4OM5A

Crystal structure of ctx a4 from taiwan cobra (naja naja atra)
Total Genus 9
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
9
sequence length
60
structure length
60
Chain Sequence
RKCNKLVPLFYKTCPAGKNLCYKMFMVSNLTVPVKRGCIDVCPKNSALVKYVCCNTDRCN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Toxin
molecule keywords Cytotoxin 4
publication title Endocytotic Routes of Cobra Cardiotoxins Depend on Spatial Distribution of Positively Charged and Hydrophobic Domains to Target Distinct Types of Sulfated Glycoconjugates on Cell Surface.
pubmed doi rcsb
total genus 9
structure length 60
sequence length 60
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2014-01-26
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.60.10 Mainly Beta Ribbon CD59 CD59 4om5A00
1KS6A 2H5FA 2MUOA 2X8BB 2JQPA 1CTXA 1KFHA 1ES7B 1KXIA 1REWC 1L4WA 3VTSA 1LJZA 2GOOB 1CHVS 1I02A 1VB0A 3PLCA 5IMTD 2FD6U 3BT2U 1FSSB 1S4YA 3HH7A 1FASA 2LA1A 3KFDI 3EBXA 3LAQU 1H0JA 5DO6A 1IK8A 1LXGA 1ERAA 1QKEA 4RUDA 2OFSA 1IJCA 1NYUA 1TFSA 2N99A 3KFDE 4DO8A 3ERAA 1ABTA 3EVSC 3BT1U 2L5SA 2MJ0A 1PLOA 2PJYB 1IQ9A 1G6MA 4HQPF 2PJYC 1TXBA 6EBXA 5DU1A 2CRSA 1CDSA 5IMYC 1HAAA 1IDGA 2H64C 4IYEA 3U74U 1JGKA 2H7ZA 1MR6A 1BTEA 1KTZB 2ERAA 1RL5A 1RGJA 1B41B 1TXAA 1HOYA 4AEAA 4OM5A 1ZADA 2HLQA 2L03A 1NEAA 2VLWA 2H8UA 4EY8B 1HC9B 1NORA 1IDIA 4P7UA 1COEA 1CVOA 4FAOE 2MUPA 2MHYA 1FFJA 1IKCA 1CREA 4BDTB 1CRFA 1W6BA 2CTXA 3NEQA 4OM4A 1LX5B 1CODA 2CDXA 1IDLA 2H64B 2BHIA 1LXHA 3U73U 1KBTA 2HLRA 3FEVA 4BIKB 1F8UB 1HAJA 1KBAA 1MAHF 1CXOA 2K3GA 1CDTA 2JVEA 3QB4B 5EBXA 1TGXA 4ZQYA 3NDSA 2UX2A 2QC1A 4UY2C 1YWHA 1M9ZA 4XJJA 1UG4A 2CRTA 2MJYA 1KBSA 1QKDA 2QJAC 2H62C 1CDRA 1NYSA 1LSIA 1KU6B 1QM7A 4FAOC 1FF4A 1CDQA 1NXBA 2H62D 1IDHA 2BTXA 2NBTA 2I9BE 2J8BA 2GOOC 1V6PA 1KL8A 5DZ5A 1FRAA 1FSCA 1HC9A 1NTNA 1JE9A 1DRSA 2LCRA 1XT3A 1ONJA 4LFTA 2H7ZB 2ABXA 3NH7A 2UWRA 1F94A 1JBDA 2MFAA 2MJ4A 1KC4A 1ERGA 4QTIU 1NTXA 2QJ9C 1CB9A 1CXNA 2CCXA 1BXPA 1CCQA 2QJBC
chains in the Genus database with same CATH superfamily
1KS6A 2H5FA 2MUOA 2X8BB 2JQPA 1CTXA 1KFHA 1ES7B 1KXIA 1REWC 1L4WA 3VTSA 1LJZA 2GOOB 1CHVS 1I02A 1VB0A 3PLCA 5IMTD 2FD6U 3BT2U 1FSSB 1S4YA 3HH7A 1FASA 2LA1A 3KFDI 3EBXA 3LAQU 1H0JA 5DO6A 1IK8A 1LXGA 1ERAA 1QKEA 4RUDA 2OFSA 1IJCA 1NYUA 1TFSA 2N99A 3KFDE 4DO8A 3ERAA 1ABTA 3EVSC 3BT1U 2L5SA 2MJ0A 1PLOA 2PJYB 1IQ9A 1G6MA 4HQPF 2PJYC 1TXBA 6EBXA 5DU1A 2CRSA 1CDSA 5IMYC 1HAAA 1IDGA 2H64C 4IYEA 3U74U 1JGKA 2H7ZA 1MR6A 1BTEA 1KTZB 2ERAA 1RL5A 1RGJA 1B41B 1TXAA 1HOYA 4AEAA 4OM5A 1ZADA 2HLQA 2L03A 1NEAA 2VLWA 2H8UA 4EY8B 1HC9B 1NORA 1IDIA 4P7UA 1COEA 1CVOA 4FAOE 2MUPA 2MHYA 1FFJA 1IKCA 1CREA 4BDTB 1CRFA 1W6BA 2CTXA 3NEQA 4OM4A 1LX5B 1CODA 2CDXA 1IDLA 2H64B 2BHIA 1LXHA 3U73U 1KBTA 2HLRA 3FEVA 4BIKB 1F8UB 1HAJA 1KBAA 1MAHF 1CXOA 2K3GA 1CDTA 2JVEA 3QB4B 4KSNA 5EBXA 1TGXA 4ZQYA 3NDSA 2UX2A 2QC1A 4UY2C 1YWHA 1M9ZA 4XJJA 1UG4A 2CRTA 2MJYA 1KBSA 1QKDA 2QJAC 2H62C 1CDRA 1NYSA 1LSIA 1KU6B 1QM7A 4FAOC 1FF4A 1CDQA 1NXBA 2H62D 1IDHA 2BTXA 2NBTA 2I9BE 2J8BA 2GOOC 1V6PA 1KL8A 5DZ5A 1FRAA 1FSCA 1HC9A 1NTNA 1JE9A 1DRSA 2LCRA 1XT3A 1ONJA 4LFTA 2H7ZB 2ABXA 3NH7A 2UWRA 1F94A 1JBDA 2MFAA 2MJ4A 1KC4A 1ERGA 4QTIU 1NTXA 2QJ9C 1CB9A 1CXNA 2CCXA 1BXPA 1CCQA 2QJBC
chains in the Genus database with same CATH topology
1KS6A 2H5FA 2MUOA 2X8BB 2JQPA 1CTXA 1KFHA 1ES7B 1KXIA 1REWC 1L4WA 3VTSA 1LJZA 2GOOB 1CHVS 1I02A 1VB0A 3PLCA 5IMTD 2FD6U 3BT2U 1FSSB 1S4YA 3HH7A 1FASA 2LA1A 3KFDI 3EBXA 3LAQU 1H0JA 5DO6A 1IK8A 1LXGA 1ERAA 1QKEA 4RUDA 2OFSA 1IJCA 1NYUA 1TFSA 2N99A 3KFDE 4DO8A 3ERAA 1ABTA 3EVSC 3BT1U 2L5SA 2MJ0A 1PLOA 2PJYB 1IQ9A 1G6MA 4HQPF 2PJYC 1TXBA 6EBXA 5DU1A 2CRSA 1CDSA 5IMYC 1HAAA 1IDGA 2H64C 4IYEA 3U74U 1JGKA 2H7ZA 1MR6A 1BTEA 1KTZB 2ERAA 1RL5A 1RGJA 1B41B 1TXAA 1HOYA 4AEAA 4OM5A 1ZADA 2HLQA 2L03A 1NEAA 2VLWA 2H8UA 4EY8B 1HC9B 1NORA 1IDIA 4P7UA 1COEA 1CVOA 4FAOE 2MUPA 2MHYA 1FFJA 1IKCA 1CREA 4BDTB 1CRFA 1W6BA 2CTXA 3NEQA 4OM4A 1LX5B 1CODA 2CDXA 1IDLA 2H64B 2BHIA 1LXHA 3U73U 1KBTA 2HLRA 3FEVA 4BIKB 1F8UB 1HAJA 1KBAA 1MAHF 1CXOA 2K3GA 1CDTA 2JVEA 3QB4B 4KSNA 5EBXA 1TGXA 4ZQYA 3NDSA 2UX2A 2QC1A 4UY2C 1YWHA 1M9ZA 4XJJA 1UG4A 2CRTA 2MJYA 1KBSA 1QKDA 2QJAC 2H62C 1CDRA 1NYSA 1LSIA 1KU6B 1QM7A 4FAOC 1FF4A 1CDQA 1NXBA 2H62D 1IDHA 2BTXA 2NBTA 2I9BE 2J8BA 2GOOC 1V6PA 1KL8A 5DZ5A 1FRAA 1FSCA 1HC9A 1NTNA 1JE9A 1DRSA 2LCRA 1XT3A 1ONJA 4LFTA 2H7ZB 2ABXA 3NH7A 2UWRA 1F94A 1JBDA 2MFAA 2MJ4A 1KC4A 1ERGA 4QTIU 1NTXA 2QJ9C 1CB9A 1CXNA 2CCXA 1BXPA 1CCQA 2QJBC
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1KS6 A;  2H5F A;  2MUO A;  2X8B B;  2JQP A;  1CTX A;  1KFH A;  1ES7 B;  1KXI A;  1REW C;  1L4W A;  3VTS A;  1LJZ A;  2GOO B;  1CHV S;  1I02 A;  1VB0 A;  3PLC A;  5IMT D;  2FD6 U;  3BT2 U;  1FSS B;  1S4Y A;  3HH7 A;  1FAS A;  2LA1 A;  3KFD I;  3EBX A;  3LAQ U;  1H0J A;  5DO6 A;  1IK8 A;  1LXG A;  1ERA A;  1QKE A;  4RUD A;  2OFS A;  1IJC A;  1NYU A;  1TFS A;  2N99 A;  3KFD E;  4DO8 A;  3ERA A;  1ABT A;  3EVS C;  3BT1 U;  2L5S A;  2MJ0 A;  1PLO A;  2PJY B;  1IQ9 A;  1G6M A;  4HQP F;  2PJY C;  1TXB A;  6EBX A;  5DU1 A;  2CRS A;  1CDS A;  5IMY C;  1HAA A;  1IDG A;  2H64 C;  4IYE A;  3U74 U;  1JGK A;  2H7Z A;  1MR6 A;  1BTE A;  1KTZ B;  2ERA A;  1RL5 A;  1RGJ A;  1B41 B;  1TXA A;  1HOY A;  4AEA A;  4OM5 A;  1ZAD A;  2HLQ A;  2L03 A;  1NEA A;  2VLW A;  2H8U A;  4EY8 B;  1HC9 B;  1NOR A;  1IDI A;  4P7U A;  1COE A;  1CVO A;  4FAO E;  2MUP A;  2MHY A;  1FFJ A;  1IKC A;  1CRE A;  4BDT B;  1CRF A;  1W6B A;  2CTX A;  3NEQ A;  4OM4 A;  1LX5 B;  1COD A;  2CDX A;  1IDL A;  2H64 B;  2BHI A;  1LXH A;  3U73 U;  1KBT A;  2HLR A;  3FEV A;  4BIK B;  1F8U B;  1HAJ A;  1KBA A;  1MAH F;  1CXO A;  2K3G A;  1CDT A;  2JVE A;  3QB4 B;  5EBX A;  1TGX A;  4ZQY A;  3NDS A;  2UX2 A;  2QC1 A;  4UY2 C;  1YWH A;  1M9Z A;  4XJJ A;  1UG4 A;  2CRT A;  2MJY A;  1KBS A;  1QKD A;  2QJA C;  2H62 C;  1CDR A;  1NYS A;  1LSI A;  1KU6 B;  1QM7 A;  4FAO C;  1FF4 A;  1CDQ A;  1NXB A;  2H62 D;  1IDH A;  2BTX A;  2NBT A;  2I9B E;  2J8B A;  2GOO C;  1V6P A;  1KL8 A;  5DZ5 A;  1FRA A;  1FSC A;  1HC9 A;  1NTN A;  1JE9 A;  1DRS A;  2LCR A;  1XT3 A;  1ONJ A;  4LFT A;  2H7Z B;  2ABX A;  3NH7 A;  2UWR A;  1F94 A;  1JBD A;  2MFA A;  2MJ4 A;  1KC4 A;  1ERG A;  4QTI U;  1NTX A;  2QJ9 C;  1CB9 A;  1CXN A;  2CCX A;  1BXP A;  1CCQ A;  2QJB C; 
#chains in the Genus database with same CATH topology
 1KS6 A;  2H5F A;  2MUO A;  2X8B B;  2JQP A;  1CTX A;  1KFH A;  1ES7 B;  1KXI A;  1REW C;  1L4W A;  3VTS A;  1LJZ A;  2GOO B;  1CHV S;  1I02 A;  1VB0 A;  3PLC A;  5IMT D;  2FD6 U;  3BT2 U;  1FSS B;  1S4Y A;  3HH7 A;  1FAS A;  2LA1 A;  3KFD I;  3EBX A;  3LAQ U;  1H0J A;  5DO6 A;  1IK8 A;  1LXG A;  1ERA A;  1QKE A;  4RUD A;  2OFS A;  1IJC A;  1NYU A;  1TFS A;  2N99 A;  3KFD E;  4DO8 A;  3ERA A;  1ABT A;  3EVS C;  3BT1 U;  2L5S A;  2MJ0 A;  1PLO A;  2PJY B;  1IQ9 A;  1G6M A;  4HQP F;  2PJY C;  1TXB A;  6EBX A;  5DU1 A;  2CRS A;  1CDS A;  5IMY C;  1HAA A;  1IDG A;  2H64 C;  4IYE A;  3U74 U;  1JGK A;  2H7Z A;  1MR6 A;  1BTE A;  1KTZ B;  2ERA A;  1RL5 A;  1RGJ A;  1B41 B;  1TXA A;  1HOY A;  4AEA A;  4OM5 A;  1ZAD A;  2HLQ A;  2L03 A;  1NEA A;  2VLW A;  2H8U A;  4EY8 B;  1HC9 B;  1NOR A;  1IDI A;  4P7U A;  1COE A;  1CVO A;  4FAO E;  2MUP A;  2MHY A;  1FFJ A;  1IKC A;  1CRE A;  4BDT B;  1CRF A;  1W6B A;  2CTX A;  3NEQ A;  4OM4 A;  1LX5 B;  1COD A;  2CDX A;  1IDL A;  2H64 B;  2BHI A;  1LXH A;  3U73 U;  1KBT A;  2HLR A;  3FEV A;  4BIK B;  1F8U B;  1HAJ A;  1KBA A;  1MAH F;  1CXO A;  2K3G A;  1CDT A;  2JVE A;  3QB4 B;  4KSN A;  5EBX A;  1TGX A;  4ZQY A;  3NDS A;  2UX2 A;  2QC1 A;  4UY2 C;  1YWH A;  1M9Z A;  4XJJ A;  1UG4 A;  2CRT A;  2MJY A;  1KBS A;  1QKD A;  2QJA C;  2H62 C;  1CDR A;  1NYS A;  1LSI A;  1KU6 B;  1QM7 A;  4FAO C;  1FF4 A;  1CDQ A;  1NXB A;  2H62 D;  1IDH A;  2BTX A;  2NBT A;  2I9B E;  2J8B A;  2GOO C;  1V6P A;  1KL8 A;  5DZ5 A;  1FRA A;  1FSC A;  1HC9 A;  1NTN A;  1JE9 A;  1DRS A;  2LCR A;  1XT3 A;  1ONJ A;  4LFT A;  2H7Z B;  2ABX A;  3NH7 A;  2UWR A;  1F94 A;  1JBD A;  2MFA A;  2MJ4 A;  1KC4 A;  1ERG A;  4QTI U;  1NTX A;  2QJ9 C;  1CB9 A;  1CXN A;  2CCX A;  1BXP A;  1CCQ A;  2QJB C; 
#chains in the Genus database with same CATH homology
 1KS6 A;  2H5F A;  2MUO A;  2X8B B;  2JQP A;  1CTX A;  1KFH A;  1ES7 B;  1KXI A;  1REW C;  1L4W A;  3VTS A;  1LJZ A;  2GOO B;  1CHV S;  1I02 A;  1VB0 A;  3PLC A;  5IMT D;  2FD6 U;  3BT2 U;  1FSS B;  1S4Y A;  3HH7 A;  1FAS A;  2LA1 A;  3KFD I;  3EBX A;  3LAQ U;  1H0J A;  5DO6 A;  1IK8 A;  1LXG A;  1ERA A;  1QKE A;  4RUD A;  2OFS A;  1IJC A;  1NYU A;  1TFS A;  2N99 A;  3KFD E;  4DO8 A;  3ERA A;  1ABT A;  3EVS C;  3BT1 U;  2L5S A;  2MJ0 A;  1PLO A;  2PJY B;  1IQ9 A;  1G6M A;  4HQP F;  2PJY C;  1TXB A;  6EBX A;  5DU1 A;  2CRS A;  1CDS A;  5IMY C;  1HAA A;  1IDG A;  2H64 C;  4IYE A;  3U74 U;  1JGK A;  2H7Z A;  1MR6 A;  1BTE A;  1KTZ B;  2ERA A;  1RL5 A;  1RGJ A;  1B41 B;  1TXA A;  1HOY A;  4AEA A;  4OM5 A;  1ZAD A;  2HLQ A;  2L03 A;  1NEA A;  2VLW A;  2H8U A;  4EY8 B;  1HC9 B;  1NOR A;  1IDI A;  4P7U A;  1COE A;  1CVO A;  4FAO E;  2MUP A;  2MHY A;  1FFJ A;  1IKC A;  1CRE A;  4BDT B;  1CRF A;  1W6B A;  2CTX A;  3NEQ A;  4OM4 A;  1LX5 B;  1COD A;  2CDX A;  1IDL A;  2H64 B;  2BHI A;  1LXH A;  3U73 U;  1KBT A;  2HLR A;  3FEV A;  4BIK B;  1F8U B;  1HAJ A;  1KBA A;  1MAH F;  1CXO A;  2K3G A;  1CDT A;  2JVE A;  3QB4 B;  4KSN A;  5EBX A;  1TGX A;  4ZQY A;  3NDS A;  2UX2 A;  2QC1 A;  4UY2 C;  1YWH A;  1M9Z A;  4XJJ A;  1UG4 A;  2CRT A;  2MJY A;  1KBS A;  1QKD A;  2QJA C;  2H62 C;  1CDR A;  1NYS A;  1LSI A;  1KU6 B;  1QM7 A;  4FAO C;  1FF4 A;  1CDQ A;  1NXB A;  2H62 D;  1IDH A;  2BTX A;  2NBT A;  2I9B E;  2J8B A;  2GOO C;  1V6P A;  1KL8 A;  5DZ5 A;  1FRA A;  1FSC A;  1HC9 A;  1NTN A;  1JE9 A;  1DRS A;  2LCR A;  1XT3 A;  1ONJ A;  4LFT A;  2H7Z B;  2ABX A;  3NH7 A;  2UWR A;  1F94 A;  1JBD A;  2MFA A;  2MJ4 A;  1KC4 A;  1ERG A;  4QTI U;  1NTX A;  2QJ9 C;  1CB9 A;  1CXN A;  2CCX A;  1BXP A;  1CCQ A;  2QJB C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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