1COEA

Solution conformation of cobrotoxin: a nuclear magnetic resonance and hybrid distance geometry-dynamical simulated annealing study
Total Genus 5
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
5
sequence length
62
structure length
62
Chain Sequence
LECHNQQSSQTPTTTGCSGGETNCYKKRWRDHRGYRTERGCGCPSVKNGIEINCCTTDRCNN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Short neurotoxin
molecule keywords COBROTOXIN
publication title Solution conformation of cobrotoxin: a nuclear magnetic resonance and hybrid distance geometry-dynamical simulated annealing study.
pubmed doi rcsb
source organism Naja atra
total genus 5
structure length 62
sequence length 62
ec nomenclature
pdb deposition date 1994-05-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00087 Toxin_TOLIP Snake toxin and toxin-like protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.60.10 Mainly Beta Ribbon CD59 CD59 1coeA00
1LXGA 2N99A 1KU6B 1KBAA 1KBSA 1BXPA 1M9ZA 1JE9A 4BIKB 1HAJA 1IQ9A 1CTXA 1FASA 1QKEA 2GOOB 2JVEA 4ZQYA 2UWRA 2H8UA 3FEVA 1CB9A 2MJ4A 2LA1A 1LSIA 1ERAA 5DU1A 1NEAA 1LXHA 3NH7A 1ERGA 1QM7A 1TFSA 1YWHA 2CRSA 1ABTA 1FF4A 1IKCA 1CREA 1H0JA 2J8BA 2QJBC 3VTSA 4FAOC 3QB4B 4XJJA 1HOYA 6EBXA 1REWC 3NDSA 1CODA 1FSSB 1IDGA 1MAHF 1NYSA 2H5FA 3U74U 3LAQU 2OFSA 4LFTA 2QJAC 4AEAA 4RUDA 2HLRA 2MUOA 4EY8B 2MHYA 2NBTA 1RGJA 4FAOE 1I02A 2JQPA 3ERAA 1VB0A 4BDTB 1ZADA 4IYEA 2MFAA 2L5SA 1KC4A 1KTZB 1FRAA 1CRFA 1NTXA 2MUPA 2X8BB 3EBXA 1UG4A 5IMTD 2L03A 1CDTA 2BTXA 1B41B 1S4YA 1HC9A 1JBDA 1CXOA 1FSCA 2ABXA 2CDXA 1KS6A 2FD6U 1HC9B 2CCXA 5DO6A 1COEA 1G6MA 1L4WA 2MJYA 2ERAA 3KFDI 5EBXA 2LCRA 5IMYC 1FFJA 1IK8A 3EVSC 2I9BE 2H62C 1CXNA 1KBTA 1KFHA 1TXAA 2H64C 2CTXA 4P7UA 1F94A 1IJCA 1ES7B 1XT3A 3HH7A 3PLCA 1HAAA 5DZ5A 1CDQA 1TXBA 4DO8A 2CRTA 2PJYC 1W6BA 1NYUA 1KXIA 1CVOA 2H64B 1CDRA 1BTEA 2QJ9C 2K3GA 2HLQA 1F8UB 3NEQA 1CDSA 1JGKA 3U73U 2PJYB 3BT2U 1NTNA 1KL8A 2VLWA 1V6PA 4HQPF 1CCQA 4QTIU 1MR6A 2H7ZA 1NXBA 1IDHA 3KFDE 1LJZA 4UY2C 2H62D 2H7ZB 1RL5A 2BHIA 1IDIA 1CHVS 4OM5A 1DRSA 2MJ0A 1PLOA 1ONJA 2QC1A 1TGXA 1LX5B 1NORA 3BT1U 1IDLA 2UX2A 1QKDA 4OM4A 2GOOC
chains in the Genus database with same CATH superfamily
1LXGA 2N99A 1KU6B 1KBAA 1KBSA 1BXPA 1M9ZA 1JE9A 4BIKB 1HAJA 1IQ9A 1CTXA 1FASA 1QKEA 2GOOB 2JVEA 4ZQYA 2UWRA 2H8UA 3FEVA 1CB9A 2MJ4A 2LA1A 1LSIA 1ERAA 5DU1A 1NEAA 1LXHA 3NH7A 1ERGA 1QM7A 1TFSA 1YWHA 2CRSA 1ABTA 1FF4A 1IKCA 1CREA 1H0JA 2J8BA 2QJBC 3VTSA 4FAOC 3QB4B 4XJJA 1HOYA 6EBXA 1REWC 3NDSA 1CODA 1FSSB 1IDGA 1MAHF 1NYSA 2H5FA 3U74U 3LAQU 2OFSA 4LFTA 2QJAC 4AEAA 4RUDA 2HLRA 2MUOA 4EY8B 2MHYA 2NBTA 1RGJA 4FAOE 1I02A 2JQPA 3ERAA 1VB0A 4BDTB 1ZADA 4IYEA 2MFAA 2L5SA 1KC4A 1KTZB 1FRAA 1CRFA 1NTXA 2MUPA 2X8BB 3EBXA 1UG4A 5IMTD 2L03A 1CDTA 2BTXA 1B41B 1S4YA 1HC9A 1JBDA 1CXOA 1FSCA 2ABXA 2CDXA 1KS6A 2FD6U 1HC9B 2CCXA 5DO6A 1COEA 1G6MA 1L4WA 2MJYA 2ERAA 3KFDI 5EBXA 2LCRA 5IMYC 1FFJA 1IK8A 3EVSC 2I9BE 4KSNA 2H62C 1CXNA 1KBTA 1KFHA 1TXAA 2H64C 2CTXA 4P7UA 1F94A 1IJCA 1ES7B 1XT3A 3HH7A 3PLCA 1HAAA 5DZ5A 1CDQA 1TXBA 4DO8A 2CRTA 2PJYC 1W6BA 1NYUA 1KXIA 1CVOA 2H64B 1CDRA 1BTEA 2QJ9C 2K3GA 2HLQA 1F8UB 3NEQA 1CDSA 1JGKA 3U73U 2PJYB 3BT2U 1NTNA 1KL8A 2VLWA 1V6PA 4HQPF 1CCQA 4QTIU 1MR6A 2H7ZA 1NXBA 1IDHA 3KFDE 1LJZA 4UY2C 2H62D 2H7ZB 1RL5A 2BHIA 1IDIA 1CHVS 4OM5A 1DRSA 2MJ0A 1PLOA 1ONJA 2QC1A 1TGXA 1LX5B 1NORA 3BT1U 1IDLA 2UX2A 1QKDA 4OM4A 2GOOC
chains in the Genus database with same CATH topology
1LXGA 2N99A 1KU6B 1KBAA 1KBSA 1BXPA 1M9ZA 1JE9A 4BIKB 1HAJA 1IQ9A 1CTXA 1FASA 1QKEA 2GOOB 2JVEA 4ZQYA 2UWRA 2H8UA 3FEVA 1CB9A 2MJ4A 2LA1A 1LSIA 1ERAA 5DU1A 1NEAA 1LXHA 3NH7A 1ERGA 1QM7A 1TFSA 1YWHA 2CRSA 1ABTA 1FF4A 1IKCA 1CREA 1H0JA 2J8BA 2QJBC 3VTSA 4FAOC 3QB4B 4XJJA 1HOYA 6EBXA 1REWC 3NDSA 1CODA 1FSSB 1IDGA 1MAHF 1NYSA 2H5FA 3U74U 3LAQU 2OFSA 4LFTA 2QJAC 4AEAA 4RUDA 2HLRA 2MUOA 4EY8B 2MHYA 2NBTA 1RGJA 4FAOE 1I02A 2JQPA 3ERAA 1VB0A 4BDTB 1ZADA 4IYEA 2MFAA 2L5SA 1KC4A 1KTZB 1FRAA 1CRFA 1NTXA 2MUPA 2X8BB 3EBXA 1UG4A 5IMTD 2L03A 1CDTA 2BTXA 1B41B 1S4YA 1HC9A 1JBDA 1CXOA 1FSCA 2ABXA 2CDXA 1KS6A 2FD6U 1HC9B 2CCXA 5DO6A 1COEA 1G6MA 1L4WA 2MJYA 2ERAA 3KFDI 5EBXA 2LCRA 5IMYC 1FFJA 1IK8A 3EVSC 2I9BE 4KSNA 2H62C 1CXNA 1KBTA 1KFHA 1TXAA 2H64C 2CTXA 4P7UA 1F94A 1IJCA 1ES7B 1XT3A 3HH7A 3PLCA 1HAAA 5DZ5A 1CDQA 1TXBA 4DO8A 2CRTA 2PJYC 1W6BA 1NYUA 1KXIA 1CVOA 2H64B 1CDRA 1BTEA 2QJ9C 2K3GA 2HLQA 1F8UB 3NEQA 1CDSA 1JGKA 3U73U 2PJYB 3BT2U 1NTNA 1KL8A 2VLWA 1V6PA 4HQPF 1CCQA 4QTIU 1MR6A 2H7ZA 1NXBA 1IDHA 3KFDE 1LJZA 4UY2C 2H62D 2H7ZB 1RL5A 2BHIA 1IDIA 1CHVS 4OM5A 1DRSA 2MJ0A 1PLOA 1ONJA 2QC1A 1TGXA 1LX5B 1NORA 3BT1U 1IDLA 2UX2A 1QKDA 4OM4A 2GOOC
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1LXG A;  2N99 A;  1KU6 B;  1KBA A;  1KBS A;  1BXP A;  1M9Z A;  1JE9 A;  4BIK B;  1HAJ A;  1IQ9 A;  1CTX A;  1FAS A;  1QKE A;  2GOO B;  2JVE A;  4ZQY A;  2UWR A;  2H8U A;  3FEV A;  1CB9 A;  2MJ4 A;  2LA1 A;  1LSI A;  1ERA A;  5DU1 A;  1NEA A;  1LXH A;  3NH7 A;  1ERG A;  1QM7 A;  1TFS A;  1YWH A;  2CRS A;  1ABT A;  1FF4 A;  1IKC A;  1CRE A;  1H0J A;  2J8B A;  2QJB C;  3VTS A;  4FAO C;  3QB4 B;  4XJJ A;  1HOY A;  6EBX A;  1REW C;  3NDS A;  1COD A;  1FSS B;  1IDG A;  1MAH F;  1NYS A;  2H5F A;  3U74 U;  3LAQ U;  2OFS A;  4LFT A;  2QJA C;  4AEA A;  4RUD A;  2HLR A;  2MUO A;  4EY8 B;  2MHY A;  2NBT A;  1RGJ A;  4FAO E;  1I02 A;  2JQP A;  3ERA A;  1VB0 A;  4BDT B;  1ZAD A;  4IYE A;  2MFA A;  2L5S A;  1KC4 A;  1KTZ B;  1FRA A;  1CRF A;  1NTX A;  2MUP A;  2X8B B;  3EBX A;  1UG4 A;  5IMT D;  2L03 A;  1CDT A;  2BTX A;  1B41 B;  1S4Y A;  1HC9 A;  1JBD A;  1CXO A;  1FSC A;  2ABX A;  2CDX A;  1KS6 A;  2FD6 U;  1HC9 B;  2CCX A;  5DO6 A;  1COE A;  1G6M A;  1L4W A;  2MJY A;  2ERA A;  3KFD I;  5EBX A;  2LCR A;  5IMY C;  1FFJ A;  1IK8 A;  3EVS C;  2I9B E;  2H62 C;  1CXN A;  1KBT A;  1KFH A;  1TXA A;  2H64 C;  2CTX A;  4P7U A;  1F94 A;  1IJC A;  1ES7 B;  1XT3 A;  3HH7 A;  3PLC A;  1HAA A;  5DZ5 A;  1CDQ A;  1TXB A;  4DO8 A;  2CRT A;  2PJY C;  1W6B A;  1NYU A;  1KXI A;  1CVO A;  2H64 B;  1CDR A;  1BTE A;  2QJ9 C;  2K3G A;  2HLQ A;  1F8U B;  3NEQ A;  1CDS A;  1JGK A;  3U73 U;  2PJY B;  3BT2 U;  1NTN A;  1KL8 A;  2VLW A;  1V6P A;  4HQP F;  1CCQ A;  4QTI U;  1MR6 A;  2H7Z A;  1NXB A;  1IDH A;  3KFD E;  1LJZ A;  4UY2 C;  2H62 D;  2H7Z B;  1RL5 A;  2BHI A;  1IDI A;  1CHV S;  4OM5 A;  1DRS A;  2MJ0 A;  1PLO A;  1ONJ A;  2QC1 A;  1TGX A;  1LX5 B;  1NOR A;  3BT1 U;  1IDL A;  2UX2 A;  1QKD A;  4OM4 A;  2GOO C; 
#chains in the Genus database with same CATH topology
 1LXG A;  2N99 A;  1KU6 B;  1KBA A;  1KBS A;  1BXP A;  1M9Z A;  1JE9 A;  4BIK B;  1HAJ A;  1IQ9 A;  1CTX A;  1FAS A;  1QKE A;  2GOO B;  2JVE A;  4ZQY A;  2UWR A;  2H8U A;  3FEV A;  1CB9 A;  2MJ4 A;  2LA1 A;  1LSI A;  1ERA A;  5DU1 A;  1NEA A;  1LXH A;  3NH7 A;  1ERG A;  1QM7 A;  1TFS A;  1YWH A;  2CRS A;  1ABT A;  1FF4 A;  1IKC A;  1CRE A;  1H0J A;  2J8B A;  2QJB C;  3VTS A;  4FAO C;  3QB4 B;  4XJJ A;  1HOY A;  6EBX A;  1REW C;  3NDS A;  1COD A;  1FSS B;  1IDG A;  1MAH F;  1NYS A;  2H5F A;  3U74 U;  3LAQ U;  2OFS A;  4LFT A;  2QJA C;  4AEA A;  4RUD A;  2HLR A;  2MUO A;  4EY8 B;  2MHY A;  2NBT A;  1RGJ A;  4FAO E;  1I02 A;  2JQP A;  3ERA A;  1VB0 A;  4BDT B;  1ZAD A;  4IYE A;  2MFA A;  2L5S A;  1KC4 A;  1KTZ B;  1FRA A;  1CRF A;  1NTX A;  2MUP A;  2X8B B;  3EBX A;  1UG4 A;  5IMT D;  2L03 A;  1CDT A;  2BTX A;  1B41 B;  1S4Y A;  1HC9 A;  1JBD A;  1CXO A;  1FSC A;  2ABX A;  2CDX A;  1KS6 A;  2FD6 U;  1HC9 B;  2CCX A;  5DO6 A;  1COE A;  1G6M A;  1L4W A;  2MJY A;  2ERA A;  3KFD I;  5EBX A;  2LCR A;  5IMY C;  1FFJ A;  1IK8 A;  3EVS C;  2I9B E;  4KSN A;  2H62 C;  1CXN A;  1KBT A;  1KFH A;  1TXA A;  2H64 C;  2CTX A;  4P7U A;  1F94 A;  1IJC A;  1ES7 B;  1XT3 A;  3HH7 A;  3PLC A;  1HAA A;  5DZ5 A;  1CDQ A;  1TXB A;  4DO8 A;  2CRT A;  2PJY C;  1W6B A;  1NYU A;  1KXI A;  1CVO A;  2H64 B;  1CDR A;  1BTE A;  2QJ9 C;  2K3G A;  2HLQ A;  1F8U B;  3NEQ A;  1CDS A;  1JGK A;  3U73 U;  2PJY B;  3BT2 U;  1NTN A;  1KL8 A;  2VLW A;  1V6P A;  4HQP F;  1CCQ A;  4QTI U;  1MR6 A;  2H7Z A;  1NXB A;  1IDH A;  3KFD E;  1LJZ A;  4UY2 C;  2H62 D;  2H7Z B;  1RL5 A;  2BHI A;  1IDI A;  1CHV S;  4OM5 A;  1DRS A;  2MJ0 A;  1PLO A;  1ONJ A;  2QC1 A;  1TGX A;  1LX5 B;  1NOR A;  3BT1 U;  1IDL A;  2UX2 A;  1QKD A;  4OM4 A;  2GOO C; 
#chains in the Genus database with same CATH homology
 1LXG A;  2N99 A;  1KU6 B;  1KBA A;  1KBS A;  1BXP A;  1M9Z A;  1JE9 A;  4BIK B;  1HAJ A;  1IQ9 A;  1CTX A;  1FAS A;  1QKE A;  2GOO B;  2JVE A;  4ZQY A;  2UWR A;  2H8U A;  3FEV A;  1CB9 A;  2MJ4 A;  2LA1 A;  1LSI A;  1ERA A;  5DU1 A;  1NEA A;  1LXH A;  3NH7 A;  1ERG A;  1QM7 A;  1TFS A;  1YWH A;  2CRS A;  1ABT A;  1FF4 A;  1IKC A;  1CRE A;  1H0J A;  2J8B A;  2QJB C;  3VTS A;  4FAO C;  3QB4 B;  4XJJ A;  1HOY A;  6EBX A;  1REW C;  3NDS A;  1COD A;  1FSS B;  1IDG A;  1MAH F;  1NYS A;  2H5F A;  3U74 U;  3LAQ U;  2OFS A;  4LFT A;  2QJA C;  4AEA A;  4RUD A;  2HLR A;  2MUO A;  4EY8 B;  2MHY A;  2NBT A;  1RGJ A;  4FAO E;  1I02 A;  2JQP A;  3ERA A;  1VB0 A;  4BDT B;  1ZAD A;  4IYE A;  2MFA A;  2L5S A;  1KC4 A;  1KTZ B;  1FRA A;  1CRF A;  1NTX A;  2MUP A;  2X8B B;  3EBX A;  1UG4 A;  5IMT D;  2L03 A;  1CDT A;  2BTX A;  1B41 B;  1S4Y A;  1HC9 A;  1JBD A;  1CXO A;  1FSC A;  2ABX A;  2CDX A;  1KS6 A;  2FD6 U;  1HC9 B;  2CCX A;  5DO6 A;  1COE A;  1G6M A;  1L4W A;  2MJY A;  2ERA A;  3KFD I;  5EBX A;  2LCR A;  5IMY C;  1FFJ A;  1IK8 A;  3EVS C;  2I9B E;  4KSN A;  2H62 C;  1CXN A;  1KBT A;  1KFH A;  1TXA A;  2H64 C;  2CTX A;  4P7U A;  1F94 A;  1IJC A;  1ES7 B;  1XT3 A;  3HH7 A;  3PLC A;  1HAA A;  5DZ5 A;  1CDQ A;  1TXB A;  4DO8 A;  2CRT A;  2PJY C;  1W6B A;  1NYU A;  1KXI A;  1CVO A;  2H64 B;  1CDR A;  1BTE A;  2QJ9 C;  2K3G A;  2HLQ A;  1F8U B;  3NEQ A;  1CDS A;  1JGK A;  3U73 U;  2PJY B;  3BT2 U;  1NTN A;  1KL8 A;  2VLW A;  1V6P A;  4HQP F;  1CCQ A;  4QTI U;  1MR6 A;  2H7Z A;  1NXB A;  1IDH A;  3KFD E;  1LJZ A;  4UY2 C;  2H62 D;  2H7Z B;  1RL5 A;  2BHI A;  1IDI A;  1CHV S;  4OM5 A;  1DRS A;  2MJ0 A;  1PLO A;  1ONJ A;  2QC1 A;  1TGX A;  1LX5 B;  1NOR A;  3BT1 U;  1IDL A;  2UX2 A;  1QKD A;  4OM4 A;  2GOO C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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