1COEA

Solution conformation of cobrotoxin: a nuclear magnetic resonance and hybrid distance geometry-dynamical simulated annealing study
Total Genus 5
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
5
sequence length
62
structure length
62
Chain Sequence
LECHNQQSSQTPTTTGCSGGETNCYKKRWRDHRGYRTERGCGCPSVKNGIEINCCTTDRCNN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Short neurotoxin
molecule keywords COBROTOXIN
publication title Solution conformation of cobrotoxin: a nuclear magnetic resonance and hybrid distance geometry-dynamical simulated annealing study.
pubmed doi rcsb
source organism Naja atra
total genus 5
structure length 62
sequence length 62
ec nomenclature
pdb deposition date 1994-05-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00087 Toxin_TOLIP Snake toxin and toxin-like protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.60.10 Mainly Beta Ribbon CD59 CD59 1coeA00
2PJYC 3EBXA 3U73U 1COEA 2H7ZA 1F8UB 1RL5A 1CHVS 3KFDI 2CDXA 1FASA 3FEVA 1REWC 1XT3A 2ERAA 2ABXA 1H0JA 1LJZA 4XJJA 3ERAA 3PLCA 1KBAA 3EVSC 1CODA 1ES7B 1CCQA 1BTEA 1B41B 3HH7A 1IDLA 1W6BA 1CXNA 2MUOA 2N99A 5DO6A 2L03A 1JE9A 1KC4A 1TXBA 2MFAA 1KXIA 1HC9A 2X8BB 1QKDA 1QM7A 5IMYC 1HAAA 1FSCA 1VB0A 1YWHA 1CVOA 1I02A 2L5SA 1CDQA 1HAJA 1CDTA 1QKEA 4UY2C 2LCRA 1ABTA 2QJBC 1S4YA 1NYSA 2MHYA 1LXGA 2CRSA 2HLRA 3NH7A 2GOOC 2JVEA 4FAOC 1LSIA 1CRFA 4DO8A 2H8UA 1IK8A 4QTIU 6EBXA 5DZ5A 2NBTA 2QC1A 1CDRA 1KBTA 5EBXA 2CTXA 2LA1A 3KFDE 1LXHA 2FD6U 1CREA 1ERGA 1RGJA 1FSSB 4RUDA 1F94A 1TGXA 2UX2A 1UG4A 1L4WA 1ONJA 2H62C 1FFJA 1KBSA 2BTXA 3LAQU 3NEQA 2J8BA 3QB4B 2VLWA 4OM4A 2UWRA 3BT1U 2BHIA 1NTNA 1KTZB 4FAOE 3NDSA 2CCXA 3VTSA 1NTXA 2MUPA 2I9BE 1TXAA 1CDSA 1KS6A 1M9ZA 1NEAA 2CRTA 1FF4A 1MAHF 1PLOA 1IKCA 3BT2U 2H64B 1DRSA 1NXBA 1FRAA 1G6MA 2H7ZB 1IJCA 5DU1A 1NYUA 4ZQYA 1MR6A 1CB9A 1CXOA 4BDTB 5IMTD 1JBDA 4HQPF 2H62D 4BIKB 1IDIA 2JQPA 2K3GA 2PJYB 4IYEA 2MJ4A 1HOYA 1NORA 1IDGA 1ZADA 1LX5B 2OFSA 1KU6B 2MJ0A 1CTXA 2QJ9C 1V6PA 4AEAA 2GOOB 4OM5A 4EY8B 1BXPA 2H64C 3U74U 1ERAA 4P7UA 1HC9B 2H5FA 1TFSA 2HLQA 2MJYA 1JGKA 2QJAC 1IDHA 1KL8A 4LFTA 1IQ9A 1KFHA
chains in the Genus database with same CATH superfamily
2PJYC 3EBXA 3U73U 1COEA 2H7ZA 1F8UB 1RL5A 1CHVS 3KFDI 2CDXA 1FASA 3FEVA 1REWC 1XT3A 2ERAA 2ABXA 1H0JA 1LJZA 4XJJA 3ERAA 3PLCA 1KBAA 3EVSC 1CODA 1ES7B 1CCQA 1BTEA 1B41B 3HH7A 1IDLA 1W6BA 1CXNA 2MUOA 2N99A 5DO6A 2L03A 1JE9A 1KC4A 1TXBA 2MFAA 1KXIA 1HC9A 2X8BB 1QKDA 1QM7A 5IMYC 1HAAA 1FSCA 1VB0A 1YWHA 1CVOA 1I02A 2L5SA 1CDQA 1HAJA 1CDTA 1QKEA 4UY2C 2LCRA 1ABTA 2QJBC 1S4YA 1NYSA 2MHYA 1LXGA 2CRSA 2HLRA 3NH7A 2GOOC 2JVEA 4FAOC 1LSIA 1CRFA 4DO8A 2H8UA 1IK8A 4QTIU 6EBXA 5DZ5A 2NBTA 2QC1A 1CDRA 1KBTA 5EBXA 2CTXA 2LA1A 3KFDE 1LXHA 2FD6U 1CREA 1ERGA 1RGJA 1FSSB 4RUDA 1F94A 1TGXA 2UX2A 1UG4A 1L4WA 1ONJA 2H62C 1FFJA 1KBSA 2BTXA 3LAQU 3NEQA 2J8BA 3QB4B 2VLWA 4OM4A 2UWRA 3BT1U 2BHIA 1NTNA 1KTZB 4FAOE 3NDSA 2CCXA 3VTSA 1NTXA 2MUPA 2I9BE 1TXAA 1CDSA 1KS6A 1M9ZA 1NEAA 2CRTA 1FF4A 1MAHF 1PLOA 4KSNA 3BT2U 2H64B 1IKCA 1DRSA 1NXBA 1FRAA 1G6MA 2H7ZB 1IJCA 5DU1A 1NYUA 4ZQYA 1MR6A 1CB9A 1CXOA 4BDTB 5IMTD 1JBDA 4HQPF 2H62D 4BIKB 1IDIA 2JQPA 2K3GA 2PJYB 4IYEA 2MJ4A 1HOYA 1NORA 1IDGA 1ZADA 1LX5B 2OFSA 1KU6B 2MJ0A 1CTXA 2QJ9C 1V6PA 4AEAA 2GOOB 4OM5A 4EY8B 1BXPA 2H64C 3U74U 1ERAA 4P7UA 1HC9B 2H5FA 1TFSA 2HLQA 2MJYA 1JGKA 2QJAC 1IDHA 1KL8A 4LFTA 1IQ9A 1KFHA
chains in the Genus database with same CATH topology
2PJYC 3EBXA 3U73U 1COEA 2H7ZA 1F8UB 1RL5A 1CHVS 3KFDI 2CDXA 1FASA 3FEVA 1REWC 1XT3A 2ERAA 2ABXA 1H0JA 1LJZA 4XJJA 3ERAA 3PLCA 1KBAA 3EVSC 1CODA 1ES7B 1CCQA 1BTEA 1B41B 3HH7A 1IDLA 1W6BA 1CXNA 2MUOA 2N99A 5DO6A 2L03A 1JE9A 1KC4A 1TXBA 2MFAA 1KXIA 1HC9A 2X8BB 1QKDA 1QM7A 5IMYC 1HAAA 1FSCA 1VB0A 1YWHA 1CVOA 1I02A 2L5SA 1CDQA 1HAJA 1CDTA 1QKEA 4UY2C 2LCRA 1ABTA 2QJBC 1S4YA 1NYSA 2MHYA 1LXGA 2CRSA 2HLRA 3NH7A 2GOOC 2JVEA 4FAOC 1LSIA 1CRFA 4DO8A 2H8UA 1IK8A 4QTIU 6EBXA 5DZ5A 2NBTA 2QC1A 1CDRA 1KBTA 5EBXA 2CTXA 2LA1A 3KFDE 1LXHA 2FD6U 1CREA 1ERGA 1RGJA 1FSSB 4RUDA 1F94A 1TGXA 2UX2A 1UG4A 1L4WA 1ONJA 2H62C 1FFJA 1KBSA 2BTXA 3LAQU 3NEQA 2J8BA 3QB4B 2VLWA 4OM4A 2UWRA 3BT1U 2BHIA 1NTNA 1KTZB 4FAOE 3NDSA 2CCXA 3VTSA 1NTXA 2MUPA 2I9BE 1TXAA 1CDSA 1KS6A 1M9ZA 1NEAA 2CRTA 1FF4A 1MAHF 1PLOA 4KSNA 3BT2U 2H64B 1IKCA 1DRSA 1NXBA 1FRAA 1G6MA 2H7ZB 1IJCA 5DU1A 1NYUA 4ZQYA 1MR6A 1CB9A 1CXOA 4BDTB 5IMTD 1JBDA 4HQPF 2H62D 4BIKB 1IDIA 2JQPA 2K3GA 2PJYB 4IYEA 2MJ4A 1HOYA 1NORA 1IDGA 1ZADA 1LX5B 2OFSA 1KU6B 2MJ0A 1CTXA 2QJ9C 1V6PA 4AEAA 2GOOB 4OM5A 4EY8B 1BXPA 2H64C 3U74U 1ERAA 4P7UA 1HC9B 2H5FA 1TFSA 2HLQA 2MJYA 1JGKA 2QJAC 1IDHA 1KL8A 4LFTA 1IQ9A 1KFHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2PJY C;  3EBX A;  3U73 U;  1COE A;  2H7Z A;  1F8U B;  1RL5 A;  1CHV S;  3KFD I;  2CDX A;  1FAS A;  3FEV A;  1REW C;  1XT3 A;  2ERA A;  2ABX A;  1H0J A;  1LJZ A;  4XJJ A;  3ERA A;  3PLC A;  1KBA A;  3EVS C;  1COD A;  1ES7 B;  1CCQ A;  1BTE A;  1B41 B;  3HH7 A;  1IDL A;  1W6B A;  1CXN A;  2MUO A;  2N99 A;  5DO6 A;  2L03 A;  1JE9 A;  1KC4 A;  1TXB A;  2MFA A;  1KXI A;  1HC9 A;  2X8B B;  1QKD A;  1QM7 A;  5IMY C;  1HAA A;  1FSC A;  1VB0 A;  1YWH A;  1CVO A;  1I02 A;  2L5S A;  1CDQ A;  1HAJ A;  1CDT A;  1QKE A;  4UY2 C;  2LCR A;  1ABT A;  2QJB C;  1S4Y A;  1NYS A;  2MHY A;  1LXG A;  2CRS A;  2HLR A;  3NH7 A;  2GOO C;  2JVE A;  4FAO C;  1LSI A;  1CRF A;  4DO8 A;  2H8U A;  1IK8 A;  4QTI U;  6EBX A;  5DZ5 A;  2NBT A;  2QC1 A;  1CDR A;  1KBT A;  5EBX A;  2CTX A;  2LA1 A;  3KFD E;  1LXH A;  2FD6 U;  1CRE A;  1ERG A;  1RGJ A;  1FSS B;  4RUD A;  1F94 A;  1TGX A;  2UX2 A;  1UG4 A;  1L4W A;  1ONJ A;  2H62 C;  1FFJ A;  1KBS A;  2BTX A;  3LAQ U;  3NEQ A;  2J8B A;  3QB4 B;  2VLW A;  4OM4 A;  2UWR A;  3BT1 U;  2BHI A;  1NTN A;  1KTZ B;  4FAO E;  3NDS A;  2CCX A;  3VTS A;  1NTX A;  2MUP A;  2I9B E;  1TXA A;  1CDS A;  1KS6 A;  1M9Z A;  1NEA A;  2CRT A;  1FF4 A;  1MAH F;  1PLO A;  1IKC A;  3BT2 U;  2H64 B;  1DRS A;  1NXB A;  1FRA A;  1G6M A;  2H7Z B;  1IJC A;  5DU1 A;  1NYU A;  4ZQY A;  1MR6 A;  1CB9 A;  1CXO A;  4BDT B;  5IMT D;  1JBD A;  4HQP F;  2H62 D;  4BIK B;  1IDI A;  2JQP A;  2K3G A;  2PJY B;  4IYE A;  2MJ4 A;  1HOY A;  1NOR A;  1IDG A;  1ZAD A;  1LX5 B;  2OFS A;  1KU6 B;  2MJ0 A;  1CTX A;  2QJ9 C;  1V6P A;  4AEA A;  2GOO B;  4OM5 A;  4EY8 B;  1BXP A;  2H64 C;  3U74 U;  1ERA A;  4P7U A;  1HC9 B;  2H5F A;  1TFS A;  2HLQ A;  2MJY A;  1JGK A;  2QJA C;  1IDH A;  1KL8 A;  4LFT A;  1IQ9 A;  1KFH A; 
#chains in the Genus database with same CATH topology
 2PJY C;  3EBX A;  3U73 U;  1COE A;  2H7Z A;  1F8U B;  1RL5 A;  1CHV S;  3KFD I;  2CDX A;  1FAS A;  3FEV A;  1REW C;  1XT3 A;  2ERA A;  2ABX A;  1H0J A;  1LJZ A;  4XJJ A;  3ERA A;  3PLC A;  1KBA A;  3EVS C;  1COD A;  1ES7 B;  1CCQ A;  1BTE A;  1B41 B;  3HH7 A;  1IDL A;  1W6B A;  1CXN A;  2MUO A;  2N99 A;  5DO6 A;  2L03 A;  1JE9 A;  1KC4 A;  1TXB A;  2MFA A;  1KXI A;  1HC9 A;  2X8B B;  1QKD A;  1QM7 A;  5IMY C;  1HAA A;  1FSC A;  1VB0 A;  1YWH A;  1CVO A;  1I02 A;  2L5S A;  1CDQ A;  1HAJ A;  1CDT A;  1QKE A;  4UY2 C;  2LCR A;  1ABT A;  2QJB C;  1S4Y A;  1NYS A;  2MHY A;  1LXG A;  2CRS A;  2HLR A;  3NH7 A;  2GOO C;  2JVE A;  4FAO C;  1LSI A;  1CRF A;  4DO8 A;  2H8U A;  1IK8 A;  4QTI U;  6EBX A;  5DZ5 A;  2NBT A;  2QC1 A;  1CDR A;  1KBT A;  5EBX A;  2CTX A;  2LA1 A;  3KFD E;  1LXH A;  2FD6 U;  1CRE A;  1ERG A;  1RGJ A;  1FSS B;  4RUD A;  1F94 A;  1TGX A;  2UX2 A;  1UG4 A;  1L4W A;  1ONJ A;  2H62 C;  1FFJ A;  1KBS A;  2BTX A;  3LAQ U;  3NEQ A;  2J8B A;  3QB4 B;  2VLW A;  4OM4 A;  2UWR A;  3BT1 U;  2BHI A;  1NTN A;  1KTZ B;  4FAO E;  3NDS A;  2CCX A;  3VTS A;  1NTX A;  2MUP A;  2I9B E;  1TXA A;  1CDS A;  1KS6 A;  1M9Z A;  1NEA A;  2CRT A;  1FF4 A;  1MAH F;  1PLO A;  4KSN A;  3BT2 U;  2H64 B;  1IKC A;  1DRS A;  1NXB A;  1FRA A;  1G6M A;  2H7Z B;  1IJC A;  5DU1 A;  1NYU A;  4ZQY A;  1MR6 A;  1CB9 A;  1CXO A;  4BDT B;  5IMT D;  1JBD A;  4HQP F;  2H62 D;  4BIK B;  1IDI A;  2JQP A;  2K3G A;  2PJY B;  4IYE A;  2MJ4 A;  1HOY A;  1NOR A;  1IDG A;  1ZAD A;  1LX5 B;  2OFS A;  1KU6 B;  2MJ0 A;  1CTX A;  2QJ9 C;  1V6P A;  4AEA A;  2GOO B;  4OM5 A;  4EY8 B;  1BXP A;  2H64 C;  3U74 U;  1ERA A;  4P7U A;  1HC9 B;  2H5F A;  1TFS A;  2HLQ A;  2MJY A;  1JGK A;  2QJA C;  1IDH A;  1KL8 A;  4LFT A;  1IQ9 A;  1KFH A; 
#chains in the Genus database with same CATH homology
 2PJY C;  3EBX A;  3U73 U;  1COE A;  2H7Z A;  1F8U B;  1RL5 A;  1CHV S;  3KFD I;  2CDX A;  1FAS A;  3FEV A;  1REW C;  1XT3 A;  2ERA A;  2ABX A;  1H0J A;  1LJZ A;  4XJJ A;  3ERA A;  3PLC A;  1KBA A;  3EVS C;  1COD A;  1ES7 B;  1CCQ A;  1BTE A;  1B41 B;  3HH7 A;  1IDL A;  1W6B A;  1CXN A;  2MUO A;  2N99 A;  5DO6 A;  2L03 A;  1JE9 A;  1KC4 A;  1TXB A;  2MFA A;  1KXI A;  1HC9 A;  2X8B B;  1QKD A;  1QM7 A;  5IMY C;  1HAA A;  1FSC A;  1VB0 A;  1YWH A;  1CVO A;  1I02 A;  2L5S A;  1CDQ A;  1HAJ A;  1CDT A;  1QKE A;  4UY2 C;  2LCR A;  1ABT A;  2QJB C;  1S4Y A;  1NYS A;  2MHY A;  1LXG A;  2CRS A;  2HLR A;  3NH7 A;  2GOO C;  2JVE A;  4FAO C;  1LSI A;  1CRF A;  4DO8 A;  2H8U A;  1IK8 A;  4QTI U;  6EBX A;  5DZ5 A;  2NBT A;  2QC1 A;  1CDR A;  1KBT A;  5EBX A;  2CTX A;  2LA1 A;  3KFD E;  1LXH A;  2FD6 U;  1CRE A;  1ERG A;  1RGJ A;  1FSS B;  4RUD A;  1F94 A;  1TGX A;  2UX2 A;  1UG4 A;  1L4W A;  1ONJ A;  2H62 C;  1FFJ A;  1KBS A;  2BTX A;  3LAQ U;  3NEQ A;  2J8B A;  3QB4 B;  2VLW A;  4OM4 A;  2UWR A;  3BT1 U;  2BHI A;  1NTN A;  1KTZ B;  4FAO E;  3NDS A;  2CCX A;  3VTS A;  1NTX A;  2MUP A;  2I9B E;  1TXA A;  1CDS A;  1KS6 A;  1M9Z A;  1NEA A;  2CRT A;  1FF4 A;  1MAH F;  1PLO A;  4KSN A;  3BT2 U;  2H64 B;  1IKC A;  1DRS A;  1NXB A;  1FRA A;  1G6M A;  2H7Z B;  1IJC A;  5DU1 A;  1NYU A;  4ZQY A;  1MR6 A;  1CB9 A;  1CXO A;  4BDT B;  5IMT D;  1JBD A;  4HQP F;  2H62 D;  4BIK B;  1IDI A;  2JQP A;  2K3G A;  2PJY B;  4IYE A;  2MJ4 A;  1HOY A;  1NOR A;  1IDG A;  1ZAD A;  1LX5 B;  2OFS A;  1KU6 B;  2MJ0 A;  1CTX A;  2QJ9 C;  1V6P A;  4AEA A;  2GOO B;  4OM5 A;  4EY8 B;  1BXP A;  2H64 C;  3U74 U;  1ERA A;  4P7U A;  1HC9 B;  2H5F A;  1TFS A;  2HLQ A;  2MJY A;  1JGK A;  2QJA C;  1IDH A;  1KL8 A;  4LFT A;  1IQ9 A;  1KFH A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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