1M9ZA

Crystal structure of human tgf-beta type ii receptor ligand binding domain
Total Genus 24
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
24
sequence length
105
structure length
105
Chain Sequence
ALCKFCDVRFSTCDNQKSCMSNCSITSICEKPQEVCVAVWRKNDENITLETVCHDPKLPYHDFILEDAASPTCIMKEKKKPGETFFMCSCSSDECNDNIIFSEEY
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hormone/growth factor
molecule keywords TGF-BETA RECEPTOR TYPE II
publication title THE 1.1A CRYSTAL STRUCTURE OF HUMAN TGF-BETA TYPE II RECEPTOR LIGAND BINDING DOMAIN
pubmed doi rcsb
source organism Homo sapiens
total genus 24
structure length 105
sequence length 105
ec nomenclature ec 2.7.11.30: Receptor protein serine/threonine kinase.
pdb deposition date 2002-07-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF08917 ecTbetaR2 Transforming growth factor beta receptor 2 ectodomain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.60.10 Mainly Beta Ribbon CD59 CD59 1m9zA00
1REWC 3U74U 1I02A 2QJBC 3NH7A 2BHIA 2ABXA 1LXHA 2L5SA 1HC9A 1KL8A 2H5FA 1HOYA 2H7ZA 2CRSA 1ES7B 1TXBA 2MJ0A 4AEAA 1TXAA 1CXOA 1FF4A 1HAJA 2HLQA 2I9BE 5EBXA 1IDGA 1NORA 1LXGA 1CXNA 3VTSA 2BTXA 1QKDA 1IDLA 1TGXA 1NXBA 4LFTA 1H0JA 4P7UA 1HC9B 1KBSA 1IDIA 1IK8A 2MUPA 3NDSA 2H7ZB 2MHYA 4HQPF 2CCXA 5DZ5A 1VB0A 1NEAA 1PLOA 1CB9A 1CDQA 1ONJA 1IJCA 1W6BA 1FSCA 5DO6A 1KC4A 1L4WA 1HAAA 4UY2C 1CDRA 2J8BA 4BDTB 4XJJA 2UWRA 1G6MA 3EVSC 1MAHF 2CRTA 2K3GA 1FFJA 3PLCA 1JE9A 3KFDE 5DU1A 1S4YA 1CREA 1CCQA 4QTIU 3HH7A 1LSIA 2CDXA 4OM5A 2H62D 3BT2U 3QB4B 1CRFA 2MJ4A 1BTEA 1F94A 4DO8A 1FRAA 1JBDA 5IMYC 1KTZB 1CVOA 1NTXA 3FEVA 1BXPA 2H62C 6EBXA 1JGKA 3NEQA 1F8UB 1YWHA 1ABTA 2LA1A 3KFDI 2JVEA 2LCRA 2QJ9C 4OM4A 1KBAA 4FAOC 2CTXA 3ERAA 1IDHA 2H64B 3LAQU 1MR6A 1M9ZA 1ERGA 2QC1A 2PJYB 1NTNA 4RUDA 2MJYA 2OFSA 1CTXA 1FASA 1NYUA 1QKEA 2N99A 4FAOE 2JQPA 1TFSA 2MFAA 2L03A 4IYEA 1RGJA 1KBTA 1COEA 1KU6B 3EBXA 1LX5B 5IMTD 3U73U 1QM7A 2ERAA 1NYSA 1ERAA 1XT3A 1KXIA 2X8BB 1IKCA 2MUOA 2FD6U 1B41B 1DRSA 2HLRA 2H64C 1LJZA 4BIKB 2UX2A 2H8UA 1CDTA 1ZADA 2PJYC 1RL5A 2GOOC 3BT1U 2QJAC 1IQ9A 1UG4A 1KS6A 4ZQYA 1CDSA 2GOOB 4EY8B 1FSSB 2VLWA 1CODA 2NBTA 1CHVS 1KFHA 1V6PA
chains in the Genus database with same CATH superfamily
1REWC 3U74U 1I02A 2QJBC 3NH7A 2BHIA 2ABXA 1LXHA 2L5SA 1HC9A 1KL8A 2H5FA 1HOYA 2H7ZA 2CRSA 1ES7B 1TXBA 2MJ0A 4AEAA 1TXAA 1CXOA 1FF4A 1HAJA 2HLQA 2I9BE 5EBXA 1IDGA 1NORA 1LXGA 1CXNA 3VTSA 2BTXA 1QKDA 1IDLA 1TGXA 1NXBA 4LFTA 1H0JA 4P7UA 1HC9B 1KBSA 1IDIA 1IK8A 2MUPA 3NDSA 2H7ZB 2MHYA 4HQPF 2CCXA 5DZ5A 1VB0A 1NEAA 1PLOA 1CB9A 1CDQA 1ONJA 1IJCA 1W6BA 1FSCA 5DO6A 1KC4A 1L4WA 1HAAA 4UY2C 1CDRA 2J8BA 4BDTB 4XJJA 2UWRA 1G6MA 3EVSC 1MAHF 2CRTA 2K3GA 1FFJA 3PLCA 1JE9A 3KFDE 5DU1A 1S4YA 1CREA 1CCQA 4QTIU 3HH7A 1LSIA 2CDXA 4OM5A 2H62D 3BT2U 3QB4B 1CRFA 2MJ4A 1BTEA 1F94A 4DO8A 1FRAA 1JBDA 5IMYC 1KTZB 1CVOA 1NTXA 3FEVA 1BXPA 2H62C 6EBXA 1JGKA 3NEQA 1F8UB 1YWHA 1ABTA 2LA1A 3KFDI 2JVEA 2LCRA 2QJ9C 4OM4A 1KBAA 4FAOC 2CTXA 3ERAA 1IDHA 2H64B 3LAQU 1MR6A 1M9ZA 1ERGA 4KSNA 2QC1A 2PJYB 1NTNA 4RUDA 2MJYA 2OFSA 1CTXA 1FASA 1NYUA 1QKEA 2N99A 4FAOE 2JQPA 1TFSA 2MFAA 2L03A 4IYEA 1RGJA 1KBTA 1COEA 1KU6B 3EBXA 1LX5B 5IMTD 3U73U 1QM7A 2ERAA 1NYSA 1ERAA 1XT3A 1KXIA 2X8BB 1IKCA 2MUOA 2FD6U 1B41B 1DRSA 2HLRA 2H64C 1LJZA 4BIKB 2UX2A 2H8UA 1CDTA 1ZADA 2PJYC 1RL5A 2GOOC 3BT1U 2QJAC 1IQ9A 1UG4A 1KS6A 4ZQYA 1CDSA 2GOOB 4EY8B 1FSSB 2VLWA 1CODA 2NBTA 1CHVS 1KFHA 1V6PA
chains in the Genus database with same CATH topology
1REWC 3U74U 1I02A 2QJBC 3NH7A 2BHIA 2ABXA 1LXHA 2L5SA 1HC9A 1KL8A 2H5FA 1HOYA 2H7ZA 2CRSA 1ES7B 1TXBA 2MJ0A 4AEAA 1TXAA 1CXOA 1FF4A 1HAJA 2HLQA 2I9BE 5EBXA 1IDGA 1NORA 1LXGA 1CXNA 3VTSA 2BTXA 1QKDA 1IDLA 1TGXA 1NXBA 4LFTA 1H0JA 4P7UA 1HC9B 1KBSA 1IDIA 1IK8A 2MUPA 3NDSA 2H7ZB 2MHYA 4HQPF 2CCXA 5DZ5A 1VB0A 1NEAA 1PLOA 1CB9A 1CDQA 1ONJA 1IJCA 1W6BA 1FSCA 5DO6A 1KC4A 1L4WA 1HAAA 4UY2C 1CDRA 2J8BA 4BDTB 4XJJA 2UWRA 1G6MA 3EVSC 1MAHF 2CRTA 2K3GA 1FFJA 3PLCA 1JE9A 3KFDE 5DU1A 1S4YA 1CREA 1CCQA 4QTIU 3HH7A 1LSIA 2CDXA 4OM5A 2H62D 3BT2U 3QB4B 1CRFA 2MJ4A 1BTEA 1F94A 4DO8A 1FRAA 1JBDA 5IMYC 1KTZB 1CVOA 1NTXA 3FEVA 1BXPA 2H62C 6EBXA 1JGKA 3NEQA 1F8UB 1YWHA 1ABTA 2LA1A 3KFDI 2JVEA 2LCRA 2QJ9C 4OM4A 1KBAA 4FAOC 2CTXA 3ERAA 1IDHA 2H64B 3LAQU 1MR6A 1M9ZA 1ERGA 4KSNA 2QC1A 2PJYB 1NTNA 4RUDA 2MJYA 2OFSA 1CTXA 1FASA 1NYUA 1QKEA 2N99A 4FAOE 2JQPA 1TFSA 2MFAA 2L03A 4IYEA 1RGJA 1KBTA 1COEA 1KU6B 3EBXA 1LX5B 5IMTD 3U73U 1QM7A 2ERAA 1NYSA 1ERAA 1XT3A 1KXIA 2X8BB 1IKCA 2MUOA 2FD6U 1B41B 1DRSA 2HLRA 2H64C 1LJZA 4BIKB 2UX2A 2H8UA 1CDTA 1ZADA 2PJYC 1RL5A 2GOOC 3BT1U 2QJAC 1IQ9A 1UG4A 1KS6A 4ZQYA 1CDSA 2GOOB 4EY8B 1FSSB 2VLWA 1CODA 2NBTA 1CHVS 1KFHA 1V6PA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1REW C;  3U74 U;  1I02 A;  2QJB C;  3NH7 A;  2BHI A;  2ABX A;  1LXH A;  2L5S A;  1HC9 A;  1KL8 A;  2H5F A;  1HOY A;  2H7Z A;  2CRS A;  1ES7 B;  1TXB A;  2MJ0 A;  4AEA A;  1TXA A;  1CXO A;  1FF4 A;  1HAJ A;  2HLQ A;  2I9B E;  5EBX A;  1IDG A;  1NOR A;  1LXG A;  1CXN A;  3VTS A;  2BTX A;  1QKD A;  1IDL A;  1TGX A;  1NXB A;  4LFT A;  1H0J A;  4P7U A;  1HC9 B;  1KBS A;  1IDI A;  1IK8 A;  2MUP A;  3NDS A;  2H7Z B;  2MHY A;  4HQP F;  2CCX A;  5DZ5 A;  1VB0 A;  1NEA A;  1PLO A;  1CB9 A;  1CDQ A;  1ONJ A;  1IJC A;  1W6B A;  1FSC A;  5DO6 A;  1KC4 A;  1L4W A;  1HAA A;  4UY2 C;  1CDR A;  2J8B A;  4BDT B;  4XJJ A;  2UWR A;  1G6M A;  3EVS C;  1MAH F;  2CRT A;  2K3G A;  1FFJ A;  3PLC A;  1JE9 A;  3KFD E;  5DU1 A;  1S4Y A;  1CRE A;  1CCQ A;  4QTI U;  3HH7 A;  1LSI A;  2CDX A;  4OM5 A;  2H62 D;  3BT2 U;  3QB4 B;  1CRF A;  2MJ4 A;  1BTE A;  1F94 A;  4DO8 A;  1FRA A;  1JBD A;  5IMY C;  1KTZ B;  1CVO A;  1NTX A;  3FEV A;  1BXP A;  2H62 C;  6EBX A;  1JGK A;  3NEQ A;  1F8U B;  1YWH A;  1ABT A;  2LA1 A;  3KFD I;  2JVE A;  2LCR A;  2QJ9 C;  4OM4 A;  1KBA A;  4FAO C;  2CTX A;  3ERA A;  1IDH A;  2H64 B;  3LAQ U;  1MR6 A;  1M9Z A;  1ERG A;  2QC1 A;  2PJY B;  1NTN A;  4RUD A;  2MJY A;  2OFS A;  1CTX A;  1FAS A;  1NYU A;  1QKE A;  2N99 A;  4FAO E;  2JQP A;  1TFS A;  2MFA A;  2L03 A;  4IYE A;  1RGJ A;  1KBT A;  1COE A;  1KU6 B;  3EBX A;  1LX5 B;  5IMT D;  3U73 U;  1QM7 A;  2ERA A;  1NYS A;  1ERA A;  1XT3 A;  1KXI A;  2X8B B;  1IKC A;  2MUO A;  2FD6 U;  1B41 B;  1DRS A;  2HLR A;  2H64 C;  1LJZ A;  4BIK B;  2UX2 A;  2H8U A;  1CDT A;  1ZAD A;  2PJY C;  1RL5 A;  2GOO C;  3BT1 U;  2QJA C;  1IQ9 A;  1UG4 A;  1KS6 A;  4ZQY A;  1CDS A;  2GOO B;  4EY8 B;  1FSS B;  2VLW A;  1COD A;  2NBT A;  1CHV S;  1KFH A;  1V6P A; 
#chains in the Genus database with same CATH topology
 1REW C;  3U74 U;  1I02 A;  2QJB C;  3NH7 A;  2BHI A;  2ABX A;  1LXH A;  2L5S A;  1HC9 A;  1KL8 A;  2H5F A;  1HOY A;  2H7Z A;  2CRS A;  1ES7 B;  1TXB A;  2MJ0 A;  4AEA A;  1TXA A;  1CXO A;  1FF4 A;  1HAJ A;  2HLQ A;  2I9B E;  5EBX A;  1IDG A;  1NOR A;  1LXG A;  1CXN A;  3VTS A;  2BTX A;  1QKD A;  1IDL A;  1TGX A;  1NXB A;  4LFT A;  1H0J A;  4P7U A;  1HC9 B;  1KBS A;  1IDI A;  1IK8 A;  2MUP A;  3NDS A;  2H7Z B;  2MHY A;  4HQP F;  2CCX A;  5DZ5 A;  1VB0 A;  1NEA A;  1PLO A;  1CB9 A;  1CDQ A;  1ONJ A;  1IJC A;  1W6B A;  1FSC A;  5DO6 A;  1KC4 A;  1L4W A;  1HAA A;  4UY2 C;  1CDR A;  2J8B A;  4BDT B;  4XJJ A;  2UWR A;  1G6M A;  3EVS C;  1MAH F;  2CRT A;  2K3G A;  1FFJ A;  3PLC A;  1JE9 A;  3KFD E;  5DU1 A;  1S4Y A;  1CRE A;  1CCQ A;  4QTI U;  3HH7 A;  1LSI A;  2CDX A;  4OM5 A;  2H62 D;  3BT2 U;  3QB4 B;  1CRF A;  2MJ4 A;  1BTE A;  1F94 A;  4DO8 A;  1FRA A;  1JBD A;  5IMY C;  1KTZ B;  1CVO A;  1NTX A;  3FEV A;  1BXP A;  2H62 C;  6EBX A;  1JGK A;  3NEQ A;  1F8U B;  1YWH A;  1ABT A;  2LA1 A;  3KFD I;  2JVE A;  2LCR A;  2QJ9 C;  4OM4 A;  1KBA A;  4FAO C;  2CTX A;  3ERA A;  1IDH A;  2H64 B;  3LAQ U;  1MR6 A;  1M9Z A;  1ERG A;  4KSN A;  2QC1 A;  2PJY B;  1NTN A;  4RUD A;  2MJY A;  2OFS A;  1CTX A;  1FAS A;  1NYU A;  1QKE A;  2N99 A;  4FAO E;  2JQP A;  1TFS A;  2MFA A;  2L03 A;  4IYE A;  1RGJ A;  1KBT A;  1COE A;  1KU6 B;  3EBX A;  1LX5 B;  5IMT D;  3U73 U;  1QM7 A;  2ERA A;  1NYS A;  1ERA A;  1XT3 A;  1KXI A;  2X8B B;  1IKC A;  2MUO A;  2FD6 U;  1B41 B;  1DRS A;  2HLR A;  2H64 C;  1LJZ A;  4BIK B;  2UX2 A;  2H8U A;  1CDT A;  1ZAD A;  2PJY C;  1RL5 A;  2GOO C;  3BT1 U;  2QJA C;  1IQ9 A;  1UG4 A;  1KS6 A;  4ZQY A;  1CDS A;  2GOO B;  4EY8 B;  1FSS B;  2VLW A;  1COD A;  2NBT A;  1CHV S;  1KFH A;  1V6P A; 
#chains in the Genus database with same CATH homology
 1REW C;  3U74 U;  1I02 A;  2QJB C;  3NH7 A;  2BHI A;  2ABX A;  1LXH A;  2L5S A;  1HC9 A;  1KL8 A;  2H5F A;  1HOY A;  2H7Z A;  2CRS A;  1ES7 B;  1TXB A;  2MJ0 A;  4AEA A;  1TXA A;  1CXO A;  1FF4 A;  1HAJ A;  2HLQ A;  2I9B E;  5EBX A;  1IDG A;  1NOR A;  1LXG A;  1CXN A;  3VTS A;  2BTX A;  1QKD A;  1IDL A;  1TGX A;  1NXB A;  4LFT A;  1H0J A;  4P7U A;  1HC9 B;  1KBS A;  1IDI A;  1IK8 A;  2MUP A;  3NDS A;  2H7Z B;  2MHY A;  4HQP F;  2CCX A;  5DZ5 A;  1VB0 A;  1NEA A;  1PLO A;  1CB9 A;  1CDQ A;  1ONJ A;  1IJC A;  1W6B A;  1FSC A;  5DO6 A;  1KC4 A;  1L4W A;  1HAA A;  4UY2 C;  1CDR A;  2J8B A;  4BDT B;  4XJJ A;  2UWR A;  1G6M A;  3EVS C;  1MAH F;  2CRT A;  2K3G A;  1FFJ A;  3PLC A;  1JE9 A;  3KFD E;  5DU1 A;  1S4Y A;  1CRE A;  1CCQ A;  4QTI U;  3HH7 A;  1LSI A;  2CDX A;  4OM5 A;  2H62 D;  3BT2 U;  3QB4 B;  1CRF A;  2MJ4 A;  1BTE A;  1F94 A;  4DO8 A;  1FRA A;  1JBD A;  5IMY C;  1KTZ B;  1CVO A;  1NTX A;  3FEV A;  1BXP A;  2H62 C;  6EBX A;  1JGK A;  3NEQ A;  1F8U B;  1YWH A;  1ABT A;  2LA1 A;  3KFD I;  2JVE A;  2LCR A;  2QJ9 C;  4OM4 A;  1KBA A;  4FAO C;  2CTX A;  3ERA A;  1IDH A;  2H64 B;  3LAQ U;  1MR6 A;  1M9Z A;  1ERG A;  4KSN A;  2QC1 A;  2PJY B;  1NTN A;  4RUD A;  2MJY A;  2OFS A;  1CTX A;  1FAS A;  1NYU A;  1QKE A;  2N99 A;  4FAO E;  2JQP A;  1TFS A;  2MFA A;  2L03 A;  4IYE A;  1RGJ A;  1KBT A;  1COE A;  1KU6 B;  3EBX A;  1LX5 B;  5IMT D;  3U73 U;  1QM7 A;  2ERA A;  1NYS A;  1ERA A;  1XT3 A;  1KXI A;  2X8B B;  1IKC A;  2MUO A;  2FD6 U;  1B41 B;  1DRS A;  2HLR A;  2H64 C;  1LJZ A;  4BIK B;  2UX2 A;  2H8U A;  1CDT A;  1ZAD A;  2PJY C;  1RL5 A;  2GOO C;  3BT1 U;  2QJA C;  1IQ9 A;  1UG4 A;  1KS6 A;  4ZQY A;  1CDS A;  2GOO B;  4EY8 B;  1FSS B;  2VLW A;  1COD A;  2NBT A;  1CHV S;  1KFH A;  1V6P A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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