1V6PA

Crystal structure of cobrotoxin
Total Genus 12
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
12
sequence length
62
structure length
62
Chain Sequence
LECHNQQSSQTPTTTGCSGGETNCYKKRWRDHRGYRTERGCGCPSVKNGIEINCCTTDRCNN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title The atomic resolution crystal structure of atratoxin determined by single wavelength anomalous diffraction phasing
pubmed doi rcsb
molecule tags Toxin
molecule keywords Cobrotoxin
total genus 12
structure length 62
sequence length 62
chains with identical sequence B
ec nomenclature
pdb deposition date 2003-12-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00087 Toxin_TOLIP Snake toxin and toxin-like protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.60.10 Mainly Beta Ribbon CD59 CD59 1v6pA00
2LCRA 3NH7A 1V6PA 1NXBA 4RUDA 4AEAA 2OFSA 2JVEA 1HC9A 1IDIA 1CVOA 2CCXA 1CHVS 1NYUA 1CXOA 1RL5A 1MR6A 1NTXA 1NORA 2HLQA 4LFTA 1RGJA 1BTEA 6EBXA 1IJCA 4BIKB 4OM5A 2ERAA 2UWRA 2N99A 1ERAA 4UY2C 4ZQYA 1FFJA 1CODA 1IDGA 1FRAA 1KBTA 2H7ZB 2BHIA 2CRSA 1QKDA 1MAHF 2I9BE 3HH7A 3FEVA 1COEA 1JGKA 1W6BA 1IQ9A 1CB9A 2H62C 2H64B 1REWC 1PLOA 2PJYC 2ABXA 1LX5B 5DU1A 1KFHA 1KBAA 2H8UA 2NBTA 3QB4B 1L4WA 1S4YA 2K3GA 1HOYA 5DO6A 5DZ5A 1TXAA 1JE9A 1KC4A 1FSCA 1KXIA 2L03A 2H7ZA 1ES7B 2QJAC 1G6MA 2GOOB 2X8BB 1CXNA 1QM7A 2MJ4A 2QJBC 1KL8A 1BXPA 2LA1A 3EBXA 1LSIA 4EY8B 2H64C 2QC1A 3NDSA 4DO8A 2CRTA 1LXGA 1ERGA 2MUPA 2MJ0A 3BT2U 2L5SA 1CDTA 1VB0A 4P7UA 3ERAA 1KS6A 1HC9B 1CRFA 1LJZA 1IK8A 3EVSC 4FAOC 5IMTD 1LXHA 1DRSA 3LAQU 2MFAA 3U74U 1HAAA 1TGXA 1TFSA 1FASA 2CTXA 1XT3A 2H5FA 2GOOC 1KTZB 1NEAA 3BT1U 5EBXA 2QJ9C 4FAOE 2MUOA 1ABTA 1CDSA 1CDRA 1FF4A 1FSSB 1F8UB 2J8BA 3VTSA 1CTXA 1ZADA 1H0JA 3NEQA 2VLWA 3U73U 2JQPA 1I02A 5IMYC 1KBSA 1NTNA 1CCQA 1KU6B 1M9ZA 2HLRA 1CREA 4QTIU 4IYEA 3PLCA 1HAJA 3KFDE 4OM4A 1JBDA 2FD6U 2H62D 2MJYA 3KFDI 4XJJA 1CDQA 2MHYA 2BTXA 1B41B 1QKEA 1YWHA 4HQPF 2CDXA 1IDHA 1NYSA 2UX2A 4BDTB 1IDLA 1TXBA 1ONJA 2PJYB 1IKCA 1F94A 1UG4A
chains in the Genus database with same CATH superfamily
2LCRA 3NH7A 1V6PA 1NXBA 4RUDA 4AEAA 2OFSA 2JVEA 1HC9A 1IDIA 1CVOA 2CCXA 1CHVS 1NYUA 1CXOA 1RL5A 1MR6A 1NTXA 1NORA 2HLQA 4LFTA 1RGJA 1BTEA 6EBXA 1IJCA 4BIKB 4OM5A 2ERAA 2UWRA 2N99A 1ERAA 4UY2C 4ZQYA 1FFJA 1CODA 1IDGA 1FRAA 1KBTA 2H7ZB 2BHIA 2CRSA 1QKDA 1MAHF 2I9BE 3HH7A 3FEVA 1COEA 1JGKA 1W6BA 1IQ9A 1CB9A 2H62C 2H64B 1REWC 1PLOA 2PJYC 2ABXA 1LX5B 5DU1A 1KFHA 1KBAA 2H8UA 2NBTA 3QB4B 1L4WA 1S4YA 2K3GA 1HOYA 5DO6A 5DZ5A 1TXAA 1JE9A 1KC4A 1FSCA 1KXIA 2L03A 2H7ZA 1ES7B 2QJAC 1G6MA 2GOOB 2X8BB 1CXNA 1QM7A 2MJ4A 2QJBC 1KL8A 1BXPA 2LA1A 3EBXA 1LSIA 4EY8B 2H64C 2QC1A 3NDSA 4DO8A 2CRTA 1LXGA 1ERGA 2MUPA 2MJ0A 3BT2U 2L5SA 1CDTA 1VB0A 4P7UA 3ERAA 1KS6A 1HC9B 1CRFA 1LJZA 1IK8A 3EVSC 4FAOC 5IMTD 1LXHA 1DRSA 3LAQU 2MFAA 3U74U 1HAAA 1TGXA 1TFSA 1FASA 2CTXA 1XT3A 2H5FA 2GOOC 1KTZB 1NEAA 3BT1U 5EBXA 2QJ9C 4FAOE 2MUOA 1ABTA 1CDSA 1CDRA 1FF4A 1FSSB 1F8UB 2J8BA 3VTSA 1CTXA 1ZADA 1H0JA 3NEQA 2VLWA 3U73U 2JQPA 1I02A 5IMYC 1KBSA 1NTNA 1CCQA 1KU6B 1M9ZA 2HLRA 1CREA 4QTIU 4IYEA 3PLCA 1HAJA 3KFDE 4OM4A 1JBDA 2FD6U 2H62D 2MJYA 3KFDI 4XJJA 1CDQA 2MHYA 2BTXA 1B41B 1QKEA 1YWHA 4HQPF 2CDXA 1IDHA 1NYSA 2UX2A 4BDTB 1IDLA 1TXBA 1ONJA 2PJYB 1IKCA 1F94A 1UG4A 4KSNA
chains in the Genus database with same CATH topology
2LCRA 3NH7A 1V6PA 1NXBA 4RUDA 4AEAA 2OFSA 2JVEA 1HC9A 1IDIA 1CVOA 2CCXA 1CHVS 1NYUA 1CXOA 1RL5A 1MR6A 1NTXA 1NORA 2HLQA 4LFTA 1RGJA 1BTEA 6EBXA 1IJCA 4BIKB 4OM5A 2ERAA 2UWRA 2N99A 1ERAA 4UY2C 4ZQYA 1FFJA 1CODA 1IDGA 1FRAA 1KBTA 2H7ZB 2BHIA 2CRSA 1QKDA 1MAHF 2I9BE 3HH7A 3FEVA 1COEA 1JGKA 1W6BA 1IQ9A 1CB9A 2H62C 2H64B 1REWC 1PLOA 2PJYC 2ABXA 1LX5B 5DU1A 1KFHA 1KBAA 2H8UA 2NBTA 3QB4B 1L4WA 1S4YA 2K3GA 1HOYA 5DO6A 5DZ5A 1TXAA 1JE9A 1KC4A 1FSCA 1KXIA 2L03A 2H7ZA 1ES7B 2QJAC 1G6MA 2GOOB 2X8BB 1CXNA 1QM7A 2MJ4A 2QJBC 1KL8A 1BXPA 2LA1A 3EBXA 1LSIA 4EY8B 2H64C 2QC1A 3NDSA 4DO8A 2CRTA 1LXGA 1ERGA 2MUPA 2MJ0A 3BT2U 2L5SA 1CDTA 1VB0A 4P7UA 3ERAA 1KS6A 1HC9B 1CRFA 1LJZA 1IK8A 3EVSC 4FAOC 5IMTD 1LXHA 1DRSA 3LAQU 2MFAA 3U74U 1HAAA 1TGXA 1TFSA 1FASA 2CTXA 1XT3A 2H5FA 2GOOC 1KTZB 1NEAA 3BT1U 5EBXA 2QJ9C 4FAOE 2MUOA 1ABTA 1CDSA 1CDRA 1FF4A 1FSSB 1F8UB 2J8BA 3VTSA 1CTXA 1ZADA 1H0JA 3NEQA 2VLWA 3U73U 2JQPA 1I02A 5IMYC 1KBSA 1NTNA 1CCQA 1KU6B 1M9ZA 2HLRA 1CREA 4QTIU 4IYEA 3PLCA 1HAJA 3KFDE 4OM4A 1JBDA 2FD6U 2H62D 2MJYA 3KFDI 4XJJA 1CDQA 2MHYA 2BTXA 1B41B 1QKEA 1YWHA 4HQPF 2CDXA 1IDHA 1NYSA 2UX2A 4BDTB 1IDLA 1TXBA 1ONJA 2PJYB 1IKCA 1F94A 1UG4A 4KSNA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2LCR A;  3NH7 A;  1V6P A;  1NXB A;  4RUD A;  4AEA A;  2OFS A;  2JVE A;  1HC9 A;  1IDI A;  1CVO A;  2CCX A;  1CHV S;  1NYU A;  1CXO A;  1RL5 A;  1MR6 A;  1NTX A;  1NOR A;  2HLQ A;  4LFT A;  1RGJ A;  1BTE A;  6EBX A;  1IJC A;  4BIK B;  4OM5 A;  2ERA A;  2UWR A;  2N99 A;  1ERA A;  4UY2 C;  4ZQY A;  1FFJ A;  1COD A;  1IDG A;  1FRA A;  1KBT A;  2H7Z B;  2BHI A;  2CRS A;  1QKD A;  1MAH F;  2I9B E;  3HH7 A;  3FEV A;  1COE A;  1JGK A;  1W6B A;  1IQ9 A;  1CB9 A;  2H62 C;  2H64 B;  1REW C;  1PLO A;  2PJY C;  2ABX A;  1LX5 B;  5DU1 A;  1KFH A;  1KBA A;  2H8U A;  2NBT A;  3QB4 B;  1L4W A;  1S4Y A;  2K3G A;  1HOY A;  5DO6 A;  5DZ5 A;  1TXA A;  1JE9 A;  1KC4 A;  1FSC A;  1KXI A;  2L03 A;  2H7Z A;  1ES7 B;  2QJA C;  1G6M A;  2GOO B;  2X8B B;  1CXN A;  1QM7 A;  2MJ4 A;  2QJB C;  1KL8 A;  1BXP A;  2LA1 A;  3EBX A;  1LSI A;  4EY8 B;  2H64 C;  2QC1 A;  3NDS A;  4DO8 A;  2CRT A;  1LXG A;  1ERG A;  2MUP A;  2MJ0 A;  3BT2 U;  2L5S A;  1CDT A;  1VB0 A;  4P7U A;  3ERA A;  1KS6 A;  1HC9 B;  1CRF A;  1LJZ A;  1IK8 A;  3EVS C;  4FAO C;  5IMT D;  1LXH A;  1DRS A;  3LAQ U;  2MFA A;  3U74 U;  1HAA A;  1TGX A;  1TFS A;  1FAS A;  2CTX A;  1XT3 A;  2H5F A;  2GOO C;  1KTZ B;  1NEA A;  3BT1 U;  5EBX A;  2QJ9 C;  4FAO E;  2MUO A;  1ABT A;  1CDS A;  1CDR A;  1FF4 A;  1FSS B;  1F8U B;  2J8B A;  3VTS A;  1CTX A;  1ZAD A;  1H0J A;  3NEQ A;  2VLW A;  3U73 U;  2JQP A;  1I02 A;  5IMY C;  1KBS A;  1NTN A;  1CCQ A;  1KU6 B;  1M9Z A;  2HLR A;  1CRE A;  4QTI U;  4IYE A;  3PLC A;  1HAJ A;  3KFD E;  4OM4 A;  1JBD A;  2FD6 U;  2H62 D;  2MJY A;  3KFD I;  4XJJ A;  1CDQ A;  2MHY A;  2BTX A;  1B41 B;  1QKE A;  1YWH A;  4HQP F;  2CDX A;  1IDH A;  1NYS A;  2UX2 A;  4BDT B;  1IDL A;  1TXB A;  1ONJ A;  2PJY B;  1IKC A;  1F94 A;  1UG4 A; 
#chains in the Genus database with same CATH topology
 2LCR A;  3NH7 A;  1V6P A;  1NXB A;  4RUD A;  4AEA A;  2OFS A;  2JVE A;  1HC9 A;  1IDI A;  1CVO A;  2CCX A;  1CHV S;  1NYU A;  1CXO A;  1RL5 A;  1MR6 A;  1NTX A;  1NOR A;  2HLQ A;  4LFT A;  1RGJ A;  1BTE A;  6EBX A;  1IJC A;  4BIK B;  4OM5 A;  2ERA A;  2UWR A;  2N99 A;  1ERA A;  4UY2 C;  4ZQY A;  1FFJ A;  1COD A;  1IDG A;  1FRA A;  1KBT A;  2H7Z B;  2BHI A;  2CRS A;  1QKD A;  1MAH F;  2I9B E;  3HH7 A;  3FEV A;  1COE A;  1JGK A;  1W6B A;  1IQ9 A;  1CB9 A;  2H62 C;  2H64 B;  1REW C;  1PLO A;  2PJY C;  2ABX A;  1LX5 B;  5DU1 A;  1KFH A;  1KBA A;  2H8U A;  2NBT A;  3QB4 B;  1L4W A;  1S4Y A;  2K3G A;  1HOY A;  5DO6 A;  5DZ5 A;  1TXA A;  1JE9 A;  1KC4 A;  1FSC A;  1KXI A;  2L03 A;  2H7Z A;  1ES7 B;  2QJA C;  1G6M A;  2GOO B;  2X8B B;  1CXN A;  1QM7 A;  2MJ4 A;  2QJB C;  1KL8 A;  1BXP A;  2LA1 A;  3EBX A;  1LSI A;  4EY8 B;  2H64 C;  2QC1 A;  3NDS A;  4DO8 A;  2CRT A;  1LXG A;  1ERG A;  2MUP A;  2MJ0 A;  3BT2 U;  2L5S A;  1CDT A;  1VB0 A;  4P7U A;  3ERA A;  1KS6 A;  1HC9 B;  1CRF A;  1LJZ A;  1IK8 A;  3EVS C;  4FAO C;  5IMT D;  1LXH A;  1DRS A;  3LAQ U;  2MFA A;  3U74 U;  1HAA A;  1TGX A;  1TFS A;  1FAS A;  2CTX A;  1XT3 A;  2H5F A;  2GOO C;  1KTZ B;  1NEA A;  3BT1 U;  5EBX A;  2QJ9 C;  4FAO E;  2MUO A;  1ABT A;  1CDS A;  1CDR A;  1FF4 A;  1FSS B;  1F8U B;  2J8B A;  3VTS A;  1CTX A;  1ZAD A;  1H0J A;  3NEQ A;  2VLW A;  3U73 U;  2JQP A;  1I02 A;  5IMY C;  1KBS A;  1NTN A;  1CCQ A;  1KU6 B;  1M9Z A;  2HLR A;  1CRE A;  4QTI U;  4IYE A;  3PLC A;  1HAJ A;  3KFD E;  4OM4 A;  1JBD A;  2FD6 U;  2H62 D;  2MJY A;  3KFD I;  4XJJ A;  1CDQ A;  2MHY A;  2BTX A;  1B41 B;  1QKE A;  1YWH A;  4HQP F;  2CDX A;  1IDH A;  1NYS A;  2UX2 A;  4BDT B;  1IDL A;  1TXB A;  1ONJ A;  2PJY B;  1IKC A;  1F94 A;  1UG4 A;  4KSN A; 
#chains in the Genus database with same CATH homology
 2LCR A;  3NH7 A;  1V6P A;  1NXB A;  4RUD A;  4AEA A;  2OFS A;  2JVE A;  1HC9 A;  1IDI A;  1CVO A;  2CCX A;  1CHV S;  1NYU A;  1CXO A;  1RL5 A;  1MR6 A;  1NTX A;  1NOR A;  2HLQ A;  4LFT A;  1RGJ A;  1BTE A;  6EBX A;  1IJC A;  4BIK B;  4OM5 A;  2ERA A;  2UWR A;  2N99 A;  1ERA A;  4UY2 C;  4ZQY A;  1FFJ A;  1COD A;  1IDG A;  1FRA A;  1KBT A;  2H7Z B;  2BHI A;  2CRS A;  1QKD A;  1MAH F;  2I9B E;  3HH7 A;  3FEV A;  1COE A;  1JGK A;  1W6B A;  1IQ9 A;  1CB9 A;  2H62 C;  2H64 B;  1REW C;  1PLO A;  2PJY C;  2ABX A;  1LX5 B;  5DU1 A;  1KFH A;  1KBA A;  2H8U A;  2NBT A;  3QB4 B;  1L4W A;  1S4Y A;  2K3G A;  1HOY A;  5DO6 A;  5DZ5 A;  1TXA A;  1JE9 A;  1KC4 A;  1FSC A;  1KXI A;  2L03 A;  2H7Z A;  1ES7 B;  2QJA C;  1G6M A;  2GOO B;  2X8B B;  1CXN A;  1QM7 A;  2MJ4 A;  2QJB C;  1KL8 A;  1BXP A;  2LA1 A;  3EBX A;  1LSI A;  4EY8 B;  2H64 C;  2QC1 A;  3NDS A;  4DO8 A;  2CRT A;  1LXG A;  1ERG A;  2MUP A;  2MJ0 A;  3BT2 U;  2L5S A;  1CDT A;  1VB0 A;  4P7U A;  3ERA A;  1KS6 A;  1HC9 B;  1CRF A;  1LJZ A;  1IK8 A;  3EVS C;  4FAO C;  5IMT D;  1LXH A;  1DRS A;  3LAQ U;  2MFA A;  3U74 U;  1HAA A;  1TGX A;  1TFS A;  1FAS A;  2CTX A;  1XT3 A;  2H5F A;  2GOO C;  1KTZ B;  1NEA A;  3BT1 U;  5EBX A;  2QJ9 C;  4FAO E;  2MUO A;  1ABT A;  1CDS A;  1CDR A;  1FF4 A;  1FSS B;  1F8U B;  2J8B A;  3VTS A;  1CTX A;  1ZAD A;  1H0J A;  3NEQ A;  2VLW A;  3U73 U;  2JQP A;  1I02 A;  5IMY C;  1KBS A;  1NTN A;  1CCQ A;  1KU6 B;  1M9Z A;  2HLR A;  1CRE A;  4QTI U;  4IYE A;  3PLC A;  1HAJ A;  3KFD E;  4OM4 A;  1JBD A;  2FD6 U;  2H62 D;  2MJY A;  3KFD I;  4XJJ A;  1CDQ A;  2MHY A;  2BTX A;  1B41 B;  1QKE A;  1YWH A;  4HQP F;  2CDX A;  1IDH A;  1NYS A;  2UX2 A;  4BDT B;  1IDL A;  1TXB A;  1ONJ A;  2PJY B;  1IKC A;  1F94 A;  1UG4 A;  4KSN A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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