1FFJA

Nmr structure of cardiotoxin in dpc-micelle
Total Genus 6
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
6
sequence length
60
structure length
60
Chain Sequence
LKCKKLVPLFSKTCPAGKNLCYKMFMVAAPHVPVKRGCIDVCPKSSLLVKYVCCNTDKCN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Toxin
molecule keywords CYTOTOXIN 2
publication title Membrane binding motif of the P-type cardiotoxin.
pubmed doi rcsb
total genus 6
structure length 60
sequence length 60
ec nomenclature
pdb deposition date 2000-07-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00087 Toxin_TOLIP Snake toxin and toxin-like protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.60.10 Mainly Beta Ribbon CD59 CD59 1ffjA00
1NTNA 1CODA 1CDTA 2CDXA 2MFAA 2QJ9C 1RGJA 1NORA 1QKEA 2H7ZA 1NYSA 2CRTA 2JVEA 1L4WA 1IDIA 4XJJA 2H8UA 1KU6B 1UG4A 3FEVA 1W6BA 2NBTA 3PLCA 2UX2A 1ONJA 2CTXA 2GOOC 2QJBC 2X8BB 1NYUA 2MJYA 1KS6A 2K3GA 2HLRA 1HOYA 1HAAA 2MUPA 2J8BA 2MJ0A 3NDSA 1PLOA 1XT3A 1JGKA 1B41B 2PJYB 2H64B 3VTSA 2QJAC 3NH7A 1HAJA 2H5FA 4QTIU 1ZADA 5IMTD 1KTZB 2H62C 5DZ5A 3LAQU 1S4YA 3KFDE 3QB4B 1IJCA 5DO6A 1REWC 2QC1A 1F8UB 1ABTA 2BHIA 4BDTB 1IKCA 1FASA 1ERGA 2LCRA 1NXBA 6EBXA 1IQ9A 4LFTA 2H62D 3U73U 2MUOA 1FSSB 1I02A 1COEA 2N99A 3BT1U 1KL8A 2OFSA 1LJZA 3KFDI 4FAOC 4UY2C 2BTXA 1HC9A 1ERAA 1TXAA 1CXOA 1KC4A 4FAOE 1FF4A 1TFSA 3BT2U 2I9BE 1CXNA 1FRAA 2ERAA 1HC9B 2L5SA 1KBAA 1FSCA 1BXPA 1DRSA 2L03A 1CDRA 1KFHA 4DO8A 1JE9A 1CTXA 1NTXA 1CHVS 2MJ4A 3EBXA 4ZQYA 1CB9A 3EVSC 1CVOA 5EBXA 2PJYC 2H64C 1MR6A 4IYEA 1KBTA 1CREA 2LA1A 2HLQA 4EY8B 3NEQA 1IK8A 2GOOB 1H0JA 1TGXA 4OM5A 1KXIA 1YWHA 1TXBA 1G6MA 2MHYA 1VB0A 1ES7B 3HH7A 1CRFA 4HQPF 2FD6U 3ERAA 1CDQA 1LX5B 2ABXA 5DU1A 1QM7A 1CCQA 1LXHA 1BTEA 4BIKB 2H7ZB 4RUDA 1IDLA 1FFJA 1IDGA 1CDSA 1IDHA 1LSIA 1RL5A 2CRSA 2JQPA 2VLWA 1NEAA 2UWRA 4OM4A 1V6PA 4AEAA 1MAHF 1M9ZA 1QKDA 4P7UA 2CCXA 1JBDA 1KBSA 1LXGA 5IMYC 1F94A 3U74U
chains in the Genus database with same CATH superfamily
1NTNA 1CODA 1CDTA 2CDXA 2MFAA 2QJ9C 1RGJA 1NORA 1QKEA 2H7ZA 1NYSA 2CRTA 2JVEA 1L4WA 1IDIA 4XJJA 2H8UA 1KU6B 1UG4A 3FEVA 1W6BA 2NBTA 3PLCA 2UX2A 1ONJA 2CTXA 2GOOC 2QJBC 2X8BB 1NYUA 2MJYA 1KS6A 2K3GA 2HLRA 1HOYA 1HAAA 2MUPA 2J8BA 2MJ0A 3NDSA 1PLOA 1XT3A 1JGKA 1B41B 2PJYB 2H64B 3VTSA 2QJAC 3NH7A 1HAJA 2H5FA 4QTIU 1ZADA 5IMTD 1KTZB 2H62C 5DZ5A 3LAQU 1S4YA 3KFDE 3QB4B 1IJCA 5DO6A 1REWC 2QC1A 1F8UB 1ABTA 2BHIA 4BDTB 1IKCA 1FASA 1ERGA 2LCRA 1NXBA 6EBXA 1IQ9A 4LFTA 2H62D 3U73U 2MUOA 1FSSB 1I02A 1COEA 2N99A 3BT1U 1KL8A 2OFSA 1LJZA 3KFDI 4FAOC 4UY2C 2BTXA 1HC9A 1ERAA 1TXAA 1CXOA 1KC4A 4FAOE 1FF4A 1TFSA 3BT2U 2I9BE 1CXNA 1FRAA 2ERAA 1HC9B 2L5SA 1KBAA 1FSCA 1BXPA 1DRSA 2L03A 1CDRA 1KFHA 4DO8A 1JE9A 1CTXA 1NTXA 1CHVS 2MJ4A 3EBXA 4ZQYA 1CB9A 3EVSC 1CVOA 5EBXA 2PJYC 2H64C 1MR6A 4IYEA 1KBTA 1CREA 2LA1A 2HLQA 4EY8B 3NEQA 1IK8A 2GOOB 1H0JA 1TGXA 4OM5A 1KXIA 1YWHA 1TXBA 1G6MA 2MHYA 1VB0A 1ES7B 3HH7A 1CRFA 4HQPF 2FD6U 3ERAA 4KSNA 1LX5B 1CDQA 2ABXA 5DU1A 1QM7A 1CCQA 1LXHA 1BTEA 4BIKB 2H7ZB 4RUDA 1IDLA 1FFJA 1IDGA 1CDSA 1IDHA 1LSIA 1RL5A 2CRSA 2JQPA 2VLWA 1NEAA 2UWRA 4OM4A 1V6PA 4AEAA 1MAHF 1M9ZA 1QKDA 4P7UA 2CCXA 1JBDA 1KBSA 1LXGA 5IMYC 1F94A 3U74U
chains in the Genus database with same CATH topology
1NTNA 1CODA 1CDTA 2CDXA 2MFAA 2QJ9C 1RGJA 1NORA 1QKEA 2H7ZA 1NYSA 2CRTA 2JVEA 1L4WA 1IDIA 4XJJA 2H8UA 1KU6B 1UG4A 3FEVA 1W6BA 2NBTA 3PLCA 2UX2A 1ONJA 2CTXA 2GOOC 2QJBC 2X8BB 1NYUA 2MJYA 1KS6A 2K3GA 2HLRA 1HOYA 1HAAA 2MUPA 2J8BA 2MJ0A 3NDSA 1PLOA 1XT3A 1JGKA 1B41B 2PJYB 2H64B 3VTSA 2QJAC 3NH7A 1HAJA 2H5FA 4QTIU 1ZADA 5IMTD 1KTZB 2H62C 5DZ5A 3LAQU 1S4YA 3KFDE 3QB4B 1IJCA 5DO6A 1REWC 2QC1A 1F8UB 1ABTA 2BHIA 4BDTB 1IKCA 1FASA 1ERGA 2LCRA 1NXBA 6EBXA 1IQ9A 4LFTA 2H62D 3U73U 2MUOA 1FSSB 1I02A 1COEA 2N99A 3BT1U 1KL8A 2OFSA 1LJZA 3KFDI 4FAOC 4UY2C 2BTXA 1HC9A 1ERAA 1TXAA 1CXOA 1KC4A 4FAOE 1FF4A 1TFSA 3BT2U 2I9BE 1CXNA 1FRAA 2ERAA 1HC9B 2L5SA 1KBAA 1FSCA 1BXPA 1DRSA 2L03A 1CDRA 1KFHA 4DO8A 1JE9A 1CTXA 1NTXA 1CHVS 2MJ4A 3EBXA 4ZQYA 1CB9A 3EVSC 1CVOA 5EBXA 2PJYC 2H64C 1MR6A 4IYEA 1KBTA 1CREA 2LA1A 2HLQA 4EY8B 3NEQA 1IK8A 2GOOB 1H0JA 1TGXA 4OM5A 1KXIA 1YWHA 1TXBA 1G6MA 2MHYA 1VB0A 1ES7B 3HH7A 1CRFA 4HQPF 2FD6U 3ERAA 4KSNA 1LX5B 1CDQA 2ABXA 5DU1A 1QM7A 1CCQA 1LXHA 1BTEA 4BIKB 2H7ZB 4RUDA 1IDLA 1FFJA 1IDGA 1CDSA 1IDHA 1LSIA 1RL5A 2CRSA 2JQPA 2VLWA 1NEAA 2UWRA 4OM4A 1V6PA 4AEAA 1MAHF 1M9ZA 1QKDA 4P7UA 2CCXA 1JBDA 1KBSA 1LXGA 5IMYC 1F94A 3U74U
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1NTN A;  1COD A;  1CDT A;  2CDX A;  2MFA A;  2QJ9 C;  1RGJ A;  1NOR A;  1QKE A;  2H7Z A;  1NYS A;  2CRT A;  2JVE A;  1L4W A;  1IDI A;  4XJJ A;  2H8U A;  1KU6 B;  1UG4 A;  3FEV A;  1W6B A;  2NBT A;  3PLC A;  2UX2 A;  1ONJ A;  2CTX A;  2GOO C;  2QJB C;  2X8B B;  1NYU A;  2MJY A;  1KS6 A;  2K3G A;  2HLR A;  1HOY A;  1HAA A;  2MUP A;  2J8B A;  2MJ0 A;  3NDS A;  1PLO A;  1XT3 A;  1JGK A;  1B41 B;  2PJY B;  2H64 B;  3VTS A;  2QJA C;  3NH7 A;  1HAJ A;  2H5F A;  4QTI U;  1ZAD A;  5IMT D;  1KTZ B;  2H62 C;  5DZ5 A;  3LAQ U;  1S4Y A;  3KFD E;  3QB4 B;  1IJC A;  5DO6 A;  1REW C;  2QC1 A;  1F8U B;  1ABT A;  2BHI A;  4BDT B;  1IKC A;  1FAS A;  1ERG A;  2LCR A;  1NXB A;  6EBX A;  1IQ9 A;  4LFT A;  2H62 D;  3U73 U;  2MUO A;  1FSS B;  1I02 A;  1COE A;  2N99 A;  3BT1 U;  1KL8 A;  2OFS A;  1LJZ A;  3KFD I;  4FAO C;  4UY2 C;  2BTX A;  1HC9 A;  1ERA A;  1TXA A;  1CXO A;  1KC4 A;  4FAO E;  1FF4 A;  1TFS A;  3BT2 U;  2I9B E;  1CXN A;  1FRA A;  2ERA A;  1HC9 B;  2L5S A;  1KBA A;  1FSC A;  1BXP A;  1DRS A;  2L03 A;  1CDR A;  1KFH A;  4DO8 A;  1JE9 A;  1CTX A;  1NTX A;  1CHV S;  2MJ4 A;  3EBX A;  4ZQY A;  1CB9 A;  3EVS C;  1CVO A;  5EBX A;  2PJY C;  2H64 C;  1MR6 A;  4IYE A;  1KBT A;  1CRE A;  2LA1 A;  2HLQ A;  4EY8 B;  3NEQ A;  1IK8 A;  2GOO B;  1H0J A;  1TGX A;  4OM5 A;  1KXI A;  1YWH A;  1TXB A;  1G6M A;  2MHY A;  1VB0 A;  1ES7 B;  3HH7 A;  1CRF A;  4HQP F;  2FD6 U;  3ERA A;  1CDQ A;  1LX5 B;  2ABX A;  5DU1 A;  1QM7 A;  1CCQ A;  1LXH A;  1BTE A;  4BIK B;  2H7Z B;  4RUD A;  1IDL A;  1FFJ A;  1IDG A;  1CDS A;  1IDH A;  1LSI A;  1RL5 A;  2CRS A;  2JQP A;  2VLW A;  1NEA A;  2UWR A;  4OM4 A;  1V6P A;  4AEA A;  1MAH F;  1M9Z A;  1QKD A;  4P7U A;  2CCX A;  1JBD A;  1KBS A;  1LXG A;  5IMY C;  1F94 A;  3U74 U; 
#chains in the Genus database with same CATH topology
 1NTN A;  1COD A;  1CDT A;  2CDX A;  2MFA A;  2QJ9 C;  1RGJ A;  1NOR A;  1QKE A;  2H7Z A;  1NYS A;  2CRT A;  2JVE A;  1L4W A;  1IDI A;  4XJJ A;  2H8U A;  1KU6 B;  1UG4 A;  3FEV A;  1W6B A;  2NBT A;  3PLC A;  2UX2 A;  1ONJ A;  2CTX A;  2GOO C;  2QJB C;  2X8B B;  1NYU A;  2MJY A;  1KS6 A;  2K3G A;  2HLR A;  1HOY A;  1HAA A;  2MUP A;  2J8B A;  2MJ0 A;  3NDS A;  1PLO A;  1XT3 A;  1JGK A;  1B41 B;  2PJY B;  2H64 B;  3VTS A;  2QJA C;  3NH7 A;  1HAJ A;  2H5F A;  4QTI U;  1ZAD A;  5IMT D;  1KTZ B;  2H62 C;  5DZ5 A;  3LAQ U;  1S4Y A;  3KFD E;  3QB4 B;  1IJC A;  5DO6 A;  1REW C;  2QC1 A;  1F8U B;  1ABT A;  2BHI A;  4BDT B;  1IKC A;  1FAS A;  1ERG A;  2LCR A;  1NXB A;  6EBX A;  1IQ9 A;  4LFT A;  2H62 D;  3U73 U;  2MUO A;  1FSS B;  1I02 A;  1COE A;  2N99 A;  3BT1 U;  1KL8 A;  2OFS A;  1LJZ A;  3KFD I;  4FAO C;  4UY2 C;  2BTX A;  1HC9 A;  1ERA A;  1TXA A;  1CXO A;  1KC4 A;  4FAO E;  1FF4 A;  1TFS A;  3BT2 U;  2I9B E;  1CXN A;  1FRA A;  2ERA A;  1HC9 B;  2L5S A;  1KBA A;  1FSC A;  1BXP A;  1DRS A;  2L03 A;  1CDR A;  1KFH A;  4DO8 A;  1JE9 A;  1CTX A;  1NTX A;  1CHV S;  2MJ4 A;  3EBX A;  4ZQY A;  1CB9 A;  3EVS C;  1CVO A;  5EBX A;  2PJY C;  2H64 C;  1MR6 A;  4IYE A;  1KBT A;  1CRE A;  2LA1 A;  2HLQ A;  4EY8 B;  3NEQ A;  1IK8 A;  2GOO B;  1H0J A;  1TGX A;  4OM5 A;  1KXI A;  1YWH A;  1TXB A;  1G6M A;  2MHY A;  1VB0 A;  1ES7 B;  3HH7 A;  1CRF A;  4HQP F;  2FD6 U;  3ERA A;  4KSN A;  1LX5 B;  1CDQ A;  2ABX A;  5DU1 A;  1QM7 A;  1CCQ A;  1LXH A;  1BTE A;  4BIK B;  2H7Z B;  4RUD A;  1IDL A;  1FFJ A;  1IDG A;  1CDS A;  1IDH A;  1LSI A;  1RL5 A;  2CRS A;  2JQP A;  2VLW A;  1NEA A;  2UWR A;  4OM4 A;  1V6P A;  4AEA A;  1MAH F;  1M9Z A;  1QKD A;  4P7U A;  2CCX A;  1JBD A;  1KBS A;  1LXG A;  5IMY C;  1F94 A;  3U74 U; 
#chains in the Genus database with same CATH homology
 1NTN A;  1COD A;  1CDT A;  2CDX A;  2MFA A;  2QJ9 C;  1RGJ A;  1NOR A;  1QKE A;  2H7Z A;  1NYS A;  2CRT A;  2JVE A;  1L4W A;  1IDI A;  4XJJ A;  2H8U A;  1KU6 B;  1UG4 A;  3FEV A;  1W6B A;  2NBT A;  3PLC A;  2UX2 A;  1ONJ A;  2CTX A;  2GOO C;  2QJB C;  2X8B B;  1NYU A;  2MJY A;  1KS6 A;  2K3G A;  2HLR A;  1HOY A;  1HAA A;  2MUP A;  2J8B A;  2MJ0 A;  3NDS A;  1PLO A;  1XT3 A;  1JGK A;  1B41 B;  2PJY B;  2H64 B;  3VTS A;  2QJA C;  3NH7 A;  1HAJ A;  2H5F A;  4QTI U;  1ZAD A;  5IMT D;  1KTZ B;  2H62 C;  5DZ5 A;  3LAQ U;  1S4Y A;  3KFD E;  3QB4 B;  1IJC A;  5DO6 A;  1REW C;  2QC1 A;  1F8U B;  1ABT A;  2BHI A;  4BDT B;  1IKC A;  1FAS A;  1ERG A;  2LCR A;  1NXB A;  6EBX A;  1IQ9 A;  4LFT A;  2H62 D;  3U73 U;  2MUO A;  1FSS B;  1I02 A;  1COE A;  2N99 A;  3BT1 U;  1KL8 A;  2OFS A;  1LJZ A;  3KFD I;  4FAO C;  4UY2 C;  2BTX A;  1HC9 A;  1ERA A;  1TXA A;  1CXO A;  1KC4 A;  4FAO E;  1FF4 A;  1TFS A;  3BT2 U;  2I9B E;  1CXN A;  1FRA A;  2ERA A;  1HC9 B;  2L5S A;  1KBA A;  1FSC A;  1BXP A;  1DRS A;  2L03 A;  1CDR A;  1KFH A;  4DO8 A;  1JE9 A;  1CTX A;  1NTX A;  1CHV S;  2MJ4 A;  3EBX A;  4ZQY A;  1CB9 A;  3EVS C;  1CVO A;  5EBX A;  2PJY C;  2H64 C;  1MR6 A;  4IYE A;  1KBT A;  1CRE A;  2LA1 A;  2HLQ A;  4EY8 B;  3NEQ A;  1IK8 A;  2GOO B;  1H0J A;  1TGX A;  4OM5 A;  1KXI A;  1YWH A;  1TXB A;  1G6M A;  2MHY A;  1VB0 A;  1ES7 B;  3HH7 A;  1CRF A;  4HQP F;  2FD6 U;  3ERA A;  4KSN A;  1LX5 B;  1CDQ A;  2ABX A;  5DU1 A;  1QM7 A;  1CCQ A;  1LXH A;  1BTE A;  4BIK B;  2H7Z B;  4RUD A;  1IDL A;  1FFJ A;  1IDG A;  1CDS A;  1IDH A;  1LSI A;  1RL5 A;  2CRS A;  2JQP A;  2VLW A;  1NEA A;  2UWR A;  4OM4 A;  1V6P A;  4AEA A;  1MAH F;  1M9Z A;  1QKD A;  4P7U A;  2CCX A;  1JBD A;  1KBS A;  1LXG A;  5IMY C;  1F94 A;  3U74 U; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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