2VLWA

Crystal structure of the muscarinic toxin mt7 diiodotyr51 derivative.
Total Genus 8
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
8
sequence length
65
structure length
64
Chain Sequence
LTCVKSNSIWFPTSEDCPDGQNLCFKRWQYISPRMYDFTRGCAATCPKAERDVINCCGTDKCNK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Toxin
publication title Different Interactions between Mt7 Toxin and the Human Muscarinic M1 Receptor in its Free and N-Methylscopolamine-Occupied States.
pubmed doi rcsb
molecule keywords MUSCARINIC M1-TOXIN1
total genus 8
structure length 64
sequence length 65
chains with identical sequence B
ec nomenclature
pdb deposition date 2008-01-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00087 Toxin_TOLIP Snake toxin and toxin-like protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.60.10 Mainly Beta Ribbon CD59 CD59 2vlwA00
1RGJA 1XT3A 2GOOB 1FFJA 1REWC 1CVOA 2CTXA 1I02A 2PJYB 1KS6A 2JVEA 1IDGA 3NH7A 4QTIU 3U74U 3BT2U 1W6BA 1KU6B 1CREA 2GOOC 1VB0A 2CCXA 2MJ0A 2FD6U 1RL5A 2PJYC 1F8UB 2MUOA 1FSSB 1MAHF 1CODA 5DO6A 2UWRA 5DU1A 1JBDA 1LSIA 2N99A 1ERGA 2QC1A 1LXHA 3EBXA 3NDSA 3HH7A 4OM5A 5EBXA 1KFHA 4BIKB 4P7UA 1CXNA 1CDSA 1YWHA 1HAJA 1QM7A 1FF4A 4OM4A 2QJBC 4DO8A 2LCRA 2UX2A 2H8UA 2L5SA 3ERAA 1CRFA 1TGXA 4IYEA 1CTXA 2MFAA 1LJZA 2QJAC 1L4WA 5IMYC 1BTEA 1F94A 1G6MA 1COEA 1IDLA 2H62C 6EBXA 4BDTB 2MUPA 2OFSA 2MHYA 2H7ZA 1M9ZA 1ZADA 1ERAA 2H64B 3VTSA 4LFTA 1FRAA 1KBTA 4EY8B 2X8BB 1NTNA 1LXGA 2ABXA 1S4YA 1CCQA 1HOYA 1IDHA 3LAQU 1UG4A 1LX5B 3KFDI 1QKEA 2H64C 5DZ5A 2ERAA 1ES7B 1NYUA 2K3GA 4FAOE 1ABTA 3NEQA 3FEVA 4RUDA 2H5FA 1FSCA 2QJ9C 2H7ZB 2CRTA 1TXAA 1JE9A 1MR6A 1CHVS 1NYSA 1BXPA 1HC9A 1NTXA 3KFDE 2BHIA 2VLWA 3PLCA 2J8BA 1B41B 2L03A 1H0JA 5IMTD 4XJJA 1KL8A 4HQPF 2MJ4A 2JQPA 4FAOC 1PLOA 2CDXA 1IQ9A 2MJYA 2H62D 4UY2C 1IKCA 1TFSA 3BT1U 1CXOA 1NXBA 1KBSA 1QKDA 3QB4B 1CB9A 3EVSC 1CDRA 1CDQA 1JGKA 1HC9B 1NORA 2HLRA 4ZQYA 1TXBA 1NEAA 1DRSA 2NBTA 2I9BE 2LA1A 3U73U 1HAAA 2BTXA 1KC4A 1CDTA 1KXIA 1KBAA 1IK8A 1FASA 2CRSA 1KTZB 1ONJA 4AEAA 1IDIA 1V6PA 2HLQA 1IJCA
chains in the Genus database with same CATH superfamily
1RGJA 1XT3A 2GOOB 1FFJA 1REWC 1CVOA 2CTXA 1I02A 2PJYB 1KS6A 2JVEA 1IDGA 3NH7A 4QTIU 3U74U 3BT2U 1W6BA 1KU6B 1CREA 2GOOC 1VB0A 2CCXA 2MJ0A 2FD6U 1RL5A 2PJYC 1F8UB 2MUOA 1FSSB 1MAHF 1CODA 5DO6A 2UWRA 5DU1A 1JBDA 1LSIA 2N99A 1ERGA 2QC1A 1LXHA 3EBXA 3NDSA 3HH7A 4OM5A 5EBXA 1KFHA 4BIKB 4P7UA 1CXNA 1CDSA 1YWHA 1HAJA 1QM7A 1FF4A 4OM4A 2QJBC 4DO8A 2LCRA 2UX2A 2H8UA 2L5SA 3ERAA 1CRFA 1TGXA 4IYEA 1CTXA 2MFAA 1LJZA 2QJAC 1L4WA 5IMYC 1BTEA 1F94A 1G6MA 1COEA 1IDLA 2H62C 6EBXA 4BDTB 2MUPA 2OFSA 2MHYA 2H7ZA 1M9ZA 1ZADA 1ERAA 2H64B 3VTSA 4LFTA 1FRAA 1KBTA 4EY8B 2X8BB 1NTNA 1LXGA 2ABXA 1S4YA 1CCQA 1HOYA 1IDHA 3LAQU 1UG4A 1LX5B 3KFDI 1QKEA 2H64C 5DZ5A 2ERAA 1ES7B 1NYUA 2K3GA 4FAOE 1ABTA 3NEQA 3FEVA 4RUDA 2H5FA 1FSCA 2QJ9C 2H7ZB 2CRTA 1TXAA 1JE9A 1MR6A 1CHVS 1NYSA 1BXPA 1HC9A 1NTXA 3KFDE 2BHIA 2VLWA 3PLCA 2J8BA 1B41B 2L03A 1H0JA 5IMTD 4XJJA 1KL8A 4HQPF 2MJ4A 2JQPA 4FAOC 1PLOA 2CDXA 1IQ9A 2MJYA 2H62D 4UY2C 1IKCA 1TFSA 3BT1U 1CXOA 1NXBA 1KBSA 1QKDA 3QB4B 1CB9A 3EVSC 1CDRA 1CDQA 1JGKA 1HC9B 1NORA 2HLRA 4ZQYA 1TXBA 1NEAA 1DRSA 2NBTA 2I9BE 2LA1A 3U73U 1HAAA 2BTXA 4KSNA 1KC4A 1CDTA 1KXIA 1KBAA 1IK8A 1FASA 2CRSA 1KTZB 1ONJA 4AEAA 1IDIA 1V6PA 2HLQA 1IJCA
chains in the Genus database with same CATH topology
1RGJA 1XT3A 2GOOB 1FFJA 1REWC 1CVOA 2CTXA 1I02A 2PJYB 1KS6A 2JVEA 1IDGA 3NH7A 4QTIU 3U74U 3BT2U 1W6BA 1KU6B 1CREA 2GOOC 1VB0A 2CCXA 2MJ0A 2FD6U 1RL5A 2PJYC 1F8UB 2MUOA 1FSSB 1MAHF 1CODA 5DO6A 2UWRA 5DU1A 1JBDA 1LSIA 2N99A 1ERGA 2QC1A 1LXHA 3EBXA 3NDSA 3HH7A 4OM5A 5EBXA 1KFHA 4BIKB 4P7UA 1CXNA 1CDSA 1YWHA 1HAJA 1QM7A 1FF4A 4OM4A 2QJBC 4DO8A 2LCRA 2UX2A 2H8UA 2L5SA 3ERAA 1CRFA 1TGXA 4IYEA 1CTXA 2MFAA 1LJZA 2QJAC 1L4WA 5IMYC 1BTEA 1F94A 1G6MA 1COEA 1IDLA 2H62C 6EBXA 4BDTB 2MUPA 2OFSA 2MHYA 2H7ZA 1M9ZA 1ZADA 1ERAA 2H64B 3VTSA 4LFTA 1FRAA 1KBTA 4EY8B 2X8BB 1NTNA 1LXGA 2ABXA 1S4YA 1CCQA 1HOYA 1IDHA 3LAQU 1UG4A 1LX5B 3KFDI 1QKEA 2H64C 5DZ5A 2ERAA 1ES7B 1NYUA 2K3GA 4FAOE 1ABTA 3NEQA 3FEVA 4RUDA 2H5FA 1FSCA 2QJ9C 2H7ZB 2CRTA 1TXAA 1JE9A 1MR6A 1CHVS 1NYSA 1BXPA 1HC9A 1NTXA 3KFDE 2BHIA 2VLWA 3PLCA 2J8BA 1B41B 2L03A 1H0JA 5IMTD 4XJJA 1KL8A 4HQPF 2MJ4A 2JQPA 4FAOC 1PLOA 2CDXA 1IQ9A 2MJYA 2H62D 4UY2C 1IKCA 1TFSA 3BT1U 1CXOA 1NXBA 1KBSA 1QKDA 3QB4B 1CB9A 3EVSC 1CDRA 1CDQA 1JGKA 1HC9B 1NORA 2HLRA 4ZQYA 1TXBA 1NEAA 1DRSA 2NBTA 2I9BE 2LA1A 3U73U 1HAAA 2BTXA 4KSNA 1KC4A 1CDTA 1KXIA 1KBAA 1IK8A 1FASA 2CRSA 1KTZB 1ONJA 4AEAA 1IDIA 1V6PA 2HLQA 1IJCA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1RGJ A;  1XT3 A;  2GOO B;  1FFJ A;  1REW C;  1CVO A;  2CTX A;  1I02 A;  2PJY B;  1KS6 A;  2JVE A;  1IDG A;  3NH7 A;  4QTI U;  3U74 U;  3BT2 U;  1W6B A;  1KU6 B;  1CRE A;  2GOO C;  1VB0 A;  2CCX A;  2MJ0 A;  2FD6 U;  1RL5 A;  2PJY C;  1F8U B;  2MUO A;  1FSS B;  1MAH F;  1COD A;  5DO6 A;  2UWR A;  5DU1 A;  1JBD A;  1LSI A;  2N99 A;  1ERG A;  2QC1 A;  1LXH A;  3EBX A;  3NDS A;  3HH7 A;  4OM5 A;  5EBX A;  1KFH A;  4BIK B;  4P7U A;  1CXN A;  1CDS A;  1YWH A;  1HAJ A;  1QM7 A;  1FF4 A;  4OM4 A;  2QJB C;  4DO8 A;  2LCR A;  2UX2 A;  2H8U A;  2L5S A;  3ERA A;  1CRF A;  1TGX A;  4IYE A;  1CTX A;  2MFA A;  1LJZ A;  2QJA C;  1L4W A;  5IMY C;  1BTE A;  1F94 A;  1G6M A;  1COE A;  1IDL A;  2H62 C;  6EBX A;  4BDT B;  2MUP A;  2OFS A;  2MHY A;  2H7Z A;  1M9Z A;  1ZAD A;  1ERA A;  2H64 B;  3VTS A;  4LFT A;  1FRA A;  1KBT A;  4EY8 B;  2X8B B;  1NTN A;  1LXG A;  2ABX A;  1S4Y A;  1CCQ A;  1HOY A;  1IDH A;  3LAQ U;  1UG4 A;  1LX5 B;  3KFD I;  1QKE A;  2H64 C;  5DZ5 A;  2ERA A;  1ES7 B;  1NYU A;  2K3G A;  4FAO E;  1ABT A;  3NEQ A;  3FEV A;  4RUD A;  2H5F A;  1FSC A;  2QJ9 C;  2H7Z B;  2CRT A;  1TXA A;  1JE9 A;  1MR6 A;  1CHV S;  1NYS A;  1BXP A;  1HC9 A;  1NTX A;  3KFD E;  2BHI A;  2VLW A;  3PLC A;  2J8B A;  1B41 B;  2L03 A;  1H0J A;  5IMT D;  4XJJ A;  1KL8 A;  4HQP F;  2MJ4 A;  2JQP A;  4FAO C;  1PLO A;  2CDX A;  1IQ9 A;  2MJY A;  2H62 D;  4UY2 C;  1IKC A;  1TFS A;  3BT1 U;  1CXO A;  1NXB A;  1KBS A;  1QKD A;  3QB4 B;  1CB9 A;  3EVS C;  1CDR A;  1CDQ A;  1JGK A;  1HC9 B;  1NOR A;  2HLR A;  4ZQY A;  1TXB A;  1NEA A;  1DRS A;  2NBT A;  2I9B E;  2LA1 A;  3U73 U;  1HAA A;  2BTX A;  1KC4 A;  1CDT A;  1KXI A;  1KBA A;  1IK8 A;  1FAS A;  2CRS A;  1KTZ B;  1ONJ A;  4AEA A;  1IDI A;  1V6P A;  2HLQ A;  1IJC A; 
#chains in the Genus database with same CATH topology
 1RGJ A;  1XT3 A;  2GOO B;  1FFJ A;  1REW C;  1CVO A;  2CTX A;  1I02 A;  2PJY B;  1KS6 A;  2JVE A;  1IDG A;  3NH7 A;  4QTI U;  3U74 U;  3BT2 U;  1W6B A;  1KU6 B;  1CRE A;  2GOO C;  1VB0 A;  2CCX A;  2MJ0 A;  2FD6 U;  1RL5 A;  2PJY C;  1F8U B;  2MUO A;  1FSS B;  1MAH F;  1COD A;  5DO6 A;  2UWR A;  5DU1 A;  1JBD A;  1LSI A;  2N99 A;  1ERG A;  2QC1 A;  1LXH A;  3EBX A;  3NDS A;  3HH7 A;  4OM5 A;  5EBX A;  1KFH A;  4BIK B;  4P7U A;  1CXN A;  1CDS A;  1YWH A;  1HAJ A;  1QM7 A;  1FF4 A;  4OM4 A;  2QJB C;  4DO8 A;  2LCR A;  2UX2 A;  2H8U A;  2L5S A;  3ERA A;  1CRF A;  1TGX A;  4IYE A;  1CTX A;  2MFA A;  1LJZ A;  2QJA C;  1L4W A;  5IMY C;  1BTE A;  1F94 A;  1G6M A;  1COE A;  1IDL A;  2H62 C;  6EBX A;  4BDT B;  2MUP A;  2OFS A;  2MHY A;  2H7Z A;  1M9Z A;  1ZAD A;  1ERA A;  2H64 B;  3VTS A;  4LFT A;  1FRA A;  1KBT A;  4EY8 B;  2X8B B;  1NTN A;  1LXG A;  2ABX A;  1S4Y A;  1CCQ A;  1HOY A;  1IDH A;  3LAQ U;  1UG4 A;  1LX5 B;  3KFD I;  1QKE A;  2H64 C;  5DZ5 A;  2ERA A;  1ES7 B;  1NYU A;  2K3G A;  4FAO E;  1ABT A;  3NEQ A;  3FEV A;  4RUD A;  2H5F A;  1FSC A;  2QJ9 C;  2H7Z B;  2CRT A;  1TXA A;  1JE9 A;  1MR6 A;  1CHV S;  1NYS A;  1BXP A;  1HC9 A;  1NTX A;  3KFD E;  2BHI A;  2VLW A;  3PLC A;  2J8B A;  1B41 B;  2L03 A;  1H0J A;  5IMT D;  4XJJ A;  1KL8 A;  4HQP F;  2MJ4 A;  2JQP A;  4FAO C;  1PLO A;  2CDX A;  1IQ9 A;  2MJY A;  2H62 D;  4UY2 C;  1IKC A;  1TFS A;  3BT1 U;  1CXO A;  1NXB A;  1KBS A;  1QKD A;  3QB4 B;  1CB9 A;  3EVS C;  1CDR A;  1CDQ A;  1JGK A;  1HC9 B;  1NOR A;  2HLR A;  4ZQY A;  1TXB A;  1NEA A;  1DRS A;  2NBT A;  2I9B E;  2LA1 A;  3U73 U;  1HAA A;  2BTX A;  4KSN A;  1KC4 A;  1CDT A;  1KXI A;  1KBA A;  1IK8 A;  1FAS A;  2CRS A;  1KTZ B;  1ONJ A;  4AEA A;  1IDI A;  1V6P A;  2HLQ A;  1IJC A; 
#chains in the Genus database with same CATH homology
 1RGJ A;  1XT3 A;  2GOO B;  1FFJ A;  1REW C;  1CVO A;  2CTX A;  1I02 A;  2PJY B;  1KS6 A;  2JVE A;  1IDG A;  3NH7 A;  4QTI U;  3U74 U;  3BT2 U;  1W6B A;  1KU6 B;  1CRE A;  2GOO C;  1VB0 A;  2CCX A;  2MJ0 A;  2FD6 U;  1RL5 A;  2PJY C;  1F8U B;  2MUO A;  1FSS B;  1MAH F;  1COD A;  5DO6 A;  2UWR A;  5DU1 A;  1JBD A;  1LSI A;  2N99 A;  1ERG A;  2QC1 A;  1LXH A;  3EBX A;  3NDS A;  3HH7 A;  4OM5 A;  5EBX A;  1KFH A;  4BIK B;  4P7U A;  1CXN A;  1CDS A;  1YWH A;  1HAJ A;  1QM7 A;  1FF4 A;  4OM4 A;  2QJB C;  4DO8 A;  2LCR A;  2UX2 A;  2H8U A;  2L5S A;  3ERA A;  1CRF A;  1TGX A;  4IYE A;  1CTX A;  2MFA A;  1LJZ A;  2QJA C;  1L4W A;  5IMY C;  1BTE A;  1F94 A;  1G6M A;  1COE A;  1IDL A;  2H62 C;  6EBX A;  4BDT B;  2MUP A;  2OFS A;  2MHY A;  2H7Z A;  1M9Z A;  1ZAD A;  1ERA A;  2H64 B;  3VTS A;  4LFT A;  1FRA A;  1KBT A;  4EY8 B;  2X8B B;  1NTN A;  1LXG A;  2ABX A;  1S4Y A;  1CCQ A;  1HOY A;  1IDH A;  3LAQ U;  1UG4 A;  1LX5 B;  3KFD I;  1QKE A;  2H64 C;  5DZ5 A;  2ERA A;  1ES7 B;  1NYU A;  2K3G A;  4FAO E;  1ABT A;  3NEQ A;  3FEV A;  4RUD A;  2H5F A;  1FSC A;  2QJ9 C;  2H7Z B;  2CRT A;  1TXA A;  1JE9 A;  1MR6 A;  1CHV S;  1NYS A;  1BXP A;  1HC9 A;  1NTX A;  3KFD E;  2BHI A;  2VLW A;  3PLC A;  2J8B A;  1B41 B;  2L03 A;  1H0J A;  5IMT D;  4XJJ A;  1KL8 A;  4HQP F;  2MJ4 A;  2JQP A;  4FAO C;  1PLO A;  2CDX A;  1IQ9 A;  2MJY A;  2H62 D;  4UY2 C;  1IKC A;  1TFS A;  3BT1 U;  1CXO A;  1NXB A;  1KBS A;  1QKD A;  3QB4 B;  1CB9 A;  3EVS C;  1CDR A;  1CDQ A;  1JGK A;  1HC9 B;  1NOR A;  2HLR A;  4ZQY A;  1TXB A;  1NEA A;  1DRS A;  2NBT A;  2I9B E;  2LA1 A;  3U73 U;  1HAA A;  2BTX A;  4KSN A;  1KC4 A;  1CDT A;  1KXI A;  1KBA A;  1IK8 A;  1FAS A;  2CRS A;  1KTZ B;  1ONJ A;  4AEA A;  1IDI A;  1V6P A;  2HLQ A;  1IJC A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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