4OM5A

Crystal structure of ctx a4 from taiwan cobra (naja naja atra)
Total Genus 9
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
9
sequence length
60
structure length
60
Chain Sequence
RKCNKLVPLFYKTCPAGKNLCYKMFMVSNLTVPVKRGCIDVCPKNSALVKYVCCNTDRCN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Toxin
molecule keywords Cytotoxin 4
publication title Endocytotic Routes of Cobra Cardiotoxins Depend on Spatial Distribution of Positively Charged and Hydrophobic Domains to Target Distinct Types of Sulfated Glycoconjugates on Cell Surface.
pubmed doi rcsb
total genus 9
structure length 60
sequence length 60
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2014-01-26
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.60.10 Mainly Beta Ribbon CD59 CD59 4om5A00
3PLCA 4BIKB 1L4WA 2X8BB 1ONJA 1CCQA 1KTZB 2GOOB 1NTXA 1NEAA 2MUOA 1KL8A 2JQPA 1KC4A 1IJCA 2CDXA 2L03A 3VTSA 3HH7A 1JE9A 1LSIA 1JGKA 1CDSA 2GOOC 1HOYA 2J8BA 1F94A 1IDHA 4ZQYA 2K3GA 1FSCA 2L5SA 1CXOA 1MR6A 3NH7A 2MHYA 1COEA 1TXBA 2I9BE 1KBTA 1NYUA 2LA1A 2OFSA 4P7UA 1XT3A 1IQ9A 2VLWA 1REWC 2FD6U 3FEVA 3U73U 2MJYA 1ERGA 1QKEA 4AEAA 1HC9B 1KBAA 1B41B 2QJAC 1HAAA 1KBSA 1H0JA 3EVSC 3LAQU 1YWHA 1ABTA 2JVEA 5IMTD 1CVOA 3BT1U 1KFHA 1M9ZA 4OM4A 1FRAA 2MJ4A 2QC1A 3QB4B 2QJBC 2ERAA 2PJYC 3BT2U 2H7ZB 1NORA 1BXPA 2N99A 1FF4A 1MAHF 2H62C 2NBTA 1KS6A 1CDRA 1ZADA 6EBXA 2HLRA 1CXNA 2H8UA 2QJ9C 5DZ5A 2MFAA 1G6MA 2BHIA 1ES7B 2CRSA 4EY8B 2LCRA 2CRTA 2MUPA 1IDGA 4XJJA 3KFDI 2HLQA 1V6PA 4FAOE 5IMYC 1CRFA 1IDLA 1KXIA 1TGXA 2PJYB 1TXAA 1PLOA 1CB9A 1ERAA 5DU1A 1IK8A 1QKDA 4RUDA 4OM5A 1HC9A 3EBXA 1CDQA 2ABXA 1CREA 1NYSA 1RGJA 1W6BA 3NDSA 1FSSB 2BTXA 2CCXA 3ERAA 1KU6B 1LX5B 1LXHA 5DO6A 1IKCA 2H5FA 2MJ0A 3KFDE 2H64B 1CTXA 4QTIU 1S4YA 2H7ZA 1LJZA 1HAJA 1BTEA 1CDTA 2UX2A 4BDTB 5EBXA 2CTXA 4HQPF 1CODA 1TFSA 4DO8A 1F8UB 1FFJA 1JBDA 1I02A 1QM7A 1UG4A 2H64C 4UY2C 3U74U 1NTNA 4LFTA 1RL5A 1VB0A 3NEQA 4FAOC 1NXBA 4IYEA 1CHVS 1LXGA 1DRSA 1FASA 1IDIA 2H62D 2UWRA
chains in the Genus database with same CATH superfamily
3PLCA 4BIKB 1L4WA 2X8BB 1ONJA 1CCQA 1KTZB 2GOOB 1NTXA 1NEAA 2MUOA 1KL8A 2JQPA 1KC4A 1IJCA 2CDXA 2L03A 3VTSA 3HH7A 1JE9A 1LSIA 1JGKA 1CDSA 2GOOC 1HOYA 2J8BA 1F94A 1IDHA 4ZQYA 2K3GA 1FSCA 2L5SA 1CXOA 1MR6A 3NH7A 2MHYA 1COEA 1TXBA 2I9BE 1KBTA 1NYUA 2LA1A 2OFSA 4P7UA 1XT3A 1IQ9A 2VLWA 1REWC 2FD6U 3FEVA 3U73U 2MJYA 1ERGA 1QKEA 4AEAA 1HC9B 1KBAA 1B41B 2QJAC 1HAAA 1KBSA 1H0JA 3EVSC 3LAQU 1YWHA 1ABTA 2JVEA 5IMTD 1CVOA 3BT1U 1KFHA 1M9ZA 4OM4A 1FRAA 4KSNA 2MJ4A 2QC1A 3QB4B 2QJBC 2ERAA 2PJYC 3BT2U 2H7ZB 1NORA 1BXPA 2N99A 1FF4A 1MAHF 2H62C 2NBTA 1KS6A 1CDRA 1ZADA 6EBXA 2HLRA 1CXNA 2H8UA 2QJ9C 5DZ5A 2MFAA 1G6MA 2BHIA 1ES7B 2CRSA 4EY8B 2LCRA 2CRTA 2MUPA 1IDGA 4XJJA 3KFDI 2HLQA 1V6PA 4FAOE 5IMYC 1CRFA 1IDLA 1KXIA 1TGXA 2PJYB 1TXAA 1PLOA 1CB9A 1ERAA 5DU1A 1IK8A 1QKDA 4RUDA 4OM5A 1HC9A 3EBXA 1CDQA 2ABXA 1CREA 1NYSA 1RGJA 1W6BA 3NDSA 1FSSB 2BTXA 2CCXA 3ERAA 1KU6B 1LX5B 1LXHA 5DO6A 1IKCA 2H5FA 2MJ0A 3KFDE 2H64B 1CTXA 4QTIU 1S4YA 2H7ZA 1LJZA 1HAJA 1BTEA 1CDTA 2UX2A 4BDTB 5EBXA 2CTXA 4HQPF 1CODA 1TFSA 4DO8A 1F8UB 1FFJA 1JBDA 1I02A 1QM7A 1UG4A 2H64C 4UY2C 3U74U 1NTNA 4LFTA 1RL5A 1VB0A 3NEQA 4FAOC 1NXBA 4IYEA 1CHVS 1LXGA 1DRSA 1FASA 1IDIA 2H62D 2UWRA
chains in the Genus database with same CATH topology
3PLCA 4BIKB 1L4WA 2X8BB 1ONJA 1CCQA 1KTZB 2GOOB 1NTXA 1NEAA 2MUOA 1KL8A 2JQPA 1KC4A 1IJCA 2CDXA 2L03A 3VTSA 3HH7A 1JE9A 1LSIA 1JGKA 1CDSA 2GOOC 1HOYA 2J8BA 1F94A 1IDHA 4ZQYA 2K3GA 1FSCA 2L5SA 1CXOA 1MR6A 3NH7A 2MHYA 1COEA 1TXBA 2I9BE 1KBTA 1NYUA 2LA1A 2OFSA 4P7UA 1XT3A 1IQ9A 2VLWA 1REWC 2FD6U 3FEVA 3U73U 2MJYA 1ERGA 1QKEA 4AEAA 1HC9B 1KBAA 1B41B 2QJAC 1HAAA 1KBSA 1H0JA 3EVSC 3LAQU 1YWHA 1ABTA 2JVEA 5IMTD 1CVOA 3BT1U 1KFHA 1M9ZA 4OM4A 1FRAA 4KSNA 2MJ4A 2QC1A 3QB4B 2QJBC 2ERAA 2PJYC 3BT2U 2H7ZB 1NORA 1BXPA 2N99A 1FF4A 1MAHF 2H62C 2NBTA 1KS6A 1CDRA 1ZADA 6EBXA 2HLRA 1CXNA 2H8UA 2QJ9C 5DZ5A 2MFAA 1G6MA 2BHIA 1ES7B 2CRSA 4EY8B 2LCRA 2CRTA 2MUPA 1IDGA 4XJJA 3KFDI 2HLQA 1V6PA 4FAOE 5IMYC 1CRFA 1IDLA 1KXIA 1TGXA 2PJYB 1TXAA 1PLOA 1CB9A 1ERAA 5DU1A 1IK8A 1QKDA 4RUDA 4OM5A 1HC9A 3EBXA 1CDQA 2ABXA 1CREA 1NYSA 1RGJA 1W6BA 3NDSA 1FSSB 2BTXA 2CCXA 3ERAA 1KU6B 1LX5B 1LXHA 5DO6A 1IKCA 2H5FA 2MJ0A 3KFDE 2H64B 1CTXA 4QTIU 1S4YA 2H7ZA 1LJZA 1HAJA 1BTEA 1CDTA 2UX2A 4BDTB 5EBXA 2CTXA 4HQPF 1CODA 1TFSA 4DO8A 1F8UB 1FFJA 1JBDA 1I02A 1QM7A 1UG4A 2H64C 4UY2C 3U74U 1NTNA 4LFTA 1RL5A 1VB0A 3NEQA 4FAOC 1NXBA 4IYEA 1CHVS 1LXGA 1DRSA 1FASA 1IDIA 2H62D 2UWRA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3PLC A;  4BIK B;  1L4W A;  2X8B B;  1ONJ A;  1CCQ A;  1KTZ B;  2GOO B;  1NTX A;  1NEA A;  2MUO A;  1KL8 A;  2JQP A;  1KC4 A;  1IJC A;  2CDX A;  2L03 A;  3VTS A;  3HH7 A;  1JE9 A;  1LSI A;  1JGK A;  1CDS A;  2GOO C;  1HOY A;  2J8B A;  1F94 A;  1IDH A;  4ZQY A;  2K3G A;  1FSC A;  2L5S A;  1CXO A;  1MR6 A;  3NH7 A;  2MHY A;  1COE A;  1TXB A;  2I9B E;  1KBT A;  1NYU A;  2LA1 A;  2OFS A;  4P7U A;  1XT3 A;  1IQ9 A;  2VLW A;  1REW C;  2FD6 U;  3FEV A;  3U73 U;  2MJY A;  1ERG A;  1QKE A;  4AEA A;  1HC9 B;  1KBA A;  1B41 B;  2QJA C;  1HAA A;  1KBS A;  1H0J A;  3EVS C;  3LAQ U;  1YWH A;  1ABT A;  2JVE A;  5IMT D;  1CVO A;  3BT1 U;  1KFH A;  1M9Z A;  4OM4 A;  1FRA A;  2MJ4 A;  2QC1 A;  3QB4 B;  2QJB C;  2ERA A;  2PJY C;  3BT2 U;  2H7Z B;  1NOR A;  1BXP A;  2N99 A;  1FF4 A;  1MAH F;  2H62 C;  2NBT A;  1KS6 A;  1CDR A;  1ZAD A;  6EBX A;  2HLR A;  1CXN A;  2H8U A;  2QJ9 C;  5DZ5 A;  2MFA A;  1G6M A;  2BHI A;  1ES7 B;  2CRS A;  4EY8 B;  2LCR A;  2CRT A;  2MUP A;  1IDG A;  4XJJ A;  3KFD I;  2HLQ A;  1V6P A;  4FAO E;  5IMY C;  1CRF A;  1IDL A;  1KXI A;  1TGX A;  2PJY B;  1TXA A;  1PLO A;  1CB9 A;  1ERA A;  5DU1 A;  1IK8 A;  1QKD A;  4RUD A;  4OM5 A;  1HC9 A;  3EBX A;  1CDQ A;  2ABX A;  1CRE A;  1NYS A;  1RGJ A;  1W6B A;  3NDS A;  1FSS B;  2BTX A;  2CCX A;  3ERA A;  1KU6 B;  1LX5 B;  1LXH A;  5DO6 A;  1IKC A;  2H5F A;  2MJ0 A;  3KFD E;  2H64 B;  1CTX A;  4QTI U;  1S4Y A;  2H7Z A;  1LJZ A;  1HAJ A;  1BTE A;  1CDT A;  2UX2 A;  4BDT B;  5EBX A;  2CTX A;  4HQP F;  1COD A;  1TFS A;  4DO8 A;  1F8U B;  1FFJ A;  1JBD A;  1I02 A;  1QM7 A;  1UG4 A;  2H64 C;  4UY2 C;  3U74 U;  1NTN A;  4LFT A;  1RL5 A;  1VB0 A;  3NEQ A;  4FAO C;  1NXB A;  4IYE A;  1CHV S;  1LXG A;  1DRS A;  1FAS A;  1IDI A;  2H62 D;  2UWR A; 
#chains in the Genus database with same CATH topology
 3PLC A;  4BIK B;  1L4W A;  2X8B B;  1ONJ A;  1CCQ A;  1KTZ B;  2GOO B;  1NTX A;  1NEA A;  2MUO A;  1KL8 A;  2JQP A;  1KC4 A;  1IJC A;  2CDX A;  2L03 A;  3VTS A;  3HH7 A;  1JE9 A;  1LSI A;  1JGK A;  1CDS A;  2GOO C;  1HOY A;  2J8B A;  1F94 A;  1IDH A;  4ZQY A;  2K3G A;  1FSC A;  2L5S A;  1CXO A;  1MR6 A;  3NH7 A;  2MHY A;  1COE A;  1TXB A;  2I9B E;  1KBT A;  1NYU A;  2LA1 A;  2OFS A;  4P7U A;  1XT3 A;  1IQ9 A;  2VLW A;  1REW C;  2FD6 U;  3FEV A;  3U73 U;  2MJY A;  1ERG A;  1QKE A;  4AEA A;  1HC9 B;  1KBA A;  1B41 B;  2QJA C;  1HAA A;  1KBS A;  1H0J A;  3EVS C;  3LAQ U;  1YWH A;  1ABT A;  2JVE A;  5IMT D;  1CVO A;  3BT1 U;  1KFH A;  1M9Z A;  4OM4 A;  1FRA A;  4KSN A;  2MJ4 A;  2QC1 A;  3QB4 B;  2QJB C;  2ERA A;  2PJY C;  3BT2 U;  2H7Z B;  1NOR A;  1BXP A;  2N99 A;  1FF4 A;  1MAH F;  2H62 C;  2NBT A;  1KS6 A;  1CDR A;  1ZAD A;  6EBX A;  2HLR A;  1CXN A;  2H8U A;  2QJ9 C;  5DZ5 A;  2MFA A;  1G6M A;  2BHI A;  1ES7 B;  2CRS A;  4EY8 B;  2LCR A;  2CRT A;  2MUP A;  1IDG A;  4XJJ A;  3KFD I;  2HLQ A;  1V6P A;  4FAO E;  5IMY C;  1CRF A;  1IDL A;  1KXI A;  1TGX A;  2PJY B;  1TXA A;  1PLO A;  1CB9 A;  1ERA A;  5DU1 A;  1IK8 A;  1QKD A;  4RUD A;  4OM5 A;  1HC9 A;  3EBX A;  1CDQ A;  2ABX A;  1CRE A;  1NYS A;  1RGJ A;  1W6B A;  3NDS A;  1FSS B;  2BTX A;  2CCX A;  3ERA A;  1KU6 B;  1LX5 B;  1LXH A;  5DO6 A;  1IKC A;  2H5F A;  2MJ0 A;  3KFD E;  2H64 B;  1CTX A;  4QTI U;  1S4Y A;  2H7Z A;  1LJZ A;  1HAJ A;  1BTE A;  1CDT A;  2UX2 A;  4BDT B;  5EBX A;  2CTX A;  4HQP F;  1COD A;  1TFS A;  4DO8 A;  1F8U B;  1FFJ A;  1JBD A;  1I02 A;  1QM7 A;  1UG4 A;  2H64 C;  4UY2 C;  3U74 U;  1NTN A;  4LFT A;  1RL5 A;  1VB0 A;  3NEQ A;  4FAO C;  1NXB A;  4IYE A;  1CHV S;  1LXG A;  1DRS A;  1FAS A;  1IDI A;  2H62 D;  2UWR A; 
#chains in the Genus database with same CATH homology
 3PLC A;  4BIK B;  1L4W A;  2X8B B;  1ONJ A;  1CCQ A;  1KTZ B;  2GOO B;  1NTX A;  1NEA A;  2MUO A;  1KL8 A;  2JQP A;  1KC4 A;  1IJC A;  2CDX A;  2L03 A;  3VTS A;  3HH7 A;  1JE9 A;  1LSI A;  1JGK A;  1CDS A;  2GOO C;  1HOY A;  2J8B A;  1F94 A;  1IDH A;  4ZQY A;  2K3G A;  1FSC A;  2L5S A;  1CXO A;  1MR6 A;  3NH7 A;  2MHY A;  1COE A;  1TXB A;  2I9B E;  1KBT A;  1NYU A;  2LA1 A;  2OFS A;  4P7U A;  1XT3 A;  1IQ9 A;  2VLW A;  1REW C;  2FD6 U;  3FEV A;  3U73 U;  2MJY A;  1ERG A;  1QKE A;  4AEA A;  1HC9 B;  1KBA A;  1B41 B;  2QJA C;  1HAA A;  1KBS A;  1H0J A;  3EVS C;  3LAQ U;  1YWH A;  1ABT A;  2JVE A;  5IMT D;  1CVO A;  3BT1 U;  1KFH A;  1M9Z A;  4OM4 A;  1FRA A;  4KSN A;  2MJ4 A;  2QC1 A;  3QB4 B;  2QJB C;  2ERA A;  2PJY C;  3BT2 U;  2H7Z B;  1NOR A;  1BXP A;  2N99 A;  1FF4 A;  1MAH F;  2H62 C;  2NBT A;  1KS6 A;  1CDR A;  1ZAD A;  6EBX A;  2HLR A;  1CXN A;  2H8U A;  2QJ9 C;  5DZ5 A;  2MFA A;  1G6M A;  2BHI A;  1ES7 B;  2CRS A;  4EY8 B;  2LCR A;  2CRT A;  2MUP A;  1IDG A;  4XJJ A;  3KFD I;  2HLQ A;  1V6P A;  4FAO E;  5IMY C;  1CRF A;  1IDL A;  1KXI A;  1TGX A;  2PJY B;  1TXA A;  1PLO A;  1CB9 A;  1ERA A;  5DU1 A;  1IK8 A;  1QKD A;  4RUD A;  4OM5 A;  1HC9 A;  3EBX A;  1CDQ A;  2ABX A;  1CRE A;  1NYS A;  1RGJ A;  1W6B A;  3NDS A;  1FSS B;  2BTX A;  2CCX A;  3ERA A;  1KU6 B;  1LX5 B;  1LXH A;  5DO6 A;  1IKC A;  2H5F A;  2MJ0 A;  3KFD E;  2H64 B;  1CTX A;  4QTI U;  1S4Y A;  2H7Z A;  1LJZ A;  1HAJ A;  1BTE A;  1CDT A;  2UX2 A;  4BDT B;  5EBX A;  2CTX A;  4HQP F;  1COD A;  1TFS A;  4DO8 A;  1F8U B;  1FFJ A;  1JBD A;  1I02 A;  1QM7 A;  1UG4 A;  2H64 C;  4UY2 C;  3U74 U;  1NTN A;  4LFT A;  1RL5 A;  1VB0 A;  3NEQ A;  4FAO C;  1NXB A;  4IYE A;  1CHV S;  1LXG A;  1DRS A;  1FAS A;  1IDI A;  2H62 D;  2UWR A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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