2I9BE

Crystal structure of atf-urokinase receptor complex
Total Genus 51
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
51
sequence length
278
structure length
265
Chain Sequence
SLRCMQCKTNGDCRVEECALGQDLCRTTIVRLWEEGEELELVEKSCTHSEKTNRTLSYRTGLKITSLTEVVCGLDLCNQGNSGRAVTYSRSRYLECISCGSSDMSCHQSLQCRSPEEQCLDVVTHWIQRPKDDRHLRGCGYLPGCPGSNGFHNQDTFHFLKCCQTTKCNEGPILELENLPQNGRQCYSCKGQSTHGCSSEETFLIDCRGPMNQCLVATGTHEPKQQSYMVRGCATASAHLGDAFSMNHIDVSCCTKSGCNHPDLD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Urokinase-type plasminogen activator
publication title Structural basis of interaction between urokinase-type plasminogen activator and its receptor.
pubmed doi rcsb
source organism Homo sapiens
total genus 51
structure length 265
sequence length 278
chains with identical sequence F, G, H
ec nomenclature
pdb deposition date 2006-09-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
E PF00021 UPAR_LY6 u-PAR/Ly-6 domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.60.10 Mainly Beta Ribbon CD59 CD59 2i9bE01
2.10.60.10 Mainly Beta Ribbon CD59 CD59 2i9bE03
2.10.60.10 Mainly Beta Ribbon CD59 CD59 2i9bE02
1LSIA 1RL5A 1KXIA 4QTIU 1KU6B 1FASA 2QJBC 2H5FA 2H7ZA 1BXPA 2ABXA 1HAJA 3BT2U 1VB0A 1QM7A 2ERAA 2H62C 1CXNA 1FSCA 1IQ9A 1MAHF 1IDHA 2LA1A 1FF4A 1W6BA 1ZADA 2MUPA 1KL8A 2MJ4A 5DO6A 1FRAA 4LFTA 2HLQA 2QJAC 2X8BB 1HC9A 1REWC 2CCXA 4ZQYA 1S4YA 3QB4B 2JQPA 1KBTA 1CDTA 2LCRA 4BIKB 4DO8A 2NBTA 3NDSA 2MFAA 1LJZA 1NORA 1IDIA 1CXOA 4OM4A 1V6PA 1ERGA 3NH7A 1CDQA 3U73U 1ES7B 1KBSA 2H64B 3ERAA 1IDLA 2HLRA 2GOOC 2K3GA 3NEQA 4OM5A 4UY2C 2MUOA 2UWRA 1BTEA 2H8UA 1M9ZA 3BT1U 4XJJA 6EBXA 1LXGA 3KFDE 1IKCA 5DZ5A 1KS6A 1CRFA 1KFHA 1L4WA 3U74U 2J8BA 1CDRA 2PJYC 2CRSA 1CHVS 1TXBA 3EVSC 2GOOB 2L5SA 1COEA 2MHYA 1CTXA 4BDTB 4EY8B 5IMYC 1ERAA 1HOYA 3KFDI 1KTZB 4P7UA 1YWHA 1G6MA 1TFSA 1F94A 3LAQU 4FAOE 1IK8A 1XT3A 1NXBA 2I9BE 1F8UB 2CRTA 2BHIA 1CDSA 4FAOC 2BTXA 1I02A 1QKDA 1UG4A 1CVOA 2CTXA 1ABTA 5EBXA 2CDXA 2H62D 1FSSB 1QKEA 4AEAA 1HC9B 2QJ9C 2MJ0A 1LXHA 1B41B 2L03A 2QC1A 5DU1A 4RUDA 1NTXA 4IYEA 1NTNA 1DRSA 1ONJA 1CCQA 1JE9A 2H7ZB 1NEAA 1CODA 2N99A 1MR6A 2JVEA 3EBXA 1H0JA 1KBAA 1PLOA 2MJYA 2PJYB 3FEVA 3VTSA 1CB9A 1IJCA 1KC4A 2UX2A 3HH7A 1JBDA 2FD6U 1NYUA 1NYSA 1CREA 4HQPF 5IMTD 1IDGA 1TGXA 1TXAA 2H64C 2VLWA 1HAAA 2OFSA 1FFJA 3PLCA 1LX5B 1JGKA 1RGJA
chains in the Genus database with same CATH superfamily
1LSIA 1RL5A 1KXIA 4QTIU 1KU6B 1FASA 2QJBC 2H5FA 2H7ZA 1BXPA 2ABXA 1HAJA 3BT2U 1VB0A 1QM7A 2ERAA 2H62C 1CXNA 1FSCA 1IQ9A 1MAHF 1IDHA 2LA1A 1FF4A 1W6BA 1ZADA 2MUPA 1KL8A 2MJ4A 5DO6A 1FRAA 4LFTA 2HLQA 2QJAC 2X8BB 1HC9A 1REWC 2CCXA 4ZQYA 1S4YA 3QB4B 2JQPA 1KBTA 1CDTA 2LCRA 4BIKB 4DO8A 2NBTA 3NDSA 2MFAA 1LJZA 1NORA 1IDIA 1CXOA 4OM4A 1V6PA 1ERGA 3NH7A 1CDQA 3U73U 1ES7B 1KBSA 2H64B 3ERAA 1IDLA 2HLRA 2GOOC 2K3GA 3NEQA 4OM5A 4UY2C 2MUOA 2UWRA 1BTEA 2H8UA 1M9ZA 3BT1U 4XJJA 6EBXA 1LXGA 3KFDE 1IKCA 5DZ5A 1KS6A 1CRFA 1KFHA 1L4WA 3U74U 2J8BA 1CDRA 2PJYC 2CRSA 1CHVS 1TXBA 3EVSC 2GOOB 2L5SA 1COEA 2MHYA 1CTXA 4BDTB 4EY8B 5IMYC 1ERAA 1HOYA 3KFDI 1KTZB 4P7UA 1YWHA 1G6MA 1TFSA 1F94A 3LAQU 4FAOE 1IK8A 1XT3A 1NXBA 2I9BE 1F8UB 2CRTA 2BHIA 1CDSA 4FAOC 2BTXA 1I02A 1QKDA 1UG4A 1CVOA 2CTXA 1ABTA 5EBXA 2CDXA 2H62D 1FSSB 1QKEA 4AEAA 1HC9B 2QJ9C 2MJ0A 1LXHA 1B41B 2L03A 2QC1A 5DU1A 4RUDA 1NTXA 4IYEA 1NTNA 1DRSA 1ONJA 1CCQA 4KSNA 2H7ZB 1JE9A 1NEAA 1CODA 2N99A 1MR6A 2JVEA 3EBXA 1H0JA 1KBAA 1PLOA 2MJYA 2PJYB 3FEVA 3VTSA 1CB9A 1IJCA 1KC4A 2UX2A 3HH7A 1JBDA 2FD6U 1NYUA 1NYSA 1CREA 4HQPF 5IMTD 1IDGA 1TGXA 1TXAA 2H64C 2VLWA 1HAAA 2OFSA 1FFJA 3PLCA 1LX5B 1JGKA 1RGJA
chains in the Genus database with same CATH topology
1LSIA 1RL5A 1KXIA 4QTIU 1KU6B 1FASA 2QJBC 2H5FA 2H7ZA 1BXPA 2ABXA 1HAJA 3BT2U 1VB0A 1QM7A 2ERAA 2H62C 1CXNA 1FSCA 1IQ9A 1MAHF 1IDHA 2LA1A 1FF4A 1W6BA 1ZADA 2MUPA 1KL8A 2MJ4A 5DO6A 1FRAA 4LFTA 2HLQA 2QJAC 2X8BB 1HC9A 1REWC 2CCXA 4ZQYA 1S4YA 3QB4B 2JQPA 1KBTA 1CDTA 2LCRA 4BIKB 4DO8A 2NBTA 3NDSA 2MFAA 1LJZA 1NORA 1IDIA 1CXOA 4OM4A 1V6PA 1ERGA 3NH7A 1CDQA 3U73U 1ES7B 1KBSA 2H64B 3ERAA 1IDLA 2HLRA 2GOOC 2K3GA 3NEQA 4OM5A 4UY2C 2MUOA 2UWRA 1BTEA 2H8UA 1M9ZA 3BT1U 4XJJA 6EBXA 1LXGA 3KFDE 1IKCA 5DZ5A 1KS6A 1CRFA 1KFHA 1L4WA 3U74U 2J8BA 1CDRA 2PJYC 2CRSA 1CHVS 1TXBA 3EVSC 2GOOB 2L5SA 1COEA 2MHYA 1CTXA 4BDTB 4EY8B 5IMYC 1ERAA 1HOYA 3KFDI 1KTZB 4P7UA 1YWHA 1G6MA 1TFSA 1F94A 3LAQU 4FAOE 1IK8A 1XT3A 1NXBA 2I9BE 1F8UB 2CRTA 2BHIA 1CDSA 4FAOC 2BTXA 1I02A 1QKDA 1UG4A 1CVOA 2CTXA 1ABTA 5EBXA 2CDXA 2H62D 1FSSB 1QKEA 4AEAA 1HC9B 2QJ9C 2MJ0A 1LXHA 1B41B 2L03A 2QC1A 5DU1A 4RUDA 1NTXA 4IYEA 1NTNA 1DRSA 1ONJA 1CCQA 4KSNA 2H7ZB 1JE9A 1NEAA 1CODA 2N99A 1MR6A 2JVEA 3EBXA 1H0JA 1KBAA 1PLOA 2MJYA 2PJYB 3FEVA 3VTSA 1CB9A 1IJCA 1KC4A 2UX2A 3HH7A 1JBDA 2FD6U 1NYUA 1NYSA 1CREA 4HQPF 5IMTD 1IDGA 1TGXA 1TXAA 2H64C 2VLWA 1HAAA 2OFSA 1FFJA 3PLCA 1LX5B 1JGKA 1RGJA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1LSI A;  1RL5 A;  1KXI A;  4QTI U;  1KU6 B;  1FAS A;  2QJB C;  2H5F A;  2H7Z A;  1BXP A;  2ABX A;  1HAJ A;  3BT2 U;  1VB0 A;  1QM7 A;  2ERA A;  2H62 C;  1CXN A;  1FSC A;  1IQ9 A;  1MAH F;  1IDH A;  2LA1 A;  1FF4 A;  1W6B A;  1ZAD A;  2MUP A;  1KL8 A;  2MJ4 A;  5DO6 A;  1FRA A;  4LFT A;  2HLQ A;  2QJA C;  2X8B B;  1HC9 A;  1REW C;  2CCX A;  4ZQY A;  1S4Y A;  3QB4 B;  2JQP A;  1KBT A;  1CDT A;  2LCR A;  4BIK B;  4DO8 A;  2NBT A;  3NDS A;  2MFA A;  1LJZ A;  1NOR A;  1IDI A;  1CXO A;  4OM4 A;  1V6P A;  1ERG A;  3NH7 A;  1CDQ A;  3U73 U;  1ES7 B;  1KBS A;  2H64 B;  3ERA A;  1IDL A;  2HLR A;  2GOO C;  2K3G A;  3NEQ A;  4OM5 A;  4UY2 C;  2MUO A;  2UWR A;  1BTE A;  2H8U A;  1M9Z A;  3BT1 U;  4XJJ A;  6EBX A;  1LXG A;  3KFD E;  1IKC A;  5DZ5 A;  1KS6 A;  1CRF A;  1KFH A;  1L4W A;  3U74 U;  2J8B A;  1CDR A;  2PJY C;  2CRS A;  1CHV S;  1TXB A;  3EVS C;  2GOO B;  2L5S A;  1COE A;  2MHY A;  1CTX A;  4BDT B;  4EY8 B;  5IMY C;  1ERA A;  1HOY A;  3KFD I;  1KTZ B;  4P7U A;  1YWH A;  1G6M A;  1TFS A;  1F94 A;  3LAQ U;  4FAO E;  1IK8 A;  1XT3 A;  1NXB A;  2I9B E;  1F8U B;  2CRT A;  2BHI A;  1CDS A;  4FAO C;  2BTX A;  1I02 A;  1QKD A;  1UG4 A;  1CVO A;  2CTX A;  1ABT A;  5EBX A;  2CDX A;  2H62 D;  1FSS B;  1QKE A;  4AEA A;  1HC9 B;  2QJ9 C;  2MJ0 A;  1LXH A;  1B41 B;  2L03 A;  2QC1 A;  5DU1 A;  4RUD A;  1NTX A;  4IYE A;  1NTN A;  1DRS A;  1ONJ A;  1CCQ A;  1JE9 A;  2H7Z B;  1NEA A;  1COD A;  2N99 A;  1MR6 A;  2JVE A;  3EBX A;  1H0J A;  1KBA A;  1PLO A;  2MJY A;  2PJY B;  3FEV A;  3VTS A;  1CB9 A;  1IJC A;  1KC4 A;  2UX2 A;  3HH7 A;  1JBD A;  2FD6 U;  1NYU A;  1NYS A;  1CRE A;  4HQP F;  5IMT D;  1IDG A;  1TGX A;  1TXA A;  2H64 C;  2VLW A;  1HAA A;  2OFS A;  1FFJ A;  3PLC A;  1LX5 B;  1JGK A;  1RGJ A; 
#chains in the Genus database with same CATH topology
 1LSI A;  1RL5 A;  1KXI A;  4QTI U;  1KU6 B;  1FAS A;  2QJB C;  2H5F A;  2H7Z A;  1BXP A;  2ABX A;  1HAJ A;  3BT2 U;  1VB0 A;  1QM7 A;  2ERA A;  2H62 C;  1CXN A;  1FSC A;  1IQ9 A;  1MAH F;  1IDH A;  2LA1 A;  1FF4 A;  1W6B A;  1ZAD A;  2MUP A;  1KL8 A;  2MJ4 A;  5DO6 A;  1FRA A;  4LFT A;  2HLQ A;  2QJA C;  2X8B B;  1HC9 A;  1REW C;  2CCX A;  4ZQY A;  1S4Y A;  3QB4 B;  2JQP A;  1KBT A;  1CDT A;  2LCR A;  4BIK B;  4DO8 A;  2NBT A;  3NDS A;  2MFA A;  1LJZ A;  1NOR A;  1IDI A;  1CXO A;  4OM4 A;  1V6P A;  1ERG A;  3NH7 A;  1CDQ A;  3U73 U;  1ES7 B;  1KBS A;  2H64 B;  3ERA A;  1IDL A;  2HLR A;  2GOO C;  2K3G A;  3NEQ A;  4OM5 A;  4UY2 C;  2MUO A;  2UWR A;  1BTE A;  2H8U A;  1M9Z A;  3BT1 U;  4XJJ A;  6EBX A;  1LXG A;  3KFD E;  1IKC A;  5DZ5 A;  1KS6 A;  1CRF A;  1KFH A;  1L4W A;  3U74 U;  2J8B A;  1CDR A;  2PJY C;  2CRS A;  1CHV S;  1TXB A;  3EVS C;  2GOO B;  2L5S A;  1COE A;  2MHY A;  1CTX A;  4BDT B;  4EY8 B;  5IMY C;  1ERA A;  1HOY A;  3KFD I;  1KTZ B;  4P7U A;  1YWH A;  1G6M A;  1TFS A;  1F94 A;  3LAQ U;  4FAO E;  1IK8 A;  1XT3 A;  1NXB A;  2I9B E;  1F8U B;  2CRT A;  2BHI A;  1CDS A;  4FAO C;  2BTX A;  1I02 A;  1QKD A;  1UG4 A;  1CVO A;  2CTX A;  1ABT A;  5EBX A;  2CDX A;  2H62 D;  1FSS B;  1QKE A;  4AEA A;  1HC9 B;  2QJ9 C;  2MJ0 A;  1LXH A;  1B41 B;  2L03 A;  2QC1 A;  5DU1 A;  4RUD A;  1NTX A;  4IYE A;  1NTN A;  1DRS A;  1ONJ A;  1CCQ A;  4KSN A;  2H7Z B;  1JE9 A;  1NEA A;  1COD A;  2N99 A;  1MR6 A;  2JVE A;  3EBX A;  1H0J A;  1KBA A;  1PLO A;  2MJY A;  2PJY B;  3FEV A;  3VTS A;  1CB9 A;  1IJC A;  1KC4 A;  2UX2 A;  3HH7 A;  1JBD A;  2FD6 U;  1NYU A;  1NYS A;  1CRE A;  4HQP F;  5IMT D;  1IDG A;  1TGX A;  1TXA A;  2H64 C;  2VLW A;  1HAA A;  2OFS A;  1FFJ A;  3PLC A;  1LX5 B;  1JGK A;  1RGJ A; 
#chains in the Genus database with same CATH homology
 1LSI A;  1RL5 A;  1KXI A;  4QTI U;  1KU6 B;  1FAS A;  2QJB C;  2H5F A;  2H7Z A;  1BXP A;  2ABX A;  1HAJ A;  3BT2 U;  1VB0 A;  1QM7 A;  2ERA A;  2H62 C;  1CXN A;  1FSC A;  1IQ9 A;  1MAH F;  1IDH A;  2LA1 A;  1FF4 A;  1W6B A;  1ZAD A;  2MUP A;  1KL8 A;  2MJ4 A;  5DO6 A;  1FRA A;  4LFT A;  2HLQ A;  2QJA C;  2X8B B;  1HC9 A;  1REW C;  2CCX A;  4ZQY A;  1S4Y A;  3QB4 B;  2JQP A;  1KBT A;  1CDT A;  2LCR A;  4BIK B;  4DO8 A;  2NBT A;  3NDS A;  2MFA A;  1LJZ A;  1NOR A;  1IDI A;  1CXO A;  4OM4 A;  1V6P A;  1ERG A;  3NH7 A;  1CDQ A;  3U73 U;  1ES7 B;  1KBS A;  2H64 B;  3ERA A;  1IDL A;  2HLR A;  2GOO C;  2K3G A;  3NEQ A;  4OM5 A;  4UY2 C;  2MUO A;  2UWR A;  1BTE A;  2H8U A;  1M9Z A;  3BT1 U;  4XJJ A;  6EBX A;  1LXG A;  3KFD E;  1IKC A;  5DZ5 A;  1KS6 A;  1CRF A;  1KFH A;  1L4W A;  3U74 U;  2J8B A;  1CDR A;  2PJY C;  2CRS A;  1CHV S;  1TXB A;  3EVS C;  2GOO B;  2L5S A;  1COE A;  2MHY A;  1CTX A;  4BDT B;  4EY8 B;  5IMY C;  1ERA A;  1HOY A;  3KFD I;  1KTZ B;  4P7U A;  1YWH A;  1G6M A;  1TFS A;  1F94 A;  3LAQ U;  4FAO E;  1IK8 A;  1XT3 A;  1NXB A;  2I9B E;  1F8U B;  2CRT A;  2BHI A;  1CDS A;  4FAO C;  2BTX A;  1I02 A;  1QKD A;  1UG4 A;  1CVO A;  2CTX A;  1ABT A;  5EBX A;  2CDX A;  2H62 D;  1FSS B;  1QKE A;  4AEA A;  1HC9 B;  2QJ9 C;  2MJ0 A;  1LXH A;  1B41 B;  2L03 A;  2QC1 A;  5DU1 A;  4RUD A;  1NTX A;  4IYE A;  1NTN A;  1DRS A;  1ONJ A;  1CCQ A;  4KSN A;  2H7Z B;  1JE9 A;  1NEA A;  1COD A;  2N99 A;  1MR6 A;  2JVE A;  3EBX A;  1H0J A;  1KBA A;  1PLO A;  2MJY A;  2PJY B;  3FEV A;  3VTS A;  1CB9 A;  1IJC A;  1KC4 A;  2UX2 A;  3HH7 A;  1JBD A;  2FD6 U;  1NYU A;  1NYS A;  1CRE A;  4HQP F;  5IMT D;  1IDG A;  1TGX A;  1TXA A;  2H64 C;  2VLW A;  1HAA A;  2OFS A;  1FFJ A;  3PLC A;  1LX5 B;  1JGK A;  1RGJ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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