1FFJA

Nmr structure of cardiotoxin in dpc-micelle
Total Genus 6
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
6
sequence length
60
structure length
60
Chain Sequence
LKCKKLVPLFSKTCPAGKNLCYKMFMVAAPHVPVKRGCIDVCPKSSLLVKYVCCNTDKCN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Toxin
molecule keywords CYTOTOXIN 2
publication title Membrane binding motif of the P-type cardiotoxin.
pubmed doi rcsb
total genus 6
structure length 60
sequence length 60
ec nomenclature
pdb deposition date 2000-07-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00087 Toxin_TOLIP Snake toxin and toxin-like protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.60.10 Mainly Beta Ribbon CD59 CD59 1ffjA00
5DO6A 6EBXA 1TFSA 3LAQU 1ERGA 1FFJA 3BT2U 1F94A 1CCQA 1DRSA 2LA1A 1F8UB 1LX5B 1TGXA 2QJ9C 1HOYA 2H64C 5IMTD 3FEVA 2MUOA 1MR6A 2PJYC 1FSCA 3NEQA 2JVEA 1BTEA 1JBDA 1KS6A 1IK8A 2HLRA 1UG4A 2CDXA 1IDIA 1RGJA 1LXHA 1ABTA 4ZQYA 1JE9A 2L5SA 1QKDA 2BTXA 2H5FA 2MHYA 2UWRA 4FAOE 4EY8B 1QM7A 1TXAA 2H62C 2BHIA 1IDGA 1I02A 4P7UA 2CCXA 1CREA 2I9BE 1NXBA 1CDTA 1CB9A 1REWC 1FASA 1NYUA 2H64B 4FAOC 1CDRA 2PJYB 1XT3A 2GOOC 2QJAC 2N99A 1IDLA 3EVSC 1HAJA 1LXGA 2J8BA 2MJYA 1NORA 2L03A 1B41B 3ERAA 1ERAA 2MUPA 3PLCA 1IQ9A 1W6BA 2CTXA 1S4YA 1ZADA 4AEAA 1BXPA 1CHVS 2MJ0A 1KU6B 2ABXA 1H0JA 2H7ZB 4XJJA 1CVOA 1KC4A 3NDSA 3VTSA 1KBAA 2NBTA 1PLOA 1IJCA 1CODA 1NTXA 2H62D 4QTIU 2FD6U 1KXIA 2MJ4A 5EBXA 2LCRA 2MFAA 2H8UA 1CDQA 3EBXA 1KL8A 1LJZA 2QC1A 1IKCA 4IYEA 1CRFA 2K3GA 2UX2A 3KFDE 2HLQA 4OM5A 2GOOB 4RUDA 2CRSA 1NYSA 3BT1U 1L4WA 1HC9B 1HC9A 1CXNA 4BDTB 2CRTA 1KTZB 3U73U 4LFTA 5DZ5A 5IMYC 1LSIA 1RL5A 3KFDI 2VLWA 1CDSA 1NTNA 2X8BB 1KBSA 2ERAA 1G6MA 1JGKA 4UY2C 4DO8A 4HQPF 2H7ZA 3NH7A 2QJBC 1ES7B 1ONJA 1KBTA 4OM4A 5DU1A 3QB4B 3U74U 1CXOA 1HAAA 1QKEA 3HH7A 1MAHF 1TXBA 1VB0A 1M9ZA 2JQPA 4BIKB 1COEA 1FSSB 1NEAA 1CTXA 1V6PA 1IDHA 1YWHA 1FRAA 2OFSA 1KFHA 1FF4A
chains in the Genus database with same CATH superfamily
5DO6A 6EBXA 1TFSA 3LAQU 4KSNA 1ERGA 1FFJA 3BT2U 1F94A 1CCQA 1DRSA 2LA1A 1F8UB 1LX5B 1TGXA 2QJ9C 1HOYA 2H64C 5IMTD 3FEVA 2MUOA 1MR6A 2PJYC 1FSCA 3NEQA 2JVEA 1BTEA 1JBDA 1KS6A 1IK8A 2HLRA 1UG4A 2CDXA 1IDIA 1RGJA 1LXHA 1ABTA 4ZQYA 1JE9A 2L5SA 1QKDA 2BTXA 2H5FA 2MHYA 2UWRA 4FAOE 4EY8B 1QM7A 1TXAA 2H62C 2BHIA 1IDGA 1I02A 4P7UA 2CCXA 1CREA 2I9BE 1NXBA 1CDTA 1CB9A 1REWC 1FASA 1NYUA 2H64B 4FAOC 1CDRA 2PJYB 1XT3A 2GOOC 2QJAC 2N99A 1IDLA 3EVSC 1HAJA 1LXGA 2J8BA 2MJYA 1NORA 2L03A 1B41B 3ERAA 1ERAA 2MUPA 3PLCA 1IQ9A 1W6BA 2CTXA 1S4YA 1ZADA 4AEAA 1BXPA 1CHVS 2MJ0A 1KU6B 2ABXA 1H0JA 2H7ZB 4XJJA 1CVOA 1KC4A 3NDSA 3VTSA 1KBAA 2NBTA 1PLOA 1IJCA 1CODA 1NTXA 2H62D 4QTIU 2FD6U 1KXIA 2MJ4A 5EBXA 2LCRA 2MFAA 2H8UA 1CDQA 3EBXA 1KL8A 1LJZA 2QC1A 1IKCA 4IYEA 1CRFA 2K3GA 2UX2A 3KFDE 2HLQA 4OM5A 2GOOB 4RUDA 2CRSA 1NYSA 3BT1U 1L4WA 1HC9B 1HC9A 1CXNA 4BDTB 2CRTA 1KTZB 3U73U 4LFTA 5DZ5A 5IMYC 1LSIA 1RL5A 3KFDI 2VLWA 1CDSA 1NTNA 2X8BB 1KBSA 2ERAA 1G6MA 1JGKA 4UY2C 4DO8A 4HQPF 2H7ZA 3NH7A 2QJBC 1ES7B 1ONJA 1KBTA 4OM4A 5DU1A 3QB4B 3U74U 1CXOA 1HAAA 1QKEA 3HH7A 1MAHF 1TXBA 1VB0A 1M9ZA 2JQPA 4BIKB 1COEA 1FSSB 1NEAA 1CTXA 1V6PA 1IDHA 1YWHA 1FRAA 2OFSA 1KFHA 1FF4A
chains in the Genus database with same CATH topology
5DO6A 6EBXA 1TFSA 3LAQU 4KSNA 1ERGA 1FFJA 3BT2U 1F94A 1CCQA 1DRSA 2LA1A 1F8UB 1LX5B 1TGXA 2QJ9C 1HOYA 2H64C 5IMTD 3FEVA 2MUOA 1MR6A 2PJYC 1FSCA 3NEQA 2JVEA 1BTEA 1JBDA 1KS6A 1IK8A 2HLRA 1UG4A 2CDXA 1IDIA 1RGJA 1LXHA 1ABTA 4ZQYA 1JE9A 2L5SA 1QKDA 2BTXA 2H5FA 2MHYA 2UWRA 4FAOE 4EY8B 1QM7A 1TXAA 2H62C 2BHIA 1IDGA 1I02A 4P7UA 2CCXA 1CREA 2I9BE 1NXBA 1CDTA 1CB9A 1REWC 1FASA 1NYUA 2H64B 4FAOC 1CDRA 2PJYB 1XT3A 2GOOC 2QJAC 2N99A 1IDLA 3EVSC 1HAJA 1LXGA 2J8BA 2MJYA 1NORA 2L03A 1B41B 3ERAA 1ERAA 2MUPA 3PLCA 1IQ9A 1W6BA 2CTXA 1S4YA 1ZADA 4AEAA 1BXPA 1CHVS 2MJ0A 1KU6B 2ABXA 1H0JA 2H7ZB 4XJJA 1CVOA 1KC4A 3NDSA 3VTSA 1KBAA 2NBTA 1PLOA 1IJCA 1CODA 1NTXA 2H62D 4QTIU 2FD6U 1KXIA 2MJ4A 5EBXA 2LCRA 2MFAA 2H8UA 1CDQA 3EBXA 1KL8A 1LJZA 2QC1A 1IKCA 4IYEA 1CRFA 2K3GA 2UX2A 3KFDE 2HLQA 4OM5A 2GOOB 4RUDA 2CRSA 1NYSA 3BT1U 1L4WA 1HC9B 1HC9A 1CXNA 4BDTB 2CRTA 1KTZB 3U73U 4LFTA 5DZ5A 5IMYC 1LSIA 1RL5A 3KFDI 2VLWA 1CDSA 1NTNA 2X8BB 1KBSA 2ERAA 1G6MA 1JGKA 4UY2C 4DO8A 4HQPF 2H7ZA 3NH7A 2QJBC 1ES7B 1ONJA 1KBTA 4OM4A 5DU1A 3QB4B 3U74U 1CXOA 1HAAA 1QKEA 3HH7A 1MAHF 1TXBA 1VB0A 1M9ZA 2JQPA 4BIKB 1COEA 1FSSB 1NEAA 1CTXA 1V6PA 1IDHA 1YWHA 1FRAA 2OFSA 1KFHA 1FF4A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5DO6 A;  6EBX A;  1TFS A;  3LAQ U;  1ERG A;  1FFJ A;  3BT2 U;  1F94 A;  1CCQ A;  1DRS A;  2LA1 A;  1F8U B;  1LX5 B;  1TGX A;  2QJ9 C;  1HOY A;  2H64 C;  5IMT D;  3FEV A;  2MUO A;  1MR6 A;  2PJY C;  1FSC A;  3NEQ A;  2JVE A;  1BTE A;  1JBD A;  1KS6 A;  1IK8 A;  2HLR A;  1UG4 A;  2CDX A;  1IDI A;  1RGJ A;  1LXH A;  1ABT A;  4ZQY A;  1JE9 A;  2L5S A;  1QKD A;  2BTX A;  2H5F A;  2MHY A;  2UWR A;  4FAO E;  4EY8 B;  1QM7 A;  1TXA A;  2H62 C;  2BHI A;  1IDG A;  1I02 A;  4P7U A;  2CCX A;  1CRE A;  2I9B E;  1NXB A;  1CDT A;  1CB9 A;  1REW C;  1FAS A;  1NYU A;  2H64 B;  4FAO C;  1CDR A;  2PJY B;  1XT3 A;  2GOO C;  2QJA C;  2N99 A;  1IDL A;  3EVS C;  1HAJ A;  1LXG A;  2J8B A;  2MJY A;  1NOR A;  2L03 A;  1B41 B;  3ERA A;  1ERA A;  2MUP A;  3PLC A;  1IQ9 A;  1W6B A;  2CTX A;  1S4Y A;  1ZAD A;  4AEA A;  1BXP A;  1CHV S;  2MJ0 A;  1KU6 B;  2ABX A;  1H0J A;  2H7Z B;  4XJJ A;  1CVO A;  1KC4 A;  3NDS A;  3VTS A;  1KBA A;  2NBT A;  1PLO A;  1IJC A;  1COD A;  1NTX A;  2H62 D;  4QTI U;  2FD6 U;  1KXI A;  2MJ4 A;  5EBX A;  2LCR A;  2MFA A;  2H8U A;  1CDQ A;  3EBX A;  1KL8 A;  1LJZ A;  2QC1 A;  1IKC A;  4IYE A;  1CRF A;  2K3G A;  2UX2 A;  3KFD E;  2HLQ A;  4OM5 A;  2GOO B;  4RUD A;  2CRS A;  1NYS A;  3BT1 U;  1L4W A;  1HC9 B;  1HC9 A;  1CXN A;  4BDT B;  2CRT A;  1KTZ B;  3U73 U;  4LFT A;  5DZ5 A;  5IMY C;  1LSI A;  1RL5 A;  3KFD I;  2VLW A;  1CDS A;  1NTN A;  2X8B B;  1KBS A;  2ERA A;  1G6M A;  1JGK A;  4UY2 C;  4DO8 A;  4HQP F;  2H7Z A;  3NH7 A;  2QJB C;  1ES7 B;  1ONJ A;  1KBT A;  4OM4 A;  5DU1 A;  3QB4 B;  3U74 U;  1CXO A;  1HAA A;  1QKE A;  3HH7 A;  1MAH F;  1TXB A;  1VB0 A;  1M9Z A;  2JQP A;  4BIK B;  1COE A;  1FSS B;  1NEA A;  1CTX A;  1V6P A;  1IDH A;  1YWH A;  1FRA A;  2OFS A;  1KFH A;  1FF4 A; 
#chains in the Genus database with same CATH topology
 5DO6 A;  6EBX A;  1TFS A;  3LAQ U;  4KSN A;  1ERG A;  1FFJ A;  3BT2 U;  1F94 A;  1CCQ A;  1DRS A;  2LA1 A;  1F8U B;  1LX5 B;  1TGX A;  2QJ9 C;  1HOY A;  2H64 C;  5IMT D;  3FEV A;  2MUO A;  1MR6 A;  2PJY C;  1FSC A;  3NEQ A;  2JVE A;  1BTE A;  1JBD A;  1KS6 A;  1IK8 A;  2HLR A;  1UG4 A;  2CDX A;  1IDI A;  1RGJ A;  1LXH A;  1ABT A;  4ZQY A;  1JE9 A;  2L5S A;  1QKD A;  2BTX A;  2H5F A;  2MHY A;  2UWR A;  4FAO E;  4EY8 B;  1QM7 A;  1TXA A;  2H62 C;  2BHI A;  1IDG A;  1I02 A;  4P7U A;  2CCX A;  1CRE A;  2I9B E;  1NXB A;  1CDT A;  1CB9 A;  1REW C;  1FAS A;  1NYU A;  2H64 B;  4FAO C;  1CDR A;  2PJY B;  1XT3 A;  2GOO C;  2QJA C;  2N99 A;  1IDL A;  3EVS C;  1HAJ A;  1LXG A;  2J8B A;  2MJY A;  1NOR A;  2L03 A;  1B41 B;  3ERA A;  1ERA A;  2MUP A;  3PLC A;  1IQ9 A;  1W6B A;  2CTX A;  1S4Y A;  1ZAD A;  4AEA A;  1BXP A;  1CHV S;  2MJ0 A;  1KU6 B;  2ABX A;  1H0J A;  2H7Z B;  4XJJ A;  1CVO A;  1KC4 A;  3NDS A;  3VTS A;  1KBA A;  2NBT A;  1PLO A;  1IJC A;  1COD A;  1NTX A;  2H62 D;  4QTI U;  2FD6 U;  1KXI A;  2MJ4 A;  5EBX A;  2LCR A;  2MFA A;  2H8U A;  1CDQ A;  3EBX A;  1KL8 A;  1LJZ A;  2QC1 A;  1IKC A;  4IYE A;  1CRF A;  2K3G A;  2UX2 A;  3KFD E;  2HLQ A;  4OM5 A;  2GOO B;  4RUD A;  2CRS A;  1NYS A;  3BT1 U;  1L4W A;  1HC9 B;  1HC9 A;  1CXN A;  4BDT B;  2CRT A;  1KTZ B;  3U73 U;  4LFT A;  5DZ5 A;  5IMY C;  1LSI A;  1RL5 A;  3KFD I;  2VLW A;  1CDS A;  1NTN A;  2X8B B;  1KBS A;  2ERA A;  1G6M A;  1JGK A;  4UY2 C;  4DO8 A;  4HQP F;  2H7Z A;  3NH7 A;  2QJB C;  1ES7 B;  1ONJ A;  1KBT A;  4OM4 A;  5DU1 A;  3QB4 B;  3U74 U;  1CXO A;  1HAA A;  1QKE A;  3HH7 A;  1MAH F;  1TXB A;  1VB0 A;  1M9Z A;  2JQP A;  4BIK B;  1COE A;  1FSS B;  1NEA A;  1CTX A;  1V6P A;  1IDH A;  1YWH A;  1FRA A;  2OFS A;  1KFH A;  1FF4 A; 
#chains in the Genus database with same CATH homology
 5DO6 A;  6EBX A;  1TFS A;  3LAQ U;  4KSN A;  1ERG A;  1FFJ A;  3BT2 U;  1F94 A;  1CCQ A;  1DRS A;  2LA1 A;  1F8U B;  1LX5 B;  1TGX A;  2QJ9 C;  1HOY A;  2H64 C;  5IMT D;  3FEV A;  2MUO A;  1MR6 A;  2PJY C;  1FSC A;  3NEQ A;  2JVE A;  1BTE A;  1JBD A;  1KS6 A;  1IK8 A;  2HLR A;  1UG4 A;  2CDX A;  1IDI A;  1RGJ A;  1LXH A;  1ABT A;  4ZQY A;  1JE9 A;  2L5S A;  1QKD A;  2BTX A;  2H5F A;  2MHY A;  2UWR A;  4FAO E;  4EY8 B;  1QM7 A;  1TXA A;  2H62 C;  2BHI A;  1IDG A;  1I02 A;  4P7U A;  2CCX A;  1CRE A;  2I9B E;  1NXB A;  1CDT A;  1CB9 A;  1REW C;  1FAS A;  1NYU A;  2H64 B;  4FAO C;  1CDR A;  2PJY B;  1XT3 A;  2GOO C;  2QJA C;  2N99 A;  1IDL A;  3EVS C;  1HAJ A;  1LXG A;  2J8B A;  2MJY A;  1NOR A;  2L03 A;  1B41 B;  3ERA A;  1ERA A;  2MUP A;  3PLC A;  1IQ9 A;  1W6B A;  2CTX A;  1S4Y A;  1ZAD A;  4AEA A;  1BXP A;  1CHV S;  2MJ0 A;  1KU6 B;  2ABX A;  1H0J A;  2H7Z B;  4XJJ A;  1CVO A;  1KC4 A;  3NDS A;  3VTS A;  1KBA A;  2NBT A;  1PLO A;  1IJC A;  1COD A;  1NTX A;  2H62 D;  4QTI U;  2FD6 U;  1KXI A;  2MJ4 A;  5EBX A;  2LCR A;  2MFA A;  2H8U A;  1CDQ A;  3EBX A;  1KL8 A;  1LJZ A;  2QC1 A;  1IKC A;  4IYE A;  1CRF A;  2K3G A;  2UX2 A;  3KFD E;  2HLQ A;  4OM5 A;  2GOO B;  4RUD A;  2CRS A;  1NYS A;  3BT1 U;  1L4W A;  1HC9 B;  1HC9 A;  1CXN A;  4BDT B;  2CRT A;  1KTZ B;  3U73 U;  4LFT A;  5DZ5 A;  5IMY C;  1LSI A;  1RL5 A;  3KFD I;  2VLW A;  1CDS A;  1NTN A;  2X8B B;  1KBS A;  2ERA A;  1G6M A;  1JGK A;  4UY2 C;  4DO8 A;  4HQP F;  2H7Z A;  3NH7 A;  2QJB C;  1ES7 B;  1ONJ A;  1KBT A;  4OM4 A;  5DU1 A;  3QB4 B;  3U74 U;  1CXO A;  1HAA A;  1QKE A;  3HH7 A;  1MAH F;  1TXB A;  1VB0 A;  1M9Z A;  2JQP A;  4BIK B;  1COE A;  1FSS B;  1NEA A;  1CTX A;  1V6P A;  1IDH A;  1YWH A;  1FRA A;  2OFS A;  1KFH A;  1FF4 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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