1V6P A;  2UX2 A;  2I9B E;  4FAO E;  2NBT A;  1ERA A;  2N99 A;  3LAQ U;  1CCQ A;  1COD A;  1FSC A;  1LXG A;  4FAO C;  1FF4 A;  2MFA A;  1FSS B;  2H64 C;  2MHY A;  1ABT A;  1COE A;  1MAH F;  1CXN A;  2PJY C;  2BHI A;  4QTI U;  1H0J A;  1ZAD A;  2H62 D;  2HLQ A;  3NDS A;  1ES7 B;  4IYE A;  1B41 B;  1DRS A;  2QC1 A;  3EBX A;  2L5S A;  1KFH A;  1XT3 A;  1QM7 A;  1NTN A;  1KS6 A;  1IKC A;  2H7Z B;  5EBX A;  1RGJ A;  6EBX A;  2ABX A;  1VB0 A;  2H5F A;  2J8B A;  1IDH A;  1FAS A;  1KBS A;  1KXI A;  3FEV A;  1IDL A;  1NEA A;  1NXB A;  4RUD A;  3KFD E;  1I02 A;  2MUP A;  1CDR A;  1CDQ A;  2VLW A;  1M9Z A;  2H62 C;  2HLR A;  2MUO A;  3U74 U;  2MJY A;  1LJZ A;  1TXA A;  4BDT B;  1W6B A;  1CRF A;  2GOO B;  1HOY A;  2CTX A;  4HQP F;  1LSI A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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